Wall clock time and date at job start Wed Apr 1 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33494 * 125.49429 * 2 1 4 4 C 1.30223 * 109.67061 * 180.08644 * 3 2 1 5 5 N 1.34693 * 108.20356 * 359.68096 * 4 3 2 6 6 N 1.30958 * 125.50047 * 179.97438 * 2 1 3 7 7 C 1.46255 * 125.43019 * 180.59732 * 5 4 3 8 8 C 1.53314 * 109.21353 * 341.38795 * 7 5 4 9 9 N 1.47095 * 109.14739 * 45.54629 * 8 7 5 10 10 C 1.34773 * 120.97656 * 116.73822 * 9 8 7 11 11 O 1.21346 * 119.99642 * 354.93989 * 10 9 8 12 12 C 1.49448 * 120.00302 * 174.94079 * 10 9 8 13 13 O 1.21354 * 120.00111 * 275.29051 * 12 10 9 14 14 N 1.34775 * 120.00140 * 95.28129 * 12 10 9 15 15 C 1.46933 * 120.62869 * 5.04502 * 14 12 10 16 16 C 1.53188 * 108.77667 * 233.58257 * 15 14 12 17 17 C 1.53035 * 109.31568 * 305.36896 * 16 15 14 18 18 C 1.53039 * 109.54100 * 61.36617 * 17 16 15 19 19 H 1.09008 * 109.49851 * 58.61477 * 18 17 16 20 20 C 1.50693 * 109.50013 * 178.68324 * 18 17 16 21 21 H 1.08002 * 120.00339 * 359.97438 * 20 18 17 22 22 C 1.37884 * 120.00070 * 179.97438 * 20 18 17 23 23 N 1.31511 * 119.99736 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00061 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46808 * 120.00136 * 24 22 20 27 27 H 1.48490 * 109.47141 * 240.00279 * 24 22 20 28 28 C 1.46920 * 120.63275 * 184.77099 * 14 12 10 29 29 C 1.47489 * 118.05297 * 296.71697 * 9 8 7 30 30 H 1.08997 * 109.47384 * 90.02349 * 1 2 3 31 31 H 1.09003 * 109.47089 * 210.01475 * 1 2 3 32 32 H 1.08991 * 109.47428 * 330.01613 * 1 2 3 33 33 H 1.09002 * 109.51569 * 101.30663 * 7 5 4 34 34 H 1.09002 * 109.51784 * 221.46276 * 7 5 4 35 35 H 1.09008 * 109.52979 * 165.44427 * 8 7 5 36 36 H 1.08996 * 109.52823 * 285.64295 * 8 7 5 37 37 H 1.08993 * 109.58676 * 353.38092 * 15 14 12 38 38 H 1.09002 * 109.58136 * 113.65411 * 15 14 12 39 39 H 1.09005 * 109.49436 * 65.32636 * 16 15 14 40 40 H 1.09005 * 109.49455 * 185.41447 * 16 15 14 41 41 H 1.09006 * 109.45987 * 181.38634 * 17 16 15 42 42 H 1.09001 * 109.45986 * 301.35621 * 17 16 15 43 43 H 0.96996 * 119.99539 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58636 * 246.20039 * 28 14 12 45 45 H 1.08998 * 109.58578 * 6.62396 * 28 14 12 46 46 H 1.08999 * 109.94124 * 162.45342 * 29 9 8 47 47 H 1.08996 * 109.94132 * 283.69332 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0869 0.0000 4 6 3.5349 0.7318 -0.0019 5 7 3.5909 -0.6140 0.0040 6 7 2.2674 -1.0661 0.0005 7 6 4.8168 -1.4116 0.0167 8 6 5.9914 -0.5385 -0.4399 9 7 5.9226 0.7605 0.2467 10 6 6.8979 1.1516 1.0906 11 8 7.8037 0.3920 1.3646 12 6 6.8639 2.5206 1.6890 13 8 7.3205 3.4626 1.0752 14 7 6.3258 2.7091 2.9102 15 6 5.8692 1.5654 3.7117 16 6 4.4148 1.8050 4.1288 17 6 4.3085 3.1548 4.8421 18 6 4.7271 4.2736 3.8855 19 1 4.0876 4.2559 3.0028 20 6 4.5913 5.6049 4.5783 21 1 4.2410 5.6493 5.5990 22 6 4.9142 6.7665 3.9092 23 7 5.3403 6.7125 2.6662 24 14 4.7452 8.4168 4.7679 25 1 4.2492 8.2063 6.1517 26 1 6.0687 9.0887 4.8137 27 1 3.7839 9.2672 4.0210 28 6 6.1902 4.0616 3.4679 29 6 4.7551 1.6228 -0.0157 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5141 32 1 -0.3634 0.8900 0.5135 33 1 5.0044 -1.7749 1.0271 34 1 4.7073 -2.2583 -0.6610 35 1 6.9308 -1.0326 -0.1914 36 1 5.9337 -0.3846 -1.5174 37 1 5.9336 0.6539 3.1176 38 1 6.4947 1.4682 4.5990 39 1 3.7786 1.8101 3.2437 40 1 4.0942 1.0109 4.8032 41 1 3.2790 3.3166 5.1618 42 1 4.9639 3.1578 5.7131 43 1 5.5671 7.5297 2.1954 44 1 6.8398 4.1653 4.3370 45 1 6.4665 4.7975 2.7128 46 1 4.6706 2.3811 0.7626 47 1 4.8566 2.0991 -0.9908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346937037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:53 Heat of formation + Delta-G solvation = 34.018079 kcal Electronic energy + Delta-G solvation = -32388.830165 eV Core-core repulsion = 28187.918176 eV Total energy + Delta-G solvation = -4200.911989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54072 -40.75026 -38.77805 -37.04771 -36.82048 -34.18935 -33.48666 -32.45557 -31.96084 -30.72870 -29.94689 -28.89213 -27.03194 -25.74674 -25.15246 -24.26668 -22.51649 -21.97446 -21.07380 -20.46016 -19.44917 -18.50444 -17.62291 -17.51131 -16.80093 -16.55486 -16.22967 -16.05871 -15.32792 -15.00246 -14.69015 -14.49391 -14.25547 -13.93951 -13.80476 -13.69757 -13.60789 -13.32871 -13.22742 -12.92402 -12.77887 -12.74549 -12.44472 -12.29183 -12.09339 -12.00881 -11.86831 -11.30331 -11.11290 -10.99042 -10.58837 -10.48018 -10.34116 -10.14687 -10.03771 -9.96821 -9.49466 -9.44407 -9.34252 -9.24769 -8.99329 -8.52668 -8.04162 -6.07981 -4.15665 1.37772 1.81064 2.00997 2.24735 2.71275 2.83233 3.26098 3.33031 3.36690 3.39129 3.62742 3.93941 4.19920 4.38314 4.39118 4.51667 4.61763 4.88543 4.94567 5.06020 5.09705 5.14907 5.23391 5.25007 5.32800 5.40134 5.51772 5.58713 5.61886 5.72985 5.85575 6.02733 6.15678 6.18385 6.30220 6.44117 6.49053 6.51555 6.65172 6.71083 6.83500 6.92293 7.01094 7.45311 7.54845 7.73469 7.81155 7.95810 7.96135 8.21443 8.36739 8.88053 9.50624 10.98117 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003932 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.613687 B = 7118.713809 C = 8333.443180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.222 3.778 3 N -0.519 5.519 4 C 0.272 3.728 5 N -0.375 5.375 6 N -0.314 5.314 7 C 0.115 3.885 8 C 0.095 3.905 9 N -0.613 5.613 10 C 0.531 3.469 11 O -0.509 6.509 12 C 0.503 3.497 13 O -0.503 6.503 14 N -0.584 5.584 15 C 0.108 3.892 16 C -0.131 4.131 17 C -0.111 4.111 18 C 0.042 3.958 19 H 0.033 0.967 20 C -0.520 4.520 21 H 0.060 0.940 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.110 3.890 29 C 0.190 3.810 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.264 0.736 44 H 0.051 0.949 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -16.780 -6.052 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.060 4.060 3 N -0.247 5.247 4 C -0.006 4.006 5 N -0.167 5.167 6 N -0.143 5.143 7 C -0.008 4.008 8 C -0.028 4.028 9 N -0.350 5.350 10 C 0.315 3.685 11 O -0.383 6.383 12 C 0.284 3.716 13 O -0.378 6.378 14 N -0.318 5.318 15 C -0.016 4.016 16 C -0.170 4.170 17 C -0.148 4.148 18 C 0.023 3.977 19 H 0.051 0.949 20 C -0.558 4.558 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.009 4.009 29 C 0.065 3.935 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.182 -17.010 -6.343 18.431 hybrid contribution 0.192 0.744 0.403 0.868 sum -2.990 -16.266 -5.940 17.572 Atomic orbital electron populations 1.20100 0.83644 1.04238 1.03696 1.24455 0.98302 0.85227 0.98001 1.70189 0.99252 1.30679 1.24588 1.24191 0.95024 0.83965 0.97432 1.50116 1.05746 1.05586 1.55241 1.77926 0.86402 1.22450 1.27524 1.22245 0.79352 0.94512 1.04674 1.22096 0.99376 0.83557 0.97801 1.48242 1.21756 1.19237 1.45746 1.20885 0.81449 0.88136 0.78070 1.90766 1.34574 1.53061 1.59853 1.19827 0.80735 0.87741 0.83342 1.90857 1.45361 1.40103 1.61442 1.48664 1.57362 1.10523 1.15205 1.21727 0.96493 0.87616 0.95724 1.21937 0.94777 0.99505 1.00732 1.21639 1.00918 0.93405 0.98871 1.19063 0.91207 0.92639 0.94798 0.94923 1.21087 1.45163 0.90105 0.99486 0.92154 1.25036 0.94735 0.99310 0.94802 1.69855 1.43758 1.28328 1.09936 0.86517 0.77793 0.83890 0.79722 1.19777 1.20955 1.20930 1.22659 1.00123 0.78625 0.99504 1.20449 0.76676 0.90058 1.06347 0.89862 0.90057 0.89218 0.88825 0.87244 0.85584 0.89073 0.91979 0.90897 0.92247 0.92013 0.92637 0.92930 0.92569 0.93089 0.85649 0.85310 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.22 2.99 8.15 -156.43 -1.27 1.72 16 3 N -0.52 -7.92 11.18 -7.99 -0.09 -8.01 16 4 C 0.27 3.74 7.85 -155.77 -1.22 2.52 16 5 N -0.38 -4.63 4.03 -58.28 -0.24 -4.87 16 6 N -0.31 -4.27 12.73 32.50 0.41 -3.85 16 7 C 0.12 0.98 7.46 -4.01 -0.03 0.95 16 8 C 0.10 0.82 6.43 -3.55 -0.02 0.80 16 9 N -0.61 -7.69 2.97 -173.86 -0.52 -8.21 16 10 C 0.53 8.46 5.50 -11.59 -0.06 8.39 16 11 O -0.51 -8.70 16.51 5.50 0.09 -8.61 16 12 C 0.50 9.74 5.64 -11.59 -0.07 9.68 16 13 O -0.50 -11.49 16.53 5.49 0.09 -11.40 16 14 N -0.58 -11.16 2.97 -173.01 -0.51 -11.67 16 15 C 0.11 1.70 6.35 -3.71 -0.02 1.67 16 16 C -0.13 -2.07 6.08 -26.62 -0.16 -2.24 16 17 C -0.11 -2.09 5.10 -26.69 -0.14 -2.23 16 18 C 0.04 0.97 2.26 -91.43 -0.21 0.76 16 19 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 20 C -0.52 -13.40 8.56 -34.44 -0.29 -13.69 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.88 -24.36 11.41 55.43 0.63 -23.73 16 24 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.11 2.49 5.41 -3.49 -0.02 2.48 16 29 C 0.19 2.51 6.61 -4.46 -0.03 2.48 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 1.01 7.04 -51.92 -0.37 0.64 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.90 6.29 -51.93 -0.33 0.57 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.13 3.31 5.18 -51.93 -0.27 3.04 16 46 H 0.13 2.03 6.70 -51.93 -0.35 1.68 16 47 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -32.72 381.67 -9.43 -42.15 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.77 Total: 2.17 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -3.27 Total: 14.74 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.31 Total: -60.34 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.72 -9.43 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346937037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.165 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds