Wall clock time and date at job start Wed Apr 1 2020 04:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46499 * 109.47552 * 269.98241 * 9 8 3 11 11 C 1.34771 * 120.00390 * 179.97438 * 10 9 8 12 12 O 1.21596 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00325 * 179.97438 * 11 10 9 14 14 C 1.40192 * 120.00381 * 180.02562 * 13 11 10 15 15 C 1.40405 * 125.96869 * 359.71687 * 14 13 11 16 16 C 1.35248 * 107.86397 * 179.82617 * 15 14 13 17 17 C 1.50706 * 126.06797 * 180.15399 * 16 15 14 18 18 N 1.34964 * 107.85979 * 0.43688 * 16 15 14 19 19 C 1.46500 * 125.97420 * 179.70856 * 18 16 15 20 20 C 1.50707 * 109.46833 * 269.99200 * 19 18 16 21 21 H 1.08000 * 119.99762 * 0.02562 * 20 19 18 22 22 C 1.37868 * 119.99806 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99994 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00218 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47223 * 90.00378 * 24 22 20 26 26 H 1.48506 * 109.47319 * 210.00151 * 24 22 20 27 27 H 1.48493 * 109.47113 * 330.00098 * 24 22 20 28 28 N 1.31207 * 125.97581 * 180.02562 * 14 13 11 29 29 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 30 30 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 32 32 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 33 33 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 34 34 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 35 35 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 36 36 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 37 37 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 38 38 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 39 39 H 0.96999 * 119.99206 * 0.02562 * 10 9 8 40 40 H 0.97000 * 120.00104 * 0.02562 * 13 11 10 41 41 H 1.07996 * 126.07042 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47434 * 270.32456 * 17 16 15 43 43 H 1.08997 * 109.47010 * 30.32851 * 17 16 15 44 44 H 1.08995 * 109.46574 * 150.32525 * 17 16 15 45 45 H 1.08990 * 109.47609 * 29.99287 * 19 18 16 46 46 H 1.08999 * 109.46749 * 150.00080 * 19 18 16 47 47 H 0.97003 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8266 2.1508 3.0111 11 6 0.4792 1.9041 4.2897 12 8 1.2822 1.4009 5.0516 13 7 -0.7579 2.2160 4.7241 14 6 -1.1191 1.9598 6.0543 15 6 -0.2981 1.3805 7.0349 16 6 -1.0103 1.3078 8.1823 17 6 -0.5213 0.7560 9.4967 18 7 -2.2388 1.8112 7.9395 19 6 -3.3323 1.9172 8.9087 20 6 -4.1634 0.6607 8.8676 21 1 -3.9028 -0.1371 8.1879 22 6 -5.2564 0.5298 9.6977 23 7 -5.9814 -0.5670 9.6622 24 14 -5.7067 1.9094 10.8738 25 1 -6.6416 2.8472 10.2020 26 1 -6.3594 1.3388 12.0796 27 1 -4.4771 2.6389 11.2750 28 7 -2.2854 2.2144 6.5989 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3063 5.2772 1.4850 35 1 3.6104 4.3388 2.2510 36 1 3.9091 5.1887 0.7159 37 1 2.3388 0.7414 2.6558 38 1 2.9104 2.3610 3.1230 39 1 0.1860 2.5518 2.4032 40 1 -1.3984 2.6177 4.1164 41 1 0.7223 1.0542 6.8981 42 1 -0.7334 -0.3121 9.5439 43 1 0.5534 0.9171 9.5810 44 1 -1.0302 1.2641 10.3158 45 1 -2.9199 2.0474 9.9091 46 1 -3.9573 2.7745 8.6588 47 1 -6.7502 -0.6593 10.2465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365048308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:40 Heat of formation + Delta-G solvation = 83.253373 kcal Electronic energy + Delta-G solvation = -29688.906777 eV Core-core repulsion = 25490.129791 eV Total energy + Delta-G solvation = -4198.776986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.02669 -42.30641 -40.93601 -37.43838 -36.25062 -35.55669 -35.26460 -34.87383 -33.13022 -32.75795 -31.37417 -29.71851 -29.09814 -27.92612 -27.71792 -24.83394 -24.59380 -23.22752 -22.50121 -21.37988 -21.06828 -20.93541 -19.24335 -19.20892 -18.69459 -17.98271 -17.69686 -17.17155 -16.87329 -16.34485 -16.05762 -15.83671 -15.76209 -15.43106 -15.12156 -14.82126 -14.54069 -14.44562 -14.25425 -13.97702 -13.83605 -13.78441 -13.72012 -13.63734 -13.48735 -13.32459 -13.19302 -12.84169 -12.55864 -12.45130 -12.32804 -12.22914 -11.81366 -11.79133 -11.58612 -11.40486 -11.24133 -10.92324 -10.88031 -10.33724 -10.24804 -9.54851 -9.01647 -8.38554 -6.49287 0.32038 0.88456 1.03134 1.30169 1.38431 1.38757 1.48600 1.68094 2.03830 2.15730 2.28098 2.40506 2.94056 3.12106 3.18773 3.40484 3.67018 3.84530 3.86842 4.14427 4.19618 4.27439 4.29643 4.42701 4.52393 4.55468 4.61573 4.64631 4.70873 4.80028 4.82242 4.83424 4.85479 4.91611 5.01352 5.03203 5.08871 5.13241 5.18693 5.20519 5.25884 5.33588 5.40467 5.82989 5.92014 6.04717 6.40296 6.54379 6.70625 7.11242 7.14660 7.22975 7.41522 8.78022 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.001991 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.586953 B =14062.923632 C =14529.446363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.012 3.988 4 O 0.086 5.914 5 N -0.396 5.396 6 C 0.034 3.966 7 C -0.080 4.080 8 C -0.229 4.229 9 C 0.227 3.773 10 N -0.718 5.718 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.636 5.636 14 C 0.295 3.705 15 C -0.295 4.295 16 C 0.089 3.911 17 C -0.084 4.084 18 N -0.344 5.344 19 C 0.241 3.759 20 C -0.548 4.548 21 H 0.024 0.976 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.950 3.050 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.233 1.233 28 N -0.359 5.359 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.409 0.591 40 H 0.420 0.580 41 H 0.169 0.831 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.813 6.602 -16.959 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.053 4.053 4 O 0.026 5.974 5 N -0.105 5.105 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.233 4.233 9 C 0.104 3.896 10 N -0.375 5.375 11 C 0.416 3.584 12 O -0.473 6.473 13 N -0.288 5.288 14 C 0.040 3.960 15 C -0.326 4.326 16 C -0.041 4.041 17 C -0.142 4.142 18 N -0.127 5.127 19 C 0.121 3.879 20 C -0.586 4.586 21 H 0.042 0.958 22 C -0.179 4.179 23 N -0.576 5.576 24 Si 0.771 3.229 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.156 1.156 28 N -0.189 5.189 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.245 0.755 40 H 0.257 0.743 41 H 0.186 0.814 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.462 7.328 -17.403 26.409 hybrid contribution -0.788 -0.103 0.353 0.869 sum 17.674 7.225 -17.051 25.599 Atomic orbital electron populations 1.21785 0.92983 1.03688 1.02321 1.20385 0.96867 0.84873 1.06365 1.24919 0.97795 0.97341 0.85276 1.84821 1.61590 1.17566 1.33423 1.73902 1.19338 1.00286 1.16970 1.23895 1.00343 0.98538 0.89773 1.20320 1.02634 0.91502 0.99274 1.20814 1.11472 0.94399 0.96662 1.19194 0.82623 1.01519 0.86282 1.44910 1.16288 1.67584 1.08718 1.15642 0.80874 0.78927 0.82924 1.90861 1.51148 1.49907 1.55351 1.41371 1.14465 1.65097 1.07820 1.18932 0.92180 0.98815 0.86110 1.21431 1.03674 1.16551 0.90905 1.21753 0.85513 0.97501 0.99342 1.20501 1.02841 1.01119 0.89754 1.48399 1.10809 1.46751 1.06706 1.19768 0.84140 0.97196 0.86755 1.21254 1.12697 1.01707 1.22966 0.95768 1.25827 0.94850 0.98709 0.98507 1.70036 1.18485 1.28977 1.40129 0.85687 0.80395 0.78643 0.78128 1.19125 1.20026 1.15628 1.77166 1.19690 1.29776 0.92261 0.92114 0.90075 0.92834 0.87407 0.87241 0.89211 0.88722 0.90087 0.89542 0.89737 0.75487 0.74263 0.81391 0.90441 0.87346 0.90509 0.90849 0.93450 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.90 71.98 0.71 -0.66 16 2 C -0.05 -0.39 6.35 29.85 0.19 -0.20 16 3 C 0.01 0.15 6.74 25.04 0.17 0.32 16 4 O 0.09 1.53 11.20 71.61 0.80 2.34 16 5 N -0.40 -7.91 12.07 -49.55 -0.60 -8.51 16 6 C 0.03 0.55 7.33 43.58 0.32 0.87 16 7 C -0.08 -0.92 10.39 71.23 0.74 -0.18 16 8 C -0.23 -3.21 5.69 -19.73 -0.11 -3.32 16 9 C 0.23 3.28 5.99 85.63 0.51 3.80 16 10 N -0.72 -11.71 5.55 -482.31 -2.68 -14.39 16 11 C 0.72 18.40 8.53 179.06 1.53 19.92 16 12 O -0.60 -19.33 13.47 -4.02 -0.05 -19.38 16 13 N -0.64 -18.02 5.45 -321.24 -1.75 -19.77 16 14 C 0.30 11.47 8.11 133.32 1.08 12.55 16 15 C -0.29 -11.57 9.52 22.11 0.21 -11.36 16 16 C 0.09 3.57 6.93 41.39 0.29 3.85 16 17 C -0.08 -2.63 10.11 71.24 0.72 -1.91 16 18 N -0.34 -15.77 3.59 -338.44 -1.22 -16.98 16 19 C 0.24 11.37 5.06 85.64 0.43 11.80 16 20 C -0.55 -31.20 9.94 25.60 0.25 -30.94 16 21 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 22 C 0.02 1.15 5.47 84.65 0.46 1.62 16 23 N -0.94 -56.77 13.96 21.44 0.30 -56.47 16 24 Si 0.95 40.50 27.47 68.60 1.88 42.38 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 28 N -0.36 -16.08 12.59 -54.44 -0.69 -16.76 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.75 7.44 -2.39 -0.02 0.74 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.89 7.66 -2.39 -0.02 0.87 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.24 7.45 -2.39 -0.02 1.22 16 38 H 0.08 1.25 7.66 -2.39 -0.02 1.24 16 39 H 0.41 5.00 8.48 -92.71 -0.79 4.22 16 40 H 0.42 9.34 8.84 -92.71 -0.82 8.52 16 41 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 42 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.08 2.29 7.07 -2.39 -0.02 2.27 16 45 H 0.07 3.09 6.10 -2.39 -0.01 3.07 16 46 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 47 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.70 397.84 2.88 -74.81 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.63 Total: 26.57 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.51 Total: 6.16 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -6.63 Total: -132.88 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.75 Total: -17.04 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.38 kcal Total: -77.70 2.88 -74.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365048308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.068 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds