Wall clock time and date at job start Wed Apr 1 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50706 * 109.46953 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99692 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00146 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99875 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47037 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.50111 * 304.91662 * 8 7 6 10 10 C 1.53036 * 109.50336 * 184.80416 * 8 7 6 11 11 N 1.46846 * 109.52226 * 180.88040 * 10 8 7 12 12 C 1.46904 * 110.99762 * 185.83605 * 11 10 8 13 13 C 1.50708 * 109.47128 * 169.74147 * 12 11 10 14 14 O 1.21296 * 119.99698 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00187 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99813 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00377 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47144 * 89.99963 * 20 18 16 22 22 H 1.48499 * 109.47518 * 210.00040 * 20 18 16 23 23 H 1.48504 * 109.46882 * 330.00356 * 20 18 16 24 24 C 1.46842 * 111.20300 * 61.73630 * 11 10 8 25 25 C 1.53034 * 109.52360 * 298.26008 * 24 11 10 26 26 C 1.53117 * 109.27770 * 59.17932 * 25 24 11 27 27 F 1.39900 * 109.52534 * 182.44067 * 26 25 24 28 28 F 1.39897 * 109.58211 * 62.28108 * 26 25 24 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 34 34 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 35 35 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 36 36 H 0.96999 * 120.00043 * 359.97438 * 6 4 3 37 37 H 1.09000 * 109.46876 * 299.99570 * 7 6 4 38 38 H 1.08996 * 109.47565 * 59.99371 * 7 6 4 39 39 H 1.09008 * 109.46165 * 300.88845 * 10 8 7 40 40 H 1.09001 * 109.46799 * 60.85684 * 10 8 7 41 41 H 1.09004 * 109.47389 * 289.73995 * 12 11 10 42 42 H 1.09003 * 109.47439 * 49.74227 * 12 11 10 43 43 H 0.97005 * 119.99733 * 359.97438 * 15 13 12 44 44 H 0.96992 * 120.00526 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.46212 * 178.23907 * 24 11 10 46 46 H 1.09004 * 109.45967 * 58.27262 * 24 11 10 47 47 H 1.08994 * 109.50602 * 299.23614 * 25 24 11 48 48 H 1.08999 * 109.50266 * 179.11767 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6858 2.6099 0.0013 8 6 6.1958 4.0524 0.0014 9 1 5.7626 4.5915 -0.8410 10 6 7.7214 4.0550 -0.1193 11 7 8.2129 5.4386 -0.0981 12 6 9.6593 5.4872 -0.3506 13 6 10.0829 6.9166 -0.5714 14 8 9.2606 7.8070 -0.5236 15 7 11.3750 7.2054 -0.8230 16 6 11.7602 8.5056 -1.0244 17 1 11.0283 9.2985 -0.9811 18 6 13.0925 8.8033 -1.2832 19 7 13.9833 7.8386 -1.3355 20 14 13.6175 10.5750 -1.5570 21 1 13.9915 11.1870 -0.2566 22 1 14.7849 10.6093 -2.4742 23 1 12.4934 11.3372 -2.1576 24 6 7.8772 6.1021 1.1681 25 6 6.3562 6.1606 1.3273 26 6 5.7910 4.7377 1.3095 27 9 4.3957 4.7877 1.3988 28 9 6.3031 4.0162 2.3932 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.7358 3.4499 0.0009 37 1 6.0491 2.0956 0.8911 38 1 6.0492 2.0964 -0.8888 39 1 8.1528 3.5035 0.7162 40 1 8.0124 3.5804 -1.0565 41 1 10.1921 5.0790 0.5083 42 1 9.8935 4.8978 -1.2371 43 1 12.0325 6.4932 -0.8615 44 1 14.9132 8.0463 -1.5165 45 1 8.2814 7.1143 1.1661 46 1 8.3078 5.5409 1.9975 47 1 5.9261 6.7333 0.5057 48 1 6.1076 6.6391 2.2745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484192475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:21 Heat of formation + Delta-G solvation = -182.844911 kcal Electronic energy + Delta-G solvation = -31298.104267 eV Core-core repulsion = 26637.099207 eV Total energy + Delta-G solvation = -4661.005060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.20383 -47.15836 -39.99383 -39.15168 -37.60438 -35.55739 -34.60922 -33.97632 -32.59276 -31.77446 -31.23147 -28.62315 -27.38109 -25.78670 -24.68557 -23.27503 -22.57080 -21.86042 -20.70593 -20.02921 -19.26284 -17.93687 -17.60408 -17.38058 -17.00318 -16.64533 -16.26307 -16.08956 -15.90397 -15.11574 -14.98667 -14.64354 -14.61562 -14.26046 -14.08452 -13.97227 -13.77745 -13.63693 -13.46425 -13.35570 -13.27592 -12.84016 -12.61623 -12.46232 -12.20156 -12.16006 -12.10730 -11.97452 -11.57150 -11.51747 -11.40369 -11.37186 -11.15433 -11.07685 -11.02542 -10.44952 -10.36500 -10.27002 -10.05060 -9.53036 -9.31798 -8.59232 -8.08055 -7.98539 -6.46959 -3.88115 2.43705 2.86892 3.13938 3.23477 3.28693 3.48306 3.71613 3.82598 3.91710 4.04287 4.15698 4.31143 4.47125 4.56939 4.66179 4.68514 4.81964 4.92237 5.02746 5.09507 5.13365 5.17704 5.18948 5.27540 5.28668 5.36834 5.40400 5.47504 5.50202 5.57748 5.69476 5.73459 5.76966 5.80801 5.81482 5.97418 6.03472 6.14698 6.18475 6.23980 7.03672 7.14265 7.25048 7.50138 7.99927 8.00159 8.55019 9.12227 9.47924 9.98743 10.70512 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.001908 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.524035 B =14668.837503 C =15021.362585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.512 3.488 5 O -0.543 6.543 6 N -0.731 5.731 7 C 0.120 3.880 8 C -0.132 4.132 9 H 0.117 0.883 10 C 0.062 3.938 11 N -0.515 5.515 12 C 0.047 3.953 13 C 0.442 3.558 14 O -0.579 6.579 15 N -0.561 5.561 16 C -0.301 4.301 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.051 3.949 25 C -0.149 4.149 26 C 0.289 3.711 27 F -0.202 7.202 28 F -0.197 7.197 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.119 0.881 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.376 -11.895 3.541 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.298 3.702 5 O -0.420 6.420 6 N -0.386 5.386 7 C -0.004 4.004 8 C -0.151 4.151 9 H 0.135 0.865 10 C -0.067 4.067 11 N -0.240 5.240 12 C -0.084 4.084 13 C 0.227 3.773 14 O -0.464 6.464 15 N -0.197 5.197 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.541 5.541 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.077 4.077 25 C -0.187 4.187 26 C 0.253 3.747 27 F -0.183 7.183 28 F -0.178 7.178 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.243 0.757 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.053 0.947 47 H 0.124 0.876 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.518 -11.789 3.187 23.877 hybrid contribution 0.900 0.365 0.598 1.141 sum -19.618 -11.424 3.784 23.015 Atomic orbital electron populations 1.21797 0.95463 1.01968 1.01818 1.21279 0.95259 0.94636 1.03565 1.21724 0.91589 1.00270 1.04516 1.20780 0.90448 0.83405 0.75540 1.90703 1.70604 1.31360 1.49377 1.46222 1.07082 1.09508 1.75817 1.21317 0.80298 0.95030 1.03746 1.22430 0.99074 0.96554 0.97074 0.86489 1.21997 0.91224 0.90742 1.02763 1.61510 1.14284 1.13869 1.34300 1.21843 0.87074 0.97866 1.01596 1.19668 0.83396 0.89420 0.84784 1.90481 1.51348 1.48042 1.56516 1.41862 1.06734 1.09385 1.61768 1.19693 0.93464 0.84483 1.45367 0.87851 1.25269 0.95572 0.99763 0.97246 1.69604 1.03003 1.32327 1.49176 0.85857 0.78249 0.81926 0.78248 1.20412 1.20910 1.19398 1.22258 0.93067 1.03180 0.89180 1.22578 0.98047 0.92634 1.05461 1.21285 0.74528 0.93825 0.85082 1.92879 1.31679 1.97112 1.96650 1.92989 1.86707 1.80114 1.57998 0.92405 0.92658 0.92658 0.91260 0.91237 0.88848 0.88837 0.75745 0.90550 0.89993 0.93595 0.88896 0.93036 0.88934 0.77439 0.91805 0.86320 0.94705 0.87628 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.11 -0.83 5.22 -26.73 -0.14 -0.97 16 3 C -0.14 -1.00 5.70 -27.88 -0.16 -1.16 16 4 C 0.51 5.42 7.83 -10.98 -0.09 5.34 16 5 O -0.54 -7.85 15.98 5.56 0.09 -7.76 16 6 N -0.73 -6.93 5.01 -60.30 -0.30 -7.23 16 7 C 0.12 1.22 4.99 -4.04 -0.02 1.20 16 8 C -0.13 -1.33 2.16 -90.54 -0.20 -1.53 16 9 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 10 C 0.06 0.70 4.63 -3.83 -0.02 0.68 16 11 N -0.52 -7.57 4.39 -236.11 -1.04 -8.61 16 12 C 0.05 0.77 5.45 -4.97 -0.03 0.74 16 13 C 0.44 9.72 7.46 -10.98 -0.08 9.64 16 14 O -0.58 -14.48 13.92 5.54 0.08 -14.40 16 15 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16 16 C -0.30 -8.07 9.68 -14.94 -0.14 -8.21 16 17 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 20 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.05 0.74 5.00 -3.84 -0.02 0.72 16 25 C -0.15 -1.78 5.62 -26.65 -0.15 -1.93 16 26 C 0.29 3.24 1.65 -26.61 -0.04 3.20 16 27 F -0.20 -2.15 14.46 2.25 0.03 -2.12 16 28 F -0.20 -2.54 15.54 2.25 0.03 -2.51 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.41 3.21 6.48 -40.82 -0.26 2.95 16 37 H 0.08 0.88 7.61 -51.93 -0.39 0.49 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.52 7.88 -51.92 -0.41 0.11 16 40 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 41 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.09 1.34 7.98 -51.93 -0.41 0.92 16 43 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.12 2.12 5.80 -51.93 -0.30 1.81 16 46 H 0.03 0.49 7.88 -51.93 -0.41 0.08 16 47 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -31.63 391.92 -7.88 -39.51 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.51 Total: 10.70 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.81 Total: 7.76 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.67 Total: -52.55 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.17 Total: -22.16 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.07 Total: -4.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.63 -7.88 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484192475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.333 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds