Wall clock time and date at job start Wed Apr 1 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47461 * 2 1 4 4 F 1.39908 * 109.47126 * 239.99697 * 2 1 3 5 5 C 1.53005 * 109.46800 * 120.00167 * 2 1 3 6 6 C 1.50698 * 109.47045 * 179.97438 * 5 2 1 7 7 O 1.21290 * 119.99834 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00296 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00318 * 185.19000 * 8 6 5 10 10 C 1.53006 * 109.47210 * 183.94660 * 9 8 6 11 11 C 1.52999 * 109.46969 * 63.95184 * 9 8 6 12 12 N 1.46907 * 109.47277 * 59.99896 * 11 9 8 13 13 C 1.46902 * 111.00023 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46938 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99876 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99697 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99728 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00076 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99838 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00236 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47335 * 89.99847 * 21 19 17 23 23 H 1.48505 * 109.47028 * 209.99713 * 21 19 17 24 24 H 1.48498 * 109.46992 * 329.99483 * 21 19 17 25 25 C 1.52994 * 109.47682 * 303.95092 * 9 8 6 26 26 C 1.53001 * 117.52000 * 228.45021 * 25 9 8 27 27 C 1.52998 * 60.00223 * 107.48050 * 26 25 9 28 28 H 1.08998 * 109.47252 * 300.00133 * 1 2 3 29 29 H 1.08999 * 109.46678 * 60.00119 * 1 2 3 30 30 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47185 * 60.00205 * 5 2 1 32 32 H 1.08998 * 109.46973 * 299.99871 * 5 2 1 33 33 H 0.97001 * 119.99979 * 5.20019 * 8 6 5 34 34 H 1.09001 * 109.46751 * 180.02562 * 10 9 8 35 35 H 1.08993 * 109.47469 * 300.00439 * 10 9 8 36 36 H 1.09001 * 109.46417 * 60.00591 * 10 9 8 37 37 H 1.09004 * 109.47388 * 179.97438 * 11 9 8 38 38 H 1.09003 * 109.47361 * 299.99784 * 11 9 8 39 39 H 1.00895 * 111.00069 * 56.04763 * 12 11 9 40 40 H 1.08999 * 109.46646 * 299.99956 * 13 12 11 41 41 H 1.08997 * 109.46936 * 59.99719 * 13 12 11 42 42 H 0.97003 * 120.00542 * 0.02562 * 16 14 13 43 43 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 44 44 H 1.08999 * 115.55040 * 82.74398 * 25 9 8 45 45 H 1.09007 * 117.49710 * 214.96618 * 26 25 9 46 46 H 1.08997 * 117.50077 * 359.97438 * 26 25 9 47 47 H 1.09004 * 117.49738 * 252.51484 * 27 26 25 48 48 H 1.08997 * 117.52181 * 107.48075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 3.5469 -0.7219 1.2490 7 8 4.1534 -0.1974 0.3389 8 7 4.2208 -1.3052 2.2600 9 6 5.6813 -1.2076 2.3193 10 6 6.2000 -2.0316 3.4996 11 6 6.0876 0.2561 2.5016 12 7 5.5112 0.7726 3.7503 13 6 5.8808 2.1790 3.9586 14 6 5.2722 2.6729 5.2458 15 8 4.5967 1.9268 5.9227 16 7 5.4786 3.9436 5.6446 17 6 4.9245 4.3931 6.8154 18 1 4.3231 3.7288 7.4182 19 6 5.1369 5.7033 7.2264 20 7 5.8683 6.5118 6.4927 21 14 4.3826 6.3155 8.8219 22 1 5.3280 6.0736 9.9412 23 1 4.1067 7.7706 8.7127 24 1 3.1134 5.5891 9.0801 25 6 6.2817 -1.7454 1.0189 26 6 7.4316 -2.7483 1.1329 27 6 6.0457 -3.2206 0.6889 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6766 -1.7490 1.2492 32 1 1.6766 -0.2075 2.1392 33 1 3.7388 -1.7897 2.9483 34 1 7.2866 -1.9586 3.5440 35 1 5.7723 -1.6485 4.4261 36 1 5.9105 -3.0744 3.3697 37 1 7.1743 0.3287 2.5462 38 1 5.7182 0.8432 1.6608 39 1 5.7874 0.2054 4.5377 40 1 6.9660 2.2653 4.0127 41 1 5.5095 2.7790 3.1278 42 1 6.0185 4.5404 5.1031 43 1 6.0168 7.4263 6.7798 44 1 6.3083 -1.0416 0.1870 45 1 8.2147 -2.7042 0.3758 46 1 7.7609 -3.0248 2.1344 47 1 5.4630 -3.8081 1.3985 48 1 5.9166 -3.4873 -0.3601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481941018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:39 Heat of formation + Delta-G solvation = -172.532577 kcal Electronic energy + Delta-G solvation = -31939.164950 eV Core-core repulsion = 27278.607066 eV Total energy + Delta-G solvation = -4660.557884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.82146 -47.84289 -41.37339 -40.11264 -38.88714 -36.77687 -35.87317 -34.83990 -34.07713 -33.26576 -31.64689 -29.24912 -28.80732 -27.16242 -25.68640 -23.71913 -23.03671 -22.91691 -21.63553 -21.15950 -20.03309 -19.84150 -18.54504 -18.46326 -18.03717 -17.56658 -17.27201 -17.05828 -16.70240 -16.43339 -16.04437 -15.91713 -15.88221 -15.41943 -15.01020 -14.79280 -14.66645 -14.45699 -14.35198 -14.20248 -13.82430 -13.68972 -13.50539 -13.46374 -13.38810 -13.16092 -13.03507 -13.00040 -12.92797 -12.76982 -12.46450 -12.41181 -12.14372 -12.11982 -11.94823 -11.84570 -11.50414 -11.36330 -11.08462 -10.52689 -10.37198 -10.02480 -9.89302 -9.34851 -8.46713 -5.96062 1.38189 1.41809 1.55073 1.75353 2.03245 2.13081 2.28714 2.83900 2.88932 3.03309 3.20205 3.21045 3.47546 3.53785 3.54182 3.73049 3.89640 3.99048 4.13455 4.16981 4.23622 4.30542 4.38925 4.40134 4.45383 4.46874 4.52488 4.60859 4.67799 4.72335 4.81750 4.87091 4.93419 4.99326 5.03739 5.04274 5.24615 5.28483 5.38802 5.40341 5.64692 5.83434 6.05262 6.44191 6.58307 6.68937 7.11149 7.40190 7.54576 8.08471 8.70883 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.002860 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.189870 B = 9786.554636 C =11661.704148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.289 3.711 3 F -0.220 7.220 4 F -0.213 7.213 5 C -0.186 4.186 6 C 0.513 3.487 7 O -0.566 6.566 8 N -0.694 5.694 9 C 0.218 3.782 10 C -0.160 4.160 11 C 0.056 3.944 12 N -0.665 5.665 13 C 0.064 3.936 14 C 0.443 3.557 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.083 0.917 19 C -0.015 4.015 20 N -0.923 5.923 21 Si 0.995 3.005 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.162 4.162 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.347 0.653 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.394 0.606 43 H 0.277 0.723 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -20.925 -11.364 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.252 3.748 3 F -0.202 7.202 4 F -0.194 7.194 5 C -0.226 4.226 6 C 0.299 3.701 7 O -0.445 6.445 8 N -0.345 5.345 9 C 0.132 3.868 10 C -0.217 4.217 11 C -0.074 4.074 12 N -0.299 5.299 13 C -0.069 4.069 14 C 0.230 3.770 15 O -0.502 6.502 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.101 0.899 19 C -0.215 4.215 20 N -0.564 5.564 21 Si 0.819 3.181 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.184 4.184 26 C -0.206 4.206 27 C -0.199 4.199 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.228 0.772 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.135 0.865 47 H 0.124 0.876 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.824 -20.661 -11.820 24.287 hybrid contribution 0.935 1.113 0.551 1.555 sum -3.890 -19.548 -11.268 22.896 Atomic orbital electron populations 1.22817 0.88103 1.07336 1.06203 1.21314 0.95265 0.74899 0.83300 1.93004 1.91146 1.39143 1.96867 1.92985 1.91108 1.81002 1.54300 1.22938 0.93333 1.06920 0.99427 1.20556 0.90183 0.77531 0.81796 1.90716 1.70765 1.46003 1.37046 1.45726 1.06689 1.55139 1.26992 1.19635 0.79856 0.92966 0.94335 1.22225 1.02706 1.00632 0.96161 1.22299 0.96926 0.96171 0.92027 1.60007 1.63704 1.00949 1.05219 1.21484 0.98470 0.91842 0.95076 1.20656 0.84999 0.82552 0.88800 1.90463 1.44526 1.56638 1.58567 1.41953 1.46634 1.10710 1.21802 1.19701 1.30132 0.96542 0.99851 0.89941 1.26098 0.97242 0.95487 1.02641 1.69689 1.39249 1.07484 1.39953 0.84892 0.78545 0.77441 0.77249 1.19482 1.19775 1.19492 1.22358 1.04400 0.93179 0.98460 1.23265 0.91463 1.01894 1.03986 1.22851 0.99801 0.95340 1.01952 0.87823 0.90052 0.86491 0.82425 0.84461 0.75130 0.89664 0.91463 0.89473 0.93771 0.92296 0.83209 0.91886 0.89606 0.77223 0.91332 0.89869 0.88694 0.86492 0.87570 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 9.38 71.98 0.68 -1.71 16 2 C 0.29 6.41 1.85 30.60 0.06 6.47 16 3 F -0.22 -6.99 16.15 44.97 0.73 -6.27 16 4 F -0.21 -5.77 16.14 44.97 0.73 -5.04 16 5 C -0.19 -3.25 5.30 29.85 0.16 -3.09 16 6 C 0.51 12.87 7.01 87.66 0.61 13.49 16 7 O -0.57 -19.21 11.66 -3.06 -0.04 -19.25 16 8 N -0.69 -13.97 4.86 -422.93 -2.06 -16.02 16 9 C 0.22 4.57 0.65 3.60 0.00 4.57 16 10 C -0.16 -2.44 6.89 71.98 0.50 -1.95 16 11 C 0.06 1.53 4.52 86.30 0.39 1.92 16 12 N -0.66 -21.25 5.93 -517.91 -3.07 -24.32 16 13 C 0.06 2.36 6.17 85.56 0.53 2.89 16 14 C 0.44 21.35 7.82 87.66 0.69 22.04 16 15 O -0.62 -33.34 15.78 -3.07 -0.05 -33.39 16 16 N -0.57 -30.08 5.29 -306.99 -1.62 -31.70 16 17 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 18 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 21 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C -0.16 -3.49 4.05 -10.79 -0.04 -3.53 16 26 C -0.17 -2.61 9.61 30.59 0.29 -2.32 16 27 C -0.16 -2.70 9.81 30.59 0.30 -2.40 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.41 6.02 8.48 -92.71 -0.79 5.24 16 34 H 0.08 1.17 6.84 -2.39 -0.02 1.16 16 35 H 0.07 1.16 6.57 -2.39 -0.02 1.15 16 36 H 0.09 0.96 7.01 -2.39 -0.02 0.95 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 2.00 6.65 -2.39 -0.02 1.99 16 39 H 0.35 10.80 6.47 -89.70 -0.58 10.22 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.39 19.98 7.90 -92.71 -0.73 19.25 16 43 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.08 2.37 7.18 -2.39 -0.02 2.35 16 45 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.12 1.42 5.87 -2.39 -0.01 1.41 16 47 H 0.11 1.43 7.42 -2.38 -0.02 1.41 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -77.70 395.23 1.29 -76.42 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -1.08 Total: 47.14 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.44 Total: 17.85 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -6.47 Total: -122.45 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.08 Total: -52.63 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 1.45 Total: -11.31 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.70 1.29 -76.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481941018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.117 kcal (2) G-P(sol) polarization free energy of solvation -77.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds