Wall clock time and date at job start Wed Apr 1 2020 04:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46499 * 109.47552 * 269.98241 * 9 8 3 11 11 C 1.34771 * 120.00390 * 179.97438 * 10 9 8 12 12 O 1.21596 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00325 * 179.97438 * 11 10 9 14 14 C 1.40192 * 120.00381 * 180.02562 * 13 11 10 15 15 C 1.40405 * 125.96869 * 359.71687 * 14 13 11 16 16 C 1.35248 * 107.86397 * 179.82617 * 15 14 13 17 17 C 1.50706 * 126.06797 * 180.15399 * 16 15 14 18 18 N 1.34964 * 107.85979 * 0.43688 * 16 15 14 19 19 C 1.46500 * 125.97420 * 179.70856 * 18 16 15 20 20 C 1.50707 * 109.46833 * 269.99200 * 19 18 16 21 21 H 1.08000 * 119.99762 * 0.02562 * 20 19 18 22 22 C 1.37868 * 119.99806 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99994 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00218 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47223 * 90.00378 * 24 22 20 26 26 H 1.48506 * 109.47319 * 210.00151 * 24 22 20 27 27 H 1.48493 * 109.47113 * 330.00098 * 24 22 20 28 28 N 1.31207 * 125.97581 * 180.02562 * 14 13 11 29 29 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 30 30 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 32 32 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 33 33 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 34 34 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 35 35 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 36 36 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 37 37 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 38 38 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 39 39 H 0.96999 * 119.99206 * 0.02562 * 10 9 8 40 40 H 0.97000 * 120.00104 * 0.02562 * 13 11 10 41 41 H 1.07996 * 126.07042 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47434 * 270.32456 * 17 16 15 43 43 H 1.08997 * 109.47010 * 30.32851 * 17 16 15 44 44 H 1.08995 * 109.46574 * 150.32525 * 17 16 15 45 45 H 1.08990 * 109.47609 * 29.99287 * 19 18 16 46 46 H 1.08999 * 109.46749 * 150.00080 * 19 18 16 47 47 H 0.97003 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8266 2.1508 3.0111 11 6 0.4792 1.9041 4.2897 12 8 1.2822 1.4009 5.0516 13 7 -0.7579 2.2160 4.7241 14 6 -1.1191 1.9598 6.0543 15 6 -0.2981 1.3805 7.0349 16 6 -1.0103 1.3078 8.1823 17 6 -0.5213 0.7560 9.4967 18 7 -2.2388 1.8112 7.9395 19 6 -3.3323 1.9172 8.9087 20 6 -4.1634 0.6607 8.8676 21 1 -3.9028 -0.1371 8.1879 22 6 -5.2564 0.5298 9.6977 23 7 -5.9814 -0.5670 9.6622 24 14 -5.7067 1.9094 10.8738 25 1 -6.6416 2.8472 10.2020 26 1 -6.3594 1.3388 12.0796 27 1 -4.4771 2.6389 11.2750 28 7 -2.2854 2.2144 6.5989 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3063 5.2772 1.4850 35 1 3.6104 4.3388 2.2510 36 1 3.9091 5.1887 0.7159 37 1 2.3388 0.7414 2.6558 38 1 2.9104 2.3610 3.1230 39 1 0.1860 2.5518 2.4032 40 1 -1.3984 2.6177 4.1164 41 1 0.7223 1.0542 6.8981 42 1 -0.7334 -0.3121 9.5439 43 1 0.5534 0.9171 9.5810 44 1 -1.0302 1.2641 10.3158 45 1 -2.9199 2.0474 9.9091 46 1 -3.9573 2.7745 8.6588 47 1 -6.7502 -0.6593 10.2465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365048308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:41 Heat of formation + Delta-G solvation = 106.540342 kcal Electronic energy + Delta-G solvation = -29687.896978 eV Core-core repulsion = 25490.129791 eV Total energy + Delta-G solvation = -4197.767188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.36175 -40.84805 -39.71310 -36.64995 -35.01135 -34.86708 -34.13989 -33.26246 -31.58378 -31.12805 -30.67832 -29.12512 -27.64344 -26.70005 -26.35811 -24.32708 -22.91405 -22.15423 -21.50829 -20.39698 -19.99424 -19.62180 -18.13188 -17.95314 -17.19571 -17.11994 -16.45895 -15.89324 -15.63554 -15.24619 -14.89951 -14.79167 -14.50887 -14.37233 -13.93194 -13.79241 -13.71368 -13.43010 -13.18702 -13.13737 -12.93884 -12.80533 -12.61845 -12.40002 -12.29353 -11.98490 -11.89879 -11.79183 -11.58284 -11.29351 -11.21991 -10.80980 -10.58521 -10.41608 -10.10828 -9.97053 -9.81681 -9.63057 -9.59016 -9.33769 -8.78793 -7.98812 -7.45047 -6.26774 -4.29740 0.95821 1.63638 2.43095 2.56517 2.64890 3.02748 3.14950 3.20794 3.22698 3.52766 3.73399 3.77220 3.96068 4.20710 4.24671 4.30835 4.41143 4.68832 4.71802 4.78313 5.01803 5.07648 5.10342 5.19280 5.27012 5.34306 5.38917 5.43652 5.44892 5.53974 5.61602 5.71849 5.77609 5.82261 6.04500 6.10627 6.16864 6.36152 6.44768 6.47526 6.59929 6.76395 7.00514 7.28567 7.44503 7.84386 7.86655 7.87066 8.31098 8.51261 8.59151 8.78778 9.28517 10.85739 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.001991 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.586953 B =14062.923632 C =14529.446363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.002 3.998 4 O 0.098 5.902 5 N -0.367 5.367 6 C 0.037 3.963 7 C -0.079 4.079 8 C -0.225 4.225 9 C 0.224 3.776 10 N -0.741 5.741 11 C 0.715 3.285 12 O -0.564 6.564 13 N -0.643 5.643 14 C 0.286 3.714 15 C -0.285 4.285 16 C 0.095 3.905 17 C -0.085 4.085 18 N -0.318 5.318 19 C 0.232 3.768 20 C -0.540 4.540 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.887 5.887 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.321 5.321 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.406 0.594 41 H 0.163 0.837 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.666 5.248 -17.389 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.063 4.063 4 O 0.035 5.965 5 N -0.073 5.073 6 C -0.123 4.123 7 C -0.136 4.136 8 C -0.230 4.230 9 C 0.100 3.900 10 N -0.398 5.398 11 C 0.414 3.586 12 O -0.439 6.439 13 N -0.293 5.293 14 C 0.032 3.968 15 C -0.316 4.316 16 C -0.036 4.036 17 C -0.143 4.143 18 N -0.100 5.100 19 C 0.113 3.887 20 C -0.578 4.578 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.524 5.524 24 Si 0.700 3.300 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 N -0.152 5.152 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.231 0.769 40 H 0.241 0.759 41 H 0.180 0.820 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.288 5.968 -17.754 25.489 hybrid contribution -0.522 0.424 0.674 0.952 sum 16.766 6.392 -17.080 24.773 Atomic orbital electron populations 1.21792 0.92895 1.03326 1.02836 1.20241 0.97111 0.86147 1.05077 1.24492 0.99216 0.96791 0.85811 1.84847 1.61293 1.17531 1.32797 1.73897 1.17802 0.99577 1.16057 1.23499 1.01136 0.97681 0.89983 1.20217 1.02212 0.92120 0.99082 1.20917 1.10675 0.94451 0.96912 1.19156 0.83511 1.01197 0.86166 1.45063 1.15596 1.68902 1.10276 1.15558 0.81700 0.79295 0.82021 1.90888 1.50452 1.48486 1.54107 1.41369 1.13551 1.65046 1.09303 1.18638 0.93100 1.00570 0.84445 1.21243 1.03374 1.16248 0.90778 1.21059 0.86352 0.98601 0.97619 1.20351 1.00738 1.01655 0.91572 1.48484 1.10277 1.44825 1.06434 1.19990 0.83968 0.99553 0.85208 1.21176 1.11404 1.01344 1.23865 0.90114 1.24809 0.95414 0.95763 0.96579 1.69875 1.17611 1.26240 1.38656 0.86892 0.79568 0.82456 0.81092 1.19661 1.20555 1.18884 1.77253 1.18144 1.27818 0.91941 0.92026 0.90841 0.91900 0.89075 0.88118 0.89909 0.89705 0.90411 0.89982 0.89955 0.76940 0.75894 0.82007 0.90088 0.90655 0.91157 0.93228 0.93713 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 37.16 0.37 -0.43 16 2 C -0.05 -0.24 6.35 -27.88 -0.18 -0.42 16 3 C 0.00 0.01 6.74 -35.31 -0.24 -0.23 16 4 O 0.10 0.91 11.20 17.17 0.19 1.11 16 5 N -0.37 -3.79 12.07 33.42 0.40 -3.39 16 6 C 0.04 0.32 7.33 -82.10 -0.60 -0.28 16 7 C -0.08 -0.51 10.39 36.00 0.37 -0.14 16 8 C -0.23 -1.75 5.69 -104.42 -0.59 -2.35 16 9 C 0.22 1.82 5.99 -5.19 -0.03 1.79 16 10 N -0.74 -6.71 5.55 -66.42 -0.37 -7.08 16 11 C 0.71 9.68 8.53 -86.93 -0.74 8.93 16 12 O -0.56 -9.51 13.47 5.28 0.07 -9.44 16 13 N -0.64 -9.42 5.45 -15.51 -0.08 -9.51 16 14 C 0.29 5.61 8.11 -154.37 -1.25 4.36 16 15 C -0.29 -5.68 9.52 -39.83 -0.38 -6.06 16 16 C 0.09 1.93 6.93 -82.28 -0.57 1.36 16 17 C -0.08 -1.39 10.11 36.01 0.36 -1.03 16 18 N -0.32 -7.28 3.59 -58.32 -0.21 -7.49 16 19 C 0.23 5.53 5.06 -5.19 -0.03 5.50 16 20 C -0.54 -14.99 9.94 -34.44 -0.34 -15.33 16 21 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 22 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 23 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 24 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 28 N -0.32 -7.16 12.59 31.44 0.40 -6.77 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.46 7.44 -51.93 -0.39 0.07 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.47 7.66 -51.93 -0.40 0.08 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.67 7.45 -51.93 -0.39 0.28 16 38 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.40 2.82 8.48 -40.82 -0.35 2.48 16 40 H 0.41 4.75 8.84 -40.82 -0.36 4.38 16 41 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 45 H 0.05 1.10 6.10 -51.93 -0.32 0.78 16 46 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -34.74 397.84 -8.08 -42.82 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.63 Total: 6.06 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.94 Total: -2.25 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.91 Total: -59.63 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.26 Total: -8.33 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.74 -8.08 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365048308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.356 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds