Wall clock time and date at job start Wed Apr 1 2020 04:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50706 * 109.46953 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99692 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00146 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99875 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47037 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.50111 * 304.91662 * 8 7 6 10 10 C 1.53036 * 109.50336 * 184.80416 * 8 7 6 11 11 N 1.46846 * 109.52226 * 180.88040 * 10 8 7 12 12 C 1.46904 * 110.99762 * 185.83605 * 11 10 8 13 13 C 1.50708 * 109.47128 * 169.74147 * 12 11 10 14 14 O 1.21296 * 119.99698 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00187 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99813 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00377 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47144 * 89.99963 * 20 18 16 22 22 H 1.48499 * 109.47518 * 210.00040 * 20 18 16 23 23 H 1.48504 * 109.46882 * 330.00356 * 20 18 16 24 24 C 1.46842 * 111.20300 * 61.73630 * 11 10 8 25 25 C 1.53034 * 109.52360 * 298.26008 * 24 11 10 26 26 C 1.53117 * 109.27770 * 59.17932 * 25 24 11 27 27 F 1.39900 * 109.52534 * 182.44067 * 26 25 24 28 28 F 1.39897 * 109.58211 * 62.28108 * 26 25 24 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 34 34 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 35 35 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 36 36 H 0.96999 * 120.00043 * 359.97438 * 6 4 3 37 37 H 1.09000 * 109.46876 * 299.99570 * 7 6 4 38 38 H 1.08996 * 109.47565 * 59.99371 * 7 6 4 39 39 H 1.09008 * 109.46165 * 300.88845 * 10 8 7 40 40 H 1.09001 * 109.46799 * 60.85684 * 10 8 7 41 41 H 1.09004 * 109.47389 * 289.73995 * 12 11 10 42 42 H 1.09003 * 109.47439 * 49.74227 * 12 11 10 43 43 H 0.97005 * 119.99733 * 359.97438 * 15 13 12 44 44 H 0.96992 * 120.00526 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.46212 * 178.23907 * 24 11 10 46 46 H 1.09004 * 109.45967 * 58.27262 * 24 11 10 47 47 H 1.08994 * 109.50602 * 299.23614 * 25 24 11 48 48 H 1.08999 * 109.50266 * 179.11767 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6858 2.6099 0.0013 8 6 6.1958 4.0524 0.0014 9 1 5.7626 4.5915 -0.8410 10 6 7.7214 4.0550 -0.1193 11 7 8.2129 5.4386 -0.0981 12 6 9.6593 5.4872 -0.3506 13 6 10.0829 6.9166 -0.5714 14 8 9.2606 7.8070 -0.5236 15 7 11.3750 7.2054 -0.8230 16 6 11.7602 8.5056 -1.0244 17 1 11.0283 9.2985 -0.9811 18 6 13.0925 8.8033 -1.2832 19 7 13.9833 7.8386 -1.3355 20 14 13.6175 10.5750 -1.5570 21 1 13.9915 11.1870 -0.2566 22 1 14.7849 10.6093 -2.4742 23 1 12.4934 11.3372 -2.1576 24 6 7.8772 6.1021 1.1681 25 6 6.3562 6.1606 1.3273 26 6 5.7910 4.7377 1.3095 27 9 4.3957 4.7877 1.3988 28 9 6.3031 4.0162 2.3932 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.7358 3.4499 0.0009 37 1 6.0491 2.0956 0.8911 38 1 6.0492 2.0964 -0.8888 39 1 8.1528 3.5035 0.7162 40 1 8.0124 3.5804 -1.0565 41 1 10.1921 5.0790 0.5083 42 1 9.8935 4.8978 -1.2371 43 1 12.0325 6.4932 -0.8615 44 1 14.9132 8.0463 -1.5165 45 1 8.2814 7.1143 1.1661 46 1 8.3078 5.5409 1.9975 47 1 5.9261 6.7333 0.5057 48 1 6.1076 6.6391 2.2745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484192475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:20 Heat of formation + Delta-G solvation = -205.038922 kcal Electronic energy + Delta-G solvation = -31299.066671 eV Core-core repulsion = 26637.099207 eV Total energy + Delta-G solvation = -4661.967465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.13129 -48.09053 -40.87007 -40.51968 -39.03103 -36.51543 -35.83586 -35.24506 -33.72814 -33.18238 -32.67050 -29.35312 -28.70518 -26.64503 -26.41289 -24.32452 -23.51718 -22.61132 -21.55605 -20.96983 -20.91096 -19.84691 -18.53468 -18.21111 -18.04003 -17.70245 -17.37275 -17.06295 -16.77863 -16.63013 -16.23705 -16.15929 -15.46212 -15.39645 -15.37043 -15.17499 -15.03236 -14.63753 -14.39040 -14.26672 -14.07619 -13.96371 -13.71155 -13.50715 -13.41195 -13.24193 -13.16244 -12.94319 -12.82069 -12.63398 -12.50505 -12.39746 -12.35226 -12.18593 -12.11037 -12.01979 -11.62474 -11.49361 -11.30126 -10.91771 -10.26712 -10.15116 -9.97422 -9.32023 -8.44374 -5.92501 1.39228 1.43530 1.55541 1.63705 2.07315 2.08159 2.30324 2.56460 2.68679 2.98087 3.13753 3.23137 3.30189 3.42837 3.77861 3.79507 3.93583 4.04673 4.09402 4.12612 4.15212 4.26689 4.32285 4.43987 4.51445 4.53314 4.56653 4.58327 4.66824 4.70683 4.73724 4.77123 4.88000 4.93052 4.98173 5.03308 5.23030 5.28399 5.36021 5.43564 5.47737 5.78906 6.00520 6.09656 6.50242 6.62861 7.15637 7.22545 7.59742 8.14730 8.72868 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.001908 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.524035 B =14668.837503 C =15021.362585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.506 3.494 5 O -0.588 6.588 6 N -0.724 5.724 7 C 0.125 3.875 8 C -0.120 4.120 9 H 0.129 0.871 10 C 0.062 3.938 11 N -0.527 5.527 12 C 0.058 3.942 13 C 0.443 3.557 14 O -0.611 6.611 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.081 0.919 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.053 3.947 25 C -0.144 4.144 26 C 0.292 3.708 27 F -0.196 7.196 28 F -0.206 7.206 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.118 0.882 43 H 0.396 0.604 44 H 0.276 0.724 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.106 0.894 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.678 -12.158 3.219 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.175 4.175 4 C 0.295 3.705 5 O -0.468 6.468 6 N -0.379 5.379 7 C 0.000 4.000 8 C -0.139 4.139 9 H 0.147 0.853 10 C -0.066 4.066 11 N -0.251 5.251 12 C -0.073 4.073 13 C 0.230 3.770 14 O -0.497 6.497 15 N -0.212 5.212 16 C -0.460 4.460 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.075 4.075 25 C -0.182 4.182 26 C 0.255 3.745 27 F -0.177 7.177 28 F -0.188 7.188 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.056 0.944 47 H 0.125 0.875 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.840 -12.050 2.872 25.109 hybrid contribution 1.235 0.428 0.736 1.500 sum -20.605 -11.622 3.607 23.931 Atomic orbital electron populations 1.21762 0.93682 1.02376 1.02730 1.21258 0.96733 0.94777 1.02015 1.21780 0.88848 1.00316 1.06520 1.21434 0.91872 0.82820 0.74416 1.90685 1.71727 1.32893 1.51522 1.46198 1.06864 1.09778 1.75075 1.21209 0.80804 0.94668 1.03298 1.22342 0.98306 0.96549 0.96747 0.85346 1.22085 0.91842 0.88690 1.03998 1.61472 1.13182 1.16089 1.34372 1.21729 0.88428 0.93713 1.03442 1.20693 0.82288 0.91665 0.82353 1.90463 1.52076 1.50010 1.57176 1.41933 1.07721 1.08640 1.62904 1.19652 0.93715 0.85395 1.47200 0.90116 1.25997 0.95172 1.03499 0.96600 1.69667 1.03286 1.33807 1.49442 0.84956 0.77803 0.77406 0.78351 1.19814 1.19816 1.19714 1.22103 0.94767 1.01158 0.89439 1.22504 0.96158 0.93460 1.06102 1.21259 0.74727 0.93215 0.85254 1.92889 1.31127 1.97064 1.96643 1.92977 1.86903 1.80263 1.58610 0.92349 0.91826 0.91592 0.93049 0.92692 0.86386 0.86993 0.74662 0.92022 0.89510 0.93238 0.86954 0.91357 0.86432 0.77060 0.91423 0.89956 0.94447 0.87504 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.55 5.22 30.60 0.16 -1.39 16 3 C -0.14 -1.63 5.70 29.85 0.17 -1.46 16 4 C 0.51 10.06 7.83 87.66 0.69 10.75 16 5 O -0.59 -16.86 15.98 -3.03 -0.05 -16.91 16 6 N -0.72 -12.30 5.01 -463.06 -2.32 -14.62 16 7 C 0.12 2.30 4.99 86.38 0.43 2.74 16 8 C -0.12 -2.16 2.16 -10.74 -0.02 -2.18 16 9 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 10 C 0.06 1.26 4.63 86.33 0.40 1.66 16 11 N -0.53 -14.71 4.39 -900.90 -3.96 -18.67 16 12 C 0.06 1.80 5.45 85.56 0.47 2.27 16 13 C 0.44 19.62 7.46 87.66 0.65 20.27 16 14 O -0.61 -31.22 13.92 -3.08 -0.04 -31.26 16 15 N -0.57 -28.15 5.29 -306.98 -1.62 -29.77 16 16 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 20 Si 0.99 42.03 29.55 68.60 2.03 44.06 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.05 1.53 5.00 86.33 0.43 1.96 16 25 C -0.14 -3.27 5.62 30.64 0.17 -3.10 16 26 C 0.29 6.00 1.65 30.67 0.05 6.05 16 27 F -0.20 -3.72 14.46 44.97 0.65 -3.07 16 28 F -0.21 -5.01 15.54 44.97 0.70 -4.31 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.41 5.48 6.48 -92.71 -0.60 4.88 16 37 H 0.06 1.35 7.61 -2.39 -0.02 1.34 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.01 7.88 -2.38 -0.02 0.99 16 40 H 0.11 1.89 8.01 -2.39 -0.02 1.87 16 41 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16 42 H 0.12 3.11 7.98 -2.39 -0.02 3.09 16 43 H 0.40 18.50 7.90 -92.70 -0.73 17.76 16 44 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.08 3.01 5.80 -2.39 -0.01 2.99 16 46 H 0.04 1.04 7.88 -2.38 -0.02 1.02 16 47 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -69.67 391.92 0.92 -68.76 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.34 Total: 34.81 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.59 Total: 19.41 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -7.62 Total: -111.50 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.09 Total: -48.17 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 1.35 Total: -7.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.67 0.92 -68.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484192475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.281 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds