Wall clock time and date at job start Wed Apr 1 2020 04:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33494 * 125.49429 * 2 1 4 4 C 1.30223 * 109.67061 * 180.08644 * 3 2 1 5 5 N 1.34693 * 108.20356 * 359.68096 * 4 3 2 6 6 N 1.30958 * 125.50047 * 179.97438 * 2 1 3 7 7 C 1.46255 * 125.43019 * 180.59732 * 5 4 3 8 8 C 1.53314 * 109.21353 * 341.38795 * 7 5 4 9 9 N 1.47095 * 109.14739 * 45.54629 * 8 7 5 10 10 C 1.34773 * 120.97656 * 116.73822 * 9 8 7 11 11 O 1.21346 * 119.99642 * 354.93989 * 10 9 8 12 12 C 1.49448 * 120.00302 * 174.94079 * 10 9 8 13 13 O 1.21354 * 120.00111 * 275.29051 * 12 10 9 14 14 N 1.34775 * 120.00140 * 95.28129 * 12 10 9 15 15 C 1.46933 * 120.62869 * 5.04502 * 14 12 10 16 16 C 1.53188 * 108.77667 * 233.58257 * 15 14 12 17 17 C 1.53035 * 109.31568 * 305.36896 * 16 15 14 18 18 C 1.53039 * 109.54100 * 61.36617 * 17 16 15 19 19 H 1.09008 * 109.49851 * 58.61477 * 18 17 16 20 20 C 1.50693 * 109.50013 * 178.68324 * 18 17 16 21 21 H 1.08002 * 120.00339 * 359.97438 * 20 18 17 22 22 C 1.37884 * 120.00070 * 179.97438 * 20 18 17 23 23 N 1.31511 * 119.99736 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00061 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46808 * 120.00136 * 24 22 20 27 27 H 1.48490 * 109.47141 * 240.00279 * 24 22 20 28 28 C 1.46920 * 120.63275 * 184.77099 * 14 12 10 29 29 C 1.47489 * 118.05297 * 296.71697 * 9 8 7 30 30 H 1.08997 * 109.47384 * 90.02349 * 1 2 3 31 31 H 1.09003 * 109.47089 * 210.01475 * 1 2 3 32 32 H 1.08991 * 109.47428 * 330.01613 * 1 2 3 33 33 H 1.09002 * 109.51569 * 101.30663 * 7 5 4 34 34 H 1.09002 * 109.51784 * 221.46276 * 7 5 4 35 35 H 1.09008 * 109.52979 * 165.44427 * 8 7 5 36 36 H 1.08996 * 109.52823 * 285.64295 * 8 7 5 37 37 H 1.08993 * 109.58676 * 353.38092 * 15 14 12 38 38 H 1.09002 * 109.58136 * 113.65411 * 15 14 12 39 39 H 1.09005 * 109.49436 * 65.32636 * 16 15 14 40 40 H 1.09005 * 109.49455 * 185.41447 * 16 15 14 41 41 H 1.09006 * 109.45987 * 181.38634 * 17 16 15 42 42 H 1.09001 * 109.45986 * 301.35621 * 17 16 15 43 43 H 0.96996 * 119.99539 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58636 * 246.20039 * 28 14 12 45 45 H 1.08998 * 109.58578 * 6.62396 * 28 14 12 46 46 H 1.08999 * 109.94124 * 162.45342 * 29 9 8 47 47 H 1.08996 * 109.94132 * 283.69332 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0869 0.0000 4 6 3.5349 0.7318 -0.0019 5 7 3.5909 -0.6140 0.0040 6 7 2.2674 -1.0661 0.0005 7 6 4.8168 -1.4116 0.0167 8 6 5.9914 -0.5385 -0.4399 9 7 5.9226 0.7605 0.2467 10 6 6.8979 1.1516 1.0906 11 8 7.8037 0.3920 1.3646 12 6 6.8639 2.5206 1.6890 13 8 7.3205 3.4626 1.0752 14 7 6.3258 2.7091 2.9102 15 6 5.8692 1.5654 3.7117 16 6 4.4148 1.8050 4.1288 17 6 4.3085 3.1548 4.8421 18 6 4.7271 4.2736 3.8855 19 1 4.0876 4.2559 3.0028 20 6 4.5913 5.6049 4.5783 21 1 4.2410 5.6493 5.5990 22 6 4.9142 6.7665 3.9092 23 7 5.3403 6.7125 2.6662 24 14 4.7452 8.4168 4.7679 25 1 4.2492 8.2063 6.1517 26 1 6.0687 9.0887 4.8137 27 1 3.7839 9.2672 4.0210 28 6 6.1902 4.0616 3.4679 29 6 4.7551 1.6228 -0.0157 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5141 32 1 -0.3634 0.8900 0.5135 33 1 5.0044 -1.7749 1.0271 34 1 4.7073 -2.2583 -0.6610 35 1 6.9308 -1.0326 -0.1914 36 1 5.9337 -0.3846 -1.5174 37 1 5.9336 0.6539 3.1176 38 1 6.4947 1.4682 4.5990 39 1 3.7786 1.8101 3.2437 40 1 4.0942 1.0109 4.8032 41 1 3.2790 3.3166 5.1618 42 1 4.9639 3.1578 5.7131 43 1 5.5671 7.5297 2.1954 44 1 6.8398 4.1653 4.3370 45 1 6.4665 4.7975 2.7128 46 1 4.6706 2.3811 0.7626 47 1 4.8566 2.0991 -0.9908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346937037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:52 Heat of formation + Delta-G solvation = 12.894839 kcal Electronic energy + Delta-G solvation = -32389.746138 eV Core-core repulsion = 28187.918176 eV Total energy + Delta-G solvation = -4201.827961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53659 -42.10147 -40.17908 -38.52733 -38.04118 -35.36948 -35.13294 -33.60761 -33.39296 -31.78641 -31.54052 -29.79345 -28.31457 -27.14508 -26.78150 -25.37047 -23.82880 -23.52450 -22.14250 -21.55108 -20.93342 -19.79414 -18.91989 -18.68884 -18.22267 -17.97253 -17.58519 -17.24671 -16.62730 -16.35731 -16.12203 -15.90400 -15.43747 -15.31204 -15.26992 -14.78553 -14.65572 -14.54671 -14.45378 -14.29933 -14.05039 -13.96405 -13.68777 -13.50028 -13.21061 -12.91271 -12.85966 -12.80464 -12.75774 -12.67911 -12.33314 -12.25045 -11.94236 -11.72638 -11.18653 -11.16035 -11.01549 -10.98610 -10.68353 -10.51965 -10.41789 -10.37268 -9.68784 -8.10750 -6.25543 0.37341 0.70954 0.74242 1.17189 1.39753 1.42611 1.45455 1.55853 1.70686 1.96251 2.44158 2.65806 2.87452 3.13616 3.19411 3.56197 3.74294 3.77533 3.82233 3.88859 3.97738 4.14477 4.18890 4.21348 4.38001 4.47424 4.55235 4.59409 4.65761 4.72480 4.74187 4.74766 4.83730 4.88836 4.99609 5.10186 5.16577 5.19840 5.26306 5.34490 5.43267 5.44154 5.58419 5.61328 5.85472 5.93208 6.23221 6.31333 6.31749 6.73893 6.87091 6.96483 7.44427 8.93700 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003932 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.613687 B = 7118.713809 C = 8333.443180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.211 3.789 3 N -0.554 5.554 4 C 0.265 3.735 5 N -0.370 5.370 6 N -0.324 5.324 7 C 0.111 3.889 8 C 0.095 3.905 9 N -0.600 5.600 10 C 0.544 3.456 11 O -0.519 6.519 12 C 0.496 3.504 13 O -0.549 6.549 14 N -0.585 5.585 15 C 0.106 3.894 16 C -0.119 4.119 17 C -0.104 4.104 18 C 0.043 3.957 19 H -0.004 1.004 20 C -0.534 4.534 21 H 0.062 0.938 22 C 0.016 3.984 23 N -0.912 5.912 24 Si 0.953 3.047 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.124 3.876 29 C 0.195 3.805 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -19.485 -5.674 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 N -0.283 5.283 4 C -0.013 4.013 5 N -0.162 5.162 6 N -0.153 5.153 7 C -0.010 4.010 8 C -0.027 4.027 9 N -0.336 5.336 10 C 0.327 3.673 11 O -0.393 6.393 12 C 0.278 3.722 13 O -0.427 6.427 14 N -0.318 5.318 15 C -0.016 4.016 16 C -0.157 4.157 17 C -0.142 4.142 18 C 0.024 3.976 19 H 0.015 0.985 20 C -0.572 4.572 21 H 0.080 0.920 22 C -0.184 4.184 23 N -0.550 5.550 24 Si 0.779 3.221 25 H -0.187 1.187 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.003 3.997 29 C 0.069 3.931 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.724 -19.784 -5.958 20.994 hybrid contribution 0.319 1.547 0.256 1.600 sum -3.405 -18.236 -5.702 19.408 Atomic orbital electron populations 1.20262 0.81324 1.04964 1.04994 1.25144 0.99789 0.84630 0.97513 1.70163 1.00266 1.32192 1.25698 1.24038 0.94643 0.84695 0.97968 1.50356 1.06395 1.05286 1.54141 1.77877 0.86876 1.22644 1.27899 1.22576 0.77532 0.94782 1.06097 1.22474 1.00167 0.81244 0.98784 1.48152 1.20300 1.20479 1.44638 1.19971 0.82250 0.86353 0.78754 1.90770 1.35130 1.52744 1.60697 1.20510 0.79593 0.89119 0.82995 1.90822 1.47230 1.42226 1.62433 1.48618 1.57225 1.10229 1.15712 1.21969 0.96586 0.86808 0.96195 1.21835 0.94635 0.98677 1.00551 1.21520 1.00882 0.93552 0.98259 1.18952 0.90829 0.93594 0.94199 0.98546 1.21483 1.44566 0.91531 0.99622 0.91991 1.25789 0.94607 1.02678 0.95322 1.70025 1.44886 1.28778 1.11337 0.85570 0.77527 0.79898 0.79067 1.18696 1.20963 1.20916 1.22090 0.99560 0.80013 0.98020 1.20314 0.77044 0.89662 1.06032 0.88215 0.88451 0.89296 0.88108 0.83979 0.84206 0.86521 0.90048 0.89125 0.93569 0.88308 0.92639 0.92034 0.92965 0.93518 0.89638 0.88390 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.51 71.23 0.75 -0.21 16 2 C 0.21 5.43 8.15 138.48 1.13 6.56 16 3 N -0.55 -16.78 11.18 -179.19 -2.00 -18.78 16 4 C 0.26 7.07 7.85 138.44 1.09 8.15 16 5 N -0.37 -8.31 4.03 -338.29 -1.36 -9.67 16 6 N -0.32 -8.14 12.73 -51.07 -0.65 -8.79 16 7 C 0.11 1.50 7.46 86.53 0.65 2.14 16 8 C 0.09 1.32 6.43 86.37 0.56 1.88 16 9 N -0.60 -14.17 2.97 -822.34 -2.44 -16.61 16 10 C 0.54 16.85 5.50 87.27 0.48 17.33 16 11 O -0.52 -16.78 16.51 -3.23 -0.05 -16.84 16 12 C 0.50 19.68 5.64 87.27 0.49 20.17 16 13 O -0.55 -26.43 16.53 -3.26 -0.05 -26.49 16 14 N -0.59 -22.77 2.97 -819.64 -2.43 -25.21 16 15 C 0.11 3.18 6.35 86.36 0.55 3.72 16 16 C -0.12 -3.56 6.08 30.67 0.19 -3.37 16 17 C -0.10 -3.88 5.10 30.62 0.16 -3.73 16 18 C 0.04 2.08 2.26 -11.32 -0.03 2.05 16 19 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 20 C -0.53 -28.17 8.56 25.60 0.22 -27.95 16 21 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 22 C 0.02 0.87 5.30 84.66 0.45 1.32 16 23 N -0.91 -52.79 11.41 21.45 0.24 -52.55 16 24 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 28 C 0.12 5.88 5.41 86.51 0.47 6.34 16 29 C 0.20 5.13 6.61 85.57 0.57 5.70 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.14 1.71 7.04 -2.38 -0.02 1.69 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 2.15 6.29 -2.39 -0.02 2.14 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 4.80 5.18 -2.39 -0.01 4.79 16 46 H 0.10 3.26 6.70 -2.39 -0.02 3.25 16 47 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -74.60 381.67 1.97 -72.63 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.00 Total: 17.15 kcal Atomic # 6 Polarization: 32.41 SS G_CDS: 7.70 Total: 40.12 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -8.65 Total: -131.61 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.11 Total: -43.33 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.60 1.97 -72.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346937037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.521 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds