Wall clock time and date at job start Wed Apr 1 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47461 * 2 1 4 4 F 1.39908 * 109.47126 * 239.99697 * 2 1 3 5 5 C 1.53005 * 109.46800 * 120.00167 * 2 1 3 6 6 C 1.50698 * 109.47045 * 179.97438 * 5 2 1 7 7 O 1.21290 * 119.99834 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00296 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00318 * 185.19000 * 8 6 5 10 10 C 1.53006 * 109.47210 * 183.94660 * 9 8 6 11 11 C 1.52999 * 109.46969 * 63.95184 * 9 8 6 12 12 N 1.46907 * 109.47277 * 59.99896 * 11 9 8 13 13 C 1.46902 * 111.00023 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46938 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99876 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99697 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99728 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00076 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99838 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00236 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47335 * 89.99847 * 21 19 17 23 23 H 1.48505 * 109.47028 * 209.99713 * 21 19 17 24 24 H 1.48498 * 109.46992 * 329.99483 * 21 19 17 25 25 C 1.52994 * 109.47682 * 303.95092 * 9 8 6 26 26 C 1.53001 * 117.52000 * 228.45021 * 25 9 8 27 27 C 1.52998 * 60.00223 * 107.48050 * 26 25 9 28 28 H 1.08998 * 109.47252 * 300.00133 * 1 2 3 29 29 H 1.08999 * 109.46678 * 60.00119 * 1 2 3 30 30 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47185 * 60.00205 * 5 2 1 32 32 H 1.08998 * 109.46973 * 299.99871 * 5 2 1 33 33 H 0.97001 * 119.99979 * 5.20019 * 8 6 5 34 34 H 1.09001 * 109.46751 * 180.02562 * 10 9 8 35 35 H 1.08993 * 109.47469 * 300.00439 * 10 9 8 36 36 H 1.09001 * 109.46417 * 60.00591 * 10 9 8 37 37 H 1.09004 * 109.47388 * 179.97438 * 11 9 8 38 38 H 1.09003 * 109.47361 * 299.99784 * 11 9 8 39 39 H 1.00895 * 111.00069 * 56.04763 * 12 11 9 40 40 H 1.08999 * 109.46646 * 299.99956 * 13 12 11 41 41 H 1.08997 * 109.46936 * 59.99719 * 13 12 11 42 42 H 0.97003 * 120.00542 * 0.02562 * 16 14 13 43 43 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 44 44 H 1.08999 * 115.55040 * 82.74398 * 25 9 8 45 45 H 1.09007 * 117.49710 * 214.96618 * 26 25 9 46 46 H 1.08997 * 117.50077 * 359.97438 * 26 25 9 47 47 H 1.09004 * 117.49738 * 252.51484 * 27 26 25 48 48 H 1.08997 * 117.52181 * 107.48075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 3.5469 -0.7219 1.2490 7 8 4.1534 -0.1974 0.3389 8 7 4.2208 -1.3052 2.2600 9 6 5.6813 -1.2076 2.3193 10 6 6.2000 -2.0316 3.4996 11 6 6.0876 0.2561 2.5016 12 7 5.5112 0.7726 3.7503 13 6 5.8808 2.1790 3.9586 14 6 5.2722 2.6729 5.2458 15 8 4.5967 1.9268 5.9227 16 7 5.4786 3.9436 5.6446 17 6 4.9245 4.3931 6.8154 18 1 4.3231 3.7288 7.4182 19 6 5.1369 5.7033 7.2264 20 7 5.8683 6.5118 6.4927 21 14 4.3826 6.3155 8.8219 22 1 5.3280 6.0736 9.9412 23 1 4.1067 7.7706 8.7127 24 1 3.1134 5.5891 9.0801 25 6 6.2817 -1.7454 1.0189 26 6 7.4316 -2.7483 1.1329 27 6 6.0457 -3.2206 0.6889 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6766 -1.7490 1.2492 32 1 1.6766 -0.2075 2.1392 33 1 3.7388 -1.7897 2.9483 34 1 7.2866 -1.9586 3.5440 35 1 5.7723 -1.6485 4.4261 36 1 5.9105 -3.0744 3.3697 37 1 7.1743 0.3287 2.5462 38 1 5.7182 0.8432 1.6608 39 1 5.7874 0.2054 4.5377 40 1 6.9660 2.2653 4.0127 41 1 5.5095 2.7790 3.1278 42 1 6.0185 4.5404 5.1031 43 1 6.0168 7.4263 6.7798 44 1 6.3083 -1.0416 0.1870 45 1 8.2147 -2.7042 0.3758 46 1 7.7609 -3.0248 2.1344 47 1 5.4630 -3.8081 1.3985 48 1 5.9166 -3.4873 -0.3601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481941018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:39 Heat of formation + Delta-G solvation = -146.866087 kcal Electronic energy + Delta-G solvation = -31938.051967 eV Core-core repulsion = 27278.607066 eV Total energy + Delta-G solvation = -4659.444901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.86036 -46.84203 -40.44048 -38.27687 -37.90053 -35.54332 -34.04638 -33.65101 -33.25192 -31.22950 -30.66042 -28.51975 -27.51318 -25.74240 -24.05966 -22.84478 -22.27907 -21.89520 -20.75107 -19.37028 -18.95449 -17.88684 -17.62874 -17.57637 -16.77177 -16.53258 -16.14567 -15.83633 -15.50914 -15.11005 -14.73144 -14.53893 -14.47132 -14.04727 -13.78749 -13.70206 -13.43145 -13.27020 -13.19761 -13.02777 -12.95298 -12.76950 -12.74611 -12.38333 -12.27499 -12.23699 -11.83541 -11.65088 -11.50433 -11.44481 -11.40274 -11.11342 -11.02394 -10.94635 -10.55990 -10.39162 -10.28154 -10.20207 -9.57824 -9.49505 -8.98505 -8.41429 -8.00578 -7.93421 -6.40085 -3.81088 2.68393 2.94847 3.18158 3.26673 3.32422 3.64387 3.80216 3.93262 3.93341 4.07017 4.25239 4.28992 4.34218 4.63406 4.69841 4.84024 4.92656 4.94449 4.96665 5.01526 5.09727 5.15613 5.25992 5.27786 5.32829 5.45738 5.53996 5.57671 5.60900 5.63234 5.67042 5.72664 5.88398 5.95823 5.98232 6.05629 6.08927 6.22494 6.29915 6.54571 7.24669 7.53375 7.56116 7.72391 8.07805 8.28307 8.62930 9.19065 9.56430 10.07619 10.77694 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.002860 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.189870 B = 9786.554636 C =11661.704148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.308 3.692 3 F -0.189 7.189 4 F -0.196 7.196 5 C -0.191 4.191 6 C 0.525 3.475 7 O -0.523 6.523 8 N -0.703 5.703 9 C 0.215 3.785 10 C -0.166 4.166 11 C 0.050 3.950 12 N -0.663 5.663 13 C 0.051 3.949 14 C 0.443 3.557 15 O -0.586 6.586 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.148 4.148 26 C -0.184 4.184 27 C -0.170 4.170 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.344 0.656 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -19.192 -12.432 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.271 3.729 3 F -0.170 7.170 4 F -0.177 7.177 5 C -0.232 4.232 6 C 0.311 3.689 7 O -0.398 6.398 8 N -0.354 5.354 9 C 0.129 3.871 10 C -0.223 4.223 11 C -0.080 4.080 12 N -0.296 5.296 13 C -0.082 4.082 14 C 0.228 3.772 15 O -0.470 6.470 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.167 4.167 26 C -0.221 4.221 27 C -0.207 4.207 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.164 0.836 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.413 -18.905 -12.890 23.303 hybrid contribution 0.775 0.599 0.956 1.369 sum -3.638 -18.305 -11.934 22.153 Atomic orbital electron populations 1.22805 0.91535 1.05278 1.05731 1.20570 0.92853 0.76282 0.83195 1.93071 1.90498 1.36727 1.96731 1.93027 1.90624 1.80834 1.53199 1.22853 0.95731 1.04589 1.00025 1.19913 0.88720 0.78185 0.82126 1.90726 1.69610 1.44165 1.35328 1.45737 1.06631 1.55749 1.27255 1.19684 0.79550 0.94643 0.93219 1.22248 1.02259 0.99912 0.97930 1.22341 0.96617 0.94583 0.94480 1.60050 1.63100 1.02169 1.04244 1.21657 0.97739 0.90454 0.98310 1.19800 0.86099 0.83468 0.87785 1.90495 1.43340 1.56031 1.57144 1.41870 1.46232 1.09903 1.22015 1.19690 1.28728 0.95879 0.98600 0.87965 1.25266 0.97260 0.95908 0.99537 1.69616 1.38905 1.07095 1.38635 0.85860 0.79434 0.77759 0.81236 1.20455 1.20925 1.19424 1.22597 1.01839 0.92785 0.99486 1.23167 0.91846 1.04133 1.02976 1.22797 0.99257 0.96959 1.01729 0.88981 0.89812 0.89359 0.86490 0.85579 0.76636 0.90560 0.90731 0.91713 0.94730 0.89367 0.83596 0.94013 0.89684 0.77445 0.91870 0.86463 0.89001 0.88225 0.89127 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 9.38 37.16 0.35 -1.06 16 2 C 0.31 3.46 1.85 -26.73 -0.05 3.41 16 3 F -0.19 -2.88 16.15 2.25 0.04 -2.84 16 4 F -0.20 -2.62 16.14 2.25 0.04 -2.58 16 5 C -0.19 -1.80 5.30 -27.88 -0.15 -1.95 16 6 C 0.53 6.64 7.01 -10.99 -0.08 6.56 16 7 O -0.52 -8.49 11.66 5.55 0.06 -8.43 16 8 N -0.70 -7.46 4.86 -47.61 -0.23 -7.69 16 9 C 0.22 2.36 0.65 -131.82 -0.09 2.27 16 10 C -0.17 -1.48 6.89 37.16 0.26 -1.22 16 11 C 0.05 0.69 4.52 -3.82 -0.02 0.67 16 12 N -0.66 -10.72 5.93 -115.05 -0.68 -11.40 16 13 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 14 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 15 O -0.59 -15.69 15.78 5.55 0.09 -15.60 16 16 N -0.56 -14.52 5.29 -10.96 -0.06 -14.57 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 21 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.15 -1.60 4.05 -90.62 -0.37 -1.97 16 26 C -0.18 -1.61 9.61 -26.73 -0.26 -1.87 16 27 C -0.17 -1.56 9.81 -26.73 -0.26 -1.83 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.40 3.34 8.48 -40.82 -0.35 2.99 16 34 H 0.08 0.64 6.84 -51.93 -0.36 0.28 16 35 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 36 H 0.06 0.48 7.01 -51.93 -0.36 0.11 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.44 6.65 -51.93 -0.35 1.09 16 39 H 0.34 5.51 6.47 -39.29 -0.25 5.26 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.12 1.58 7.18 -51.93 -0.37 1.21 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.77 5.87 -51.93 -0.31 0.47 16 47 H 0.09 0.75 7.42 -51.93 -0.39 0.36 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -34.60 395.23 -7.24 -41.84 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.13 Total: 16.95 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.02 Total: 6.38 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.25 Total: -57.78 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.15 Total: -24.03 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.60 -7.24 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481941018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.030 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds