Wall clock time and date at job start Wed Apr 1 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95128 * 2 1 4 4 C 1.32132 * 120.96481 * 179.67801 * 3 2 1 5 5 C 1.39963 * 118.92375 * 0.61404 * 4 3 2 6 6 C 1.47833 * 120.94092 * 179.69681 * 5 4 3 7 7 O 1.21549 * 120.00108 * 173.88113 * 6 5 4 8 8 N 1.34779 * 119.99810 * 353.87714 * 6 5 4 9 9 C 1.46507 * 119.99762 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84873 * 23.80238 * 9 8 6 11 11 C 1.53776 * 113.61191 * 155.00331 * 9 8 6 12 12 C 1.53783 * 87.17265 * 139.93732 * 11 9 8 13 13 H 1.08993 * 113.61262 * 89.15665 * 12 11 9 14 14 N 1.46905 * 113.61174 * 220.05799 * 12 11 9 15 15 C 1.46895 * 110.99776 * 204.99587 * 14 12 11 16 16 C 1.50701 * 109.47400 * 180.02562 * 15 14 12 17 17 O 1.21300 * 119.99429 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00525 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00451 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00282 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99797 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47524 * 90.00092 * 23 21 19 25 25 H 1.48504 * 109.46502 * 209.99759 * 23 21 19 26 26 H 1.48499 * 109.47317 * 329.99235 * 23 21 19 27 27 C 1.53780 * 113.61106 * 252.49936 * 9 8 6 28 28 C 1.39931 * 118.12135 * 359.42613 * 5 4 3 29 29 C 1.50705 * 120.53906 * 180.29485 * 28 5 4 30 30 N 1.31852 * 118.95191 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47210 * 269.97328 * 1 2 3 32 32 H 1.08999 * 109.47071 * 29.97969 * 1 2 3 33 33 H 1.09001 * 109.46822 * 149.97708 * 1 2 3 34 34 H 1.08002 * 120.54160 * 180.31077 * 4 3 2 35 35 H 0.96994 * 119.99965 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.61176 * 254.52709 * 11 9 8 37 37 H 1.08999 * 113.61560 * 25.34399 * 11 9 8 38 38 H 1.00901 * 110.99705 * 81.05208 * 14 12 11 39 39 H 1.09001 * 109.47343 * 300.00270 * 15 14 12 40 40 H 1.09000 * 109.46982 * 60.00587 * 15 14 12 41 41 H 0.97009 * 119.99930 * 0.02562 * 18 16 15 42 42 H 0.97005 * 119.99721 * 180.02562 * 22 21 19 43 43 H 1.09010 * 113.61554 * 334.56775 * 27 9 8 44 44 H 1.08997 * 113.61796 * 105.38608 * 27 9 8 45 45 H 1.08994 * 109.47000 * 83.73004 * 29 28 5 46 46 H 1.09000 * 109.46774 * 203.73215 * 29 28 5 47 47 H 1.09000 * 109.46837 * 323.73451 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0064 5 6 4.1855 0.0000 0.0000 6 6 5.6638 0.0000 0.0000 7 8 6.2715 -1.0472 0.1067 8 7 6.3377 1.1612 -0.1183 9 6 7.8028 1.1611 -0.1189 10 1 8.2258 0.2057 -0.4294 11 6 8.4185 2.3713 -0.8407 12 6 9.4657 2.4133 0.2847 13 1 10.3452 1.8011 0.0858 14 7 9.8034 3.7740 0.7237 15 6 11.1467 3.8177 1.3164 16 6 11.4570 5.2258 1.7544 17 8 10.6392 6.1064 1.5894 18 7 12.6430 5.5069 2.3294 19 6 12.9255 6.7881 2.7274 20 1 12.1975 7.5721 2.5805 21 6 14.1486 7.0779 3.3197 22 7 15.0347 6.1240 3.4980 23 14 14.5331 8.8234 3.8625 24 1 14.0891 9.0144 5.2666 25 1 15.9963 9.0596 3.7697 26 1 13.8199 9.7839 2.9827 27 6 8.4192 1.7186 1.1749 28 6 3.4661 -1.2002 -0.0005 29 6 4.1857 -2.5243 -0.0004 30 7 2.1452 -1.1537 -0.0005 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9817 2.1494 0.0114 35 1 5.8527 1.9969 -0.2032 36 1 8.8371 2.1302 -1.8178 37 1 7.7664 3.2444 -0.8633 38 1 9.1122 4.1280 1.3679 39 1 11.1850 3.1525 2.1791 40 1 11.8806 3.4967 0.5772 41 1 13.2972 4.8028 2.4611 42 1 15.8884 6.3263 3.9119 43 1 7.7679 2.4138 1.7047 44 1 8.8371 0.9506 1.8258 45 1 4.4574 -2.7901 1.0211 46 1 3.5327 -3.2927 -0.4144 47 1 5.0874 -2.4477 -0.6080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480227681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:10 Heat of formation + Delta-G solvation = -1.193429 kcal Electronic energy + Delta-G solvation = -28685.417242 eV Core-core repulsion = 24482.978367 eV Total energy + Delta-G solvation = -4202.438874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85172 -40.27402 -38.85161 -37.99535 -35.24903 -34.57384 -34.13527 -33.77946 -32.51412 -31.21131 -29.67352 -28.99955 -26.84499 -25.86302 -24.75557 -24.32286 -23.41455 -22.39927 -21.11802 -20.28481 -19.20756 -18.46912 -18.00675 -17.84038 -16.68298 -16.42648 -16.16446 -15.97219 -15.48573 -15.18074 -14.99832 -14.65952 -14.49115 -14.19160 -14.03185 -13.70189 -13.55436 -13.38088 -13.30146 -12.95303 -12.88047 -12.86193 -12.65145 -12.60154 -12.16070 -12.07444 -11.69342 -11.57762 -11.30069 -11.09676 -11.06487 -11.05274 -10.89285 -10.40710 -10.23425 -10.07995 -9.96617 -9.80162 -9.52831 -9.35389 -8.48043 -8.06635 -7.97536 -6.43478 -3.84400 -0.07660 0.51818 2.36456 2.64553 3.16553 3.23035 3.25445 3.31322 3.31981 3.48521 3.83312 3.88691 4.06958 4.16202 4.24177 4.34087 4.44580 4.50161 4.58827 4.71386 4.81175 4.87350 5.01774 5.12189 5.15207 5.25100 5.28144 5.30166 5.35762 5.42435 5.54778 5.57458 5.65480 5.74138 5.75822 5.84808 5.85102 5.95835 5.98035 6.20684 6.28976 6.40816 7.02520 7.20285 7.51324 7.53504 7.60328 7.72544 8.04403 8.59164 9.16012 9.52361 10.03577 10.74167 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.001519 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.778035 B =18428.623472 C =19155.741249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.342 3.658 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.257 4.257 6 C 0.571 3.429 7 O -0.526 6.526 8 N -0.710 5.710 9 C 0.123 3.877 10 H 0.119 0.881 11 C -0.133 4.133 12 C 0.072 3.928 13 H 0.101 0.899 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.585 6.585 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.181 4.181 28 C 0.241 3.759 29 C -0.113 4.113 30 N -0.526 5.526 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.351 0.649 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.955 -16.934 -8.018 29.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 N -0.242 5.242 4 C 0.025 3.975 5 C -0.265 4.265 6 C 0.357 3.643 7 O -0.404 6.404 8 N -0.360 5.360 9 C 0.018 3.982 10 H 0.136 0.864 11 C -0.172 4.172 12 C -0.040 4.040 13 H 0.119 0.881 14 N -0.285 5.285 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.222 4.222 28 C 0.094 3.906 29 C -0.169 4.169 30 N -0.241 5.241 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.639 -16.855 -8.592 30.277 hybrid contribution 1.263 0.553 1.315 1.906 sum -22.376 -16.302 -7.277 28.625 Atomic orbital electron populations 1.20671 0.85158 1.04627 1.04347 1.23573 0.98571 0.83283 0.86959 1.68319 1.09612 1.30121 1.16101 1.23485 0.89776 0.97618 0.86655 1.21588 0.96031 0.96473 1.12426 1.17751 0.85820 0.84245 0.76448 1.90747 1.69482 1.30768 1.49371 1.45899 1.07582 1.08672 1.73882 1.22499 0.77959 1.00259 0.97513 0.86361 1.23483 0.97988 0.96926 0.98825 1.22836 0.96075 0.89738 0.95367 0.88121 1.60012 1.03557 1.19000 1.45960 1.21726 0.91762 0.96530 0.98301 1.19826 0.83984 0.89618 0.84082 1.90521 1.48327 1.48151 1.59932 1.41866 1.14434 1.10858 1.52786 1.19708 1.01014 0.86361 1.35933 0.87917 1.25264 0.95527 0.99687 0.97421 1.69612 1.07868 1.32760 1.44000 0.85853 0.77457 0.81943 0.79011 1.20434 1.20905 1.19401 1.24284 0.99298 1.01103 0.97516 1.22034 0.88771 0.95743 0.84039 1.21114 1.00550 0.90417 1.04858 1.68294 1.09173 1.30114 1.16520 0.89054 0.89144 0.89227 0.81060 0.76447 0.90433 0.88944 0.82804 0.93719 0.89511 0.77443 0.91857 0.89411 0.90871 0.88994 0.90510 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.31 36.00 0.37 -0.10 16 2 C 0.34 3.01 7.64 -157.07 -1.20 1.81 16 3 N -0.53 -4.78 10.32 -10.39 -0.11 -4.89 16 4 C 0.19 1.49 10.80 -16.78 -0.18 1.31 16 5 C -0.26 -2.30 5.91 -104.69 -0.62 -2.92 16 6 C 0.57 5.42 7.73 -12.33 -0.10 5.33 16 7 O -0.53 -6.27 13.13 5.32 0.07 -6.20 16 8 N -0.71 -5.42 5.31 -53.96 -0.29 -5.70 16 9 C 0.12 1.04 4.24 -67.12 -0.28 0.76 16 10 H 0.12 1.10 7.46 -51.93 -0.39 0.71 16 11 C -0.13 -1.18 7.62 -25.92 -0.20 -1.38 16 12 C 0.07 0.77 4.19 -66.81 -0.28 0.49 16 13 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 14 N -0.65 -9.73 6.25 -107.04 -0.67 -10.39 16 15 C 0.05 0.83 6.01 -4.98 -0.03 0.80 16 16 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 17 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 18 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.18 -1.72 7.50 -25.83 -0.19 -1.92 16 28 C 0.24 2.31 6.87 -81.81 -0.56 1.75 16 29 C -0.11 -0.93 9.00 36.01 0.32 -0.60 16 30 N -0.53 -5.14 10.26 -6.67 -0.07 -5.20 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.17 0.78 6.58 -52.49 -0.35 0.43 16 35 H 0.40 2.16 6.90 -40.82 -0.28 1.88 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.35 5.40 7.90 -39.29 -0.31 5.09 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 41 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.09 0.84 7.83 -51.92 -0.41 0.44 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.11 0.97 5.94 -51.93 -0.31 0.67 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -33.98 396.29 -9.14 -43.12 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.51 Total: 13.26 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.27 Total: 7.46 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.46 Total: -63.97 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.16 Total: -21.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.98 -9.14 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480227681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.926 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds