Wall clock time and date at job start Wed Apr 1 2020 04:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95128 * 2 1 4 4 C 1.32132 * 120.96481 * 179.67801 * 3 2 1 5 5 C 1.39963 * 118.92375 * 0.61404 * 4 3 2 6 6 C 1.47833 * 120.94092 * 179.69681 * 5 4 3 7 7 O 1.21549 * 120.00108 * 173.88113 * 6 5 4 8 8 N 1.34779 * 119.99810 * 353.87714 * 6 5 4 9 9 C 1.46507 * 119.99762 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84873 * 23.80238 * 9 8 6 11 11 C 1.53776 * 113.61191 * 155.00331 * 9 8 6 12 12 C 1.53783 * 87.17265 * 139.93732 * 11 9 8 13 13 H 1.08993 * 113.61262 * 89.15665 * 12 11 9 14 14 N 1.46905 * 113.61174 * 220.05799 * 12 11 9 15 15 C 1.46895 * 110.99776 * 204.99587 * 14 12 11 16 16 C 1.50701 * 109.47400 * 180.02562 * 15 14 12 17 17 O 1.21300 * 119.99429 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00525 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00451 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00282 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99797 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47524 * 90.00092 * 23 21 19 25 25 H 1.48504 * 109.46502 * 209.99759 * 23 21 19 26 26 H 1.48499 * 109.47317 * 329.99235 * 23 21 19 27 27 C 1.53780 * 113.61106 * 252.49936 * 9 8 6 28 28 C 1.39931 * 118.12135 * 359.42613 * 5 4 3 29 29 C 1.50705 * 120.53906 * 180.29485 * 28 5 4 30 30 N 1.31852 * 118.95191 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47210 * 269.97328 * 1 2 3 32 32 H 1.08999 * 109.47071 * 29.97969 * 1 2 3 33 33 H 1.09001 * 109.46822 * 149.97708 * 1 2 3 34 34 H 1.08002 * 120.54160 * 180.31077 * 4 3 2 35 35 H 0.96994 * 119.99965 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.61176 * 254.52709 * 11 9 8 37 37 H 1.08999 * 113.61560 * 25.34399 * 11 9 8 38 38 H 1.00901 * 110.99705 * 81.05208 * 14 12 11 39 39 H 1.09001 * 109.47343 * 300.00270 * 15 14 12 40 40 H 1.09000 * 109.46982 * 60.00587 * 15 14 12 41 41 H 0.97009 * 119.99930 * 0.02562 * 18 16 15 42 42 H 0.97005 * 119.99721 * 180.02562 * 22 21 19 43 43 H 1.09010 * 113.61554 * 334.56775 * 27 9 8 44 44 H 1.08997 * 113.61796 * 105.38608 * 27 9 8 45 45 H 1.08994 * 109.47000 * 83.73004 * 29 28 5 46 46 H 1.09000 * 109.46774 * 203.73215 * 29 28 5 47 47 H 1.09000 * 109.46837 * 323.73451 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0064 5 6 4.1855 0.0000 0.0000 6 6 5.6638 0.0000 0.0000 7 8 6.2715 -1.0472 0.1067 8 7 6.3377 1.1612 -0.1183 9 6 7.8028 1.1611 -0.1189 10 1 8.2258 0.2057 -0.4294 11 6 8.4185 2.3713 -0.8407 12 6 9.4657 2.4133 0.2847 13 1 10.3452 1.8011 0.0858 14 7 9.8034 3.7740 0.7237 15 6 11.1467 3.8177 1.3164 16 6 11.4570 5.2258 1.7544 17 8 10.6392 6.1064 1.5894 18 7 12.6430 5.5069 2.3294 19 6 12.9255 6.7881 2.7274 20 1 12.1975 7.5721 2.5805 21 6 14.1486 7.0779 3.3197 22 7 15.0347 6.1240 3.4980 23 14 14.5331 8.8234 3.8625 24 1 14.0891 9.0144 5.2666 25 1 15.9963 9.0596 3.7697 26 1 13.8199 9.7839 2.9827 27 6 8.4192 1.7186 1.1749 28 6 3.4661 -1.2002 -0.0005 29 6 4.1857 -2.5243 -0.0004 30 7 2.1452 -1.1537 -0.0005 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9817 2.1494 0.0114 35 1 5.8527 1.9969 -0.2032 36 1 8.8371 2.1302 -1.8178 37 1 7.7664 3.2444 -0.8633 38 1 9.1122 4.1280 1.3679 39 1 11.1850 3.1525 2.1791 40 1 11.8806 3.4967 0.5772 41 1 13.2972 4.8028 2.4611 42 1 15.8884 6.3263 3.9119 43 1 7.7679 2.4138 1.7047 44 1 8.8371 0.9506 1.8258 45 1 4.4574 -2.7901 1.0211 46 1 3.5327 -3.2927 -0.4144 47 1 5.0874 -2.4477 -0.6080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480227681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:09 Heat of formation + Delta-G solvation = -27.168274 kcal Electronic energy + Delta-G solvation = -28686.543596 eV Core-core repulsion = 24482.978367 eV Total energy + Delta-G solvation = -4203.565228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50239 -41.04812 -40.14748 -39.34855 -36.19564 -35.83649 -35.28169 -34.71519 -33.51685 -33.16304 -30.21913 -29.68120 -28.34580 -26.61259 -26.15479 -25.18953 -24.32705 -23.13747 -21.85174 -21.33714 -20.77361 -19.88626 -19.14197 -18.63254 -17.83723 -17.20031 -17.01113 -16.88549 -16.78727 -16.34877 -16.09923 -15.88868 -15.68464 -15.63599 -14.83893 -14.74705 -14.49958 -14.32913 -14.20100 -14.09898 -13.54673 -13.48738 -13.39886 -13.36498 -13.28559 -13.15999 -13.11926 -12.82744 -12.74701 -12.41641 -12.13126 -12.11202 -11.92475 -11.77179 -11.69702 -11.49755 -10.83522 -10.63070 -10.46225 -10.32123 -10.05724 -10.00754 -9.21998 -8.46187 -5.94913 -0.72664 -0.13090 1.38515 1.42495 1.55120 1.65424 1.95504 2.06505 2.29980 2.57662 2.77275 2.88969 2.98414 3.21390 3.23355 3.45673 3.52561 3.64185 3.71522 3.80826 3.93911 4.02750 4.06608 4.33128 4.34751 4.49854 4.56006 4.61400 4.64836 4.66469 4.68141 4.78495 4.81258 4.82711 4.88672 5.00937 5.04191 5.12379 5.18343 5.33220 5.41524 5.52105 5.76828 5.93819 6.16025 6.38558 6.44482 6.60832 6.87274 7.04531 7.13280 7.57374 8.12446 8.71090 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.001519 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.778035 B =18428.623472 C =19155.741249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.331 3.669 3 N -0.541 5.541 4 C 0.196 3.804 5 C -0.266 4.266 6 C 0.573 3.427 7 O -0.554 6.554 8 N -0.699 5.699 9 C 0.132 3.868 10 H 0.114 0.886 11 C -0.123 4.123 12 C 0.066 3.934 13 H 0.110 0.890 14 N -0.666 5.666 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.176 4.176 28 C 0.226 3.774 29 C -0.106 4.106 30 N -0.541 5.541 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.202 0.798 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.346 0.654 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.490 -17.029 -8.256 30.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 N -0.256 5.256 4 C 0.029 3.971 5 C -0.274 4.274 6 C 0.360 3.640 7 O -0.433 6.433 8 N -0.350 5.350 9 C 0.027 3.973 10 H 0.132 0.868 11 C -0.162 4.162 12 C -0.045 4.045 13 H 0.128 0.872 14 N -0.297 5.297 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.216 4.216 28 C 0.080 3.920 29 C -0.163 4.163 30 N -0.257 5.257 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.219 0.781 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.166 0.834 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.180 -16.965 -8.841 30.833 hybrid contribution 1.363 0.557 1.364 2.007 sum -22.818 -16.408 -7.477 29.083 Atomic orbital electron populations 1.20801 0.82972 1.05528 1.05313 1.24244 1.00030 0.83052 0.86028 1.68422 1.10134 1.30238 1.16805 1.23964 0.89577 0.98390 0.85153 1.21556 0.95671 0.96819 1.13358 1.17824 0.86010 0.84183 0.75992 1.90737 1.70000 1.31808 1.50796 1.45775 1.07282 1.08825 1.73069 1.22321 0.78311 0.99907 0.96772 0.86779 1.23411 0.97222 0.96987 0.98585 1.22989 0.97134 0.87877 0.96487 0.87155 1.60043 1.02367 1.21744 1.45583 1.21589 0.93484 0.92144 0.99618 1.20945 0.82612 0.91858 0.82162 1.90488 1.49284 1.50281 1.60995 1.41944 1.15378 1.10211 1.53548 1.19678 1.01484 0.87265 1.38051 0.90289 1.26028 0.94872 1.03490 0.96823 1.69672 1.08148 1.34285 1.43982 0.84932 0.77639 0.77211 0.78582 1.19661 1.19597 1.19781 1.24219 0.98884 1.00825 0.97684 1.22290 0.89126 0.96468 0.84113 1.21048 1.00227 0.90384 1.04656 1.68351 1.09254 1.30713 1.17396 0.87875 0.88140 0.88391 0.78148 0.74997 0.89596 0.88705 0.83374 0.91640 0.87709 0.76980 0.91325 0.89371 0.91108 0.89072 0.89596 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.31 71.23 0.73 -0.06 16 2 C 0.33 5.51 7.64 138.70 1.06 6.57 16 3 N -0.54 -9.11 10.32 -186.80 -1.93 -11.04 16 4 C 0.20 2.76 10.80 85.07 0.92 3.68 16 5 C -0.27 -4.52 5.91 -19.91 -0.12 -4.64 16 6 C 0.57 10.30 7.73 86.78 0.67 10.97 16 7 O -0.55 -12.95 13.13 -3.87 -0.05 -13.00 16 8 N -0.70 -9.42 5.31 -442.92 -2.35 -11.77 16 9 C 0.13 2.01 4.24 45.51 0.19 2.20 16 10 H 0.11 1.93 7.46 -2.39 -0.02 1.91 16 11 C -0.12 -1.91 7.62 31.12 0.24 -1.68 16 12 C 0.07 1.28 4.19 45.50 0.19 1.47 16 13 H 0.11 1.97 7.87 -2.39 -0.02 1.95 16 14 N -0.67 -18.86 6.25 -492.55 -3.08 -21.94 16 15 C 0.06 2.07 6.01 85.56 0.51 2.58 16 16 C 0.44 20.27 7.82 87.66 0.69 20.96 16 17 O -0.62 -33.83 15.78 -3.09 -0.05 -33.88 16 18 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 19 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 23 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 C -0.18 -3.02 7.50 31.18 0.23 -2.79 16 28 C 0.23 4.26 6.87 42.92 0.29 4.56 16 29 C -0.11 -1.75 9.00 71.24 0.64 -1.11 16 30 N -0.54 -10.27 10.26 -175.02 -1.79 -12.07 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.20 1.34 6.58 -2.91 -0.02 1.33 16 35 H 0.41 3.50 6.90 -92.71 -0.64 2.86 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 38 H 0.35 10.33 7.90 -89.69 -0.71 9.62 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.10 3.04 8.13 -2.39 -0.02 3.02 16 41 H 0.40 19.05 7.90 -92.70 -0.73 18.31 16 42 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 43 H 0.09 1.54 7.83 -2.38 -0.02 1.52 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.10 1.82 5.94 -2.39 -0.01 1.80 16 Total: -1.00 -73.59 396.29 -2.06 -75.65 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -1.03 Total: 38.66 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 7.54 Total: 24.43 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -10.49 Total: -136.51 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.10 Total: -46.88 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.59 -2.06 -75.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480227681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.480 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds