Wall clock time and date at job start Wed Apr 1 2020 04:55:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46623 * 2 1
4 4 C 1.50706 * 109.46953 * 179.97438 * 3 2 1
5 5 O 1.21279 * 119.99692 * 0.02562 * 4 3 2
6 6 N 1.34777 * 120.00146 * 180.02562 * 4 3 2
7 7 C 1.46496 * 119.99875 * 180.02562 * 6 4 3
8 8 C 1.53002 * 109.47037 * 179.97438 * 7 6 4
9 9 H 1.08999 * 109.50111 * 304.91662 * 8 7 6
10 10 C 1.53036 * 109.50336 * 184.80416 * 8 7 6
11 11 N 1.46846 * 109.52226 * 180.88040 * 10 8 7
12 12 C 1.46904 * 110.99762 * 185.83605 * 11 10 8
13 13 C 1.50708 * 109.47128 * 169.74147 * 12 11 10
14 14 O 1.21296 * 119.99698 * 359.97438 * 13 12 11
15 15 N 1.34774 * 120.00187 * 180.02562 * 13 12 11
16 16 C 1.37092 * 119.99943 * 179.97438 * 15 13 12
17 17 H 1.08000 * 120.00472 * 0.02562 * 16 15 13
18 18 C 1.38949 * 119.99813 * 179.97438 * 16 15 13
19 19 N 1.31412 * 120.00377 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 120.00104 * 180.02562 * 18 16 15
21 21 H 1.48505 * 109.47144 * 89.99963 * 20 18 16
22 22 H 1.48499 * 109.47518 * 210.00040 * 20 18 16
23 23 H 1.48504 * 109.46882 * 330.00356 * 20 18 16
24 24 C 1.46842 * 111.20300 * 61.73630 * 11 10 8
25 25 C 1.53034 * 109.52360 * 298.26008 * 24 11 10
26 26 C 1.53117 * 109.27770 * 59.17932 * 25 24 11
27 27 F 1.39900 * 109.52534 * 182.44067 * 26 25 24
28 28 F 1.39897 * 109.58211 * 62.28108 * 26 25 24
29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3
31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3
32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3
33 33 H 1.09001 * 109.46801 * 240.00208 * 2 1 3
34 34 H 1.09000 * 109.47486 * 299.99829 * 3 2 1
35 35 H 1.09001 * 109.47362 * 60.00551 * 3 2 1
36 36 H 0.96999 * 120.00043 * 359.97438 * 6 4 3
37 37 H 1.09000 * 109.46876 * 299.99570 * 7 6 4
38 38 H 1.08996 * 109.47565 * 59.99371 * 7 6 4
39 39 H 1.09008 * 109.46165 * 300.88845 * 10 8 7
40 40 H 1.09001 * 109.46799 * 60.85684 * 10 8 7
41 41 H 1.09004 * 109.47389 * 289.73995 * 12 11 10
42 42 H 1.09003 * 109.47439 * 49.74227 * 12 11 10
43 43 H 0.97005 * 119.99733 * 359.97438 * 15 13 12
44 44 H 0.96992 * 120.00526 * 179.97438 * 19 18 16
45 45 H 1.08998 * 109.46212 * 178.23907 * 24 11 10
46 46 H 1.09004 * 109.45967 * 58.27262 * 24 11 10
47 47 H 1.08994 * 109.50602 * 299.23614 * 25 24 11
48 48 H 1.08999 * 109.50266 * 179.11767 * 25 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5470 1.4426 0.0006
5 8 4.1534 0.3923 0.0006
6 7 4.2208 2.6098 0.0013
7 6 5.6858 2.6099 0.0013
8 6 6.1958 4.0524 0.0014
9 1 5.7626 4.5915 -0.8410
10 6 7.7214 4.0550 -0.1193
11 7 8.2129 5.4386 -0.0981
12 6 9.6593 5.4872 -0.3506
13 6 10.0829 6.9166 -0.5714
14 8 9.2606 7.8070 -0.5236
15 7 11.3750 7.2054 -0.8230
16 6 11.7602 8.5056 -1.0244
17 1 11.0283 9.2985 -0.9811
18 6 13.0925 8.8033 -1.2832
19 7 13.9833 7.8386 -1.3355
20 14 13.6175 10.5750 -1.5570
21 1 13.9915 11.1870 -0.2566
22 1 14.7849 10.6093 -2.4742
23 1 12.4934 11.3372 -2.1576
24 6 7.8772 6.1021 1.1681
25 6 6.3562 6.1606 1.3273
26 6 5.7910 4.7377 1.3095
27 9 4.3957 4.7877 1.3988
28 9 6.3031 4.0162 2.3932
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.6766 1.9564 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 3.7358 3.4499 0.0009
37 1 6.0491 2.0956 0.8911
38 1 6.0492 2.0964 -0.8888
39 1 8.1528 3.5035 0.7162
40 1 8.0124 3.5804 -1.0565
41 1 10.1921 5.0790 0.5083
42 1 9.8935 4.8978 -1.2371
43 1 12.0325 6.4932 -0.8615
44 1 14.9132 8.0463 -1.5165
45 1 8.2814 7.1143 1.1661
46 1 8.3078 5.5409 1.9975
47 1 5.9261 6.7333 0.5057
48 1 6.1076 6.6391 2.2745
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484192475.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:20
Heat of formation + Delta-G solvation = -205.038922 kcal
Electronic energy + Delta-G solvation = -31299.066671 eV
Core-core repulsion = 26637.099207 eV
Total energy + Delta-G solvation = -4661.967465 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.13129 -48.09053 -40.87007 -40.51968 -39.03103 -36.51543 -35.83586 -35.24506
-33.72814 -33.18238 -32.67050 -29.35312 -28.70518 -26.64503 -26.41289 -24.32452
-23.51718 -22.61132 -21.55605 -20.96983 -20.91096 -19.84691 -18.53468 -18.21111
-18.04003 -17.70245 -17.37275 -17.06295 -16.77863 -16.63013 -16.23705 -16.15929
-15.46212 -15.39645 -15.37043 -15.17499 -15.03236 -14.63753 -14.39040 -14.26672
-14.07619 -13.96371 -13.71155 -13.50715 -13.41195 -13.24193 -13.16244 -12.94319
-12.82069 -12.63398 -12.50505 -12.39746 -12.35226 -12.18593 -12.11037 -12.01979
-11.62474 -11.49361 -11.30126 -10.91771 -10.26712 -10.15116 -9.97422 -9.32023
-8.44374 -5.92501 1.39228 1.43530 1.55541 1.63705 2.07315 2.08159
2.30324 2.56460 2.68679 2.98087 3.13753 3.23137 3.30189 3.42837
3.77861 3.79507 3.93583 4.04673 4.09402 4.12612 4.15212 4.26689
4.32285 4.43987 4.51445 4.53314 4.56653 4.58327 4.66824 4.70683
4.73724 4.77123 4.88000 4.93052 4.98173 5.03308 5.23030 5.28399
5.36021 5.43564 5.47737 5.78906 6.00520 6.09656 6.50242 6.62861
7.15637 7.22545 7.59742 8.14730 8.72868
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.029113 B = 0.001908 C = 0.001864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 961.524035 B =14668.837503 C =15021.362585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.110 4.110
3 C -0.135 4.135
4 C 0.506 3.494
5 O -0.588 6.588
6 N -0.724 5.724
7 C 0.125 3.875
8 C -0.120 4.120
9 H 0.129 0.871
10 C 0.062 3.938
11 N -0.527 5.527
12 C 0.058 3.942
13 C 0.443 3.557
14 O -0.611 6.611
15 N -0.575 5.575
16 C -0.330 4.330
17 H 0.081 0.919
18 C -0.013 4.013
19 N -0.921 5.921
20 Si 0.991 3.009
21 H -0.273 1.273
22 H -0.273 1.273
23 H -0.272 1.272
24 C 0.053 3.947
25 C -0.144 4.144
26 C 0.292 3.708
27 F -0.196 7.196
28 F -0.206 7.206
29 H 0.057 0.943
30 H 0.063 0.937
31 H 0.065 0.935
32 H 0.051 0.949
33 H 0.054 0.946
34 H 0.118 0.882
35 H 0.112 0.888
36 H 0.414 0.586
37 H 0.061 0.939
38 H 0.087 0.913
39 H 0.049 0.951
40 H 0.112 0.888
41 H 0.069 0.931
42 H 0.118 0.882
43 H 0.396 0.604
44 H 0.276 0.724
45 H 0.082 0.918
46 H 0.037 0.963
47 H 0.106 0.894
48 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.678 -12.158 3.219 25.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.148 4.148
3 C -0.175 4.175
4 C 0.295 3.705
5 O -0.468 6.468
6 N -0.379 5.379
7 C 0.000 4.000
8 C -0.139 4.139
9 H 0.147 0.853
10 C -0.066 4.066
11 N -0.251 5.251
12 C -0.073 4.073
13 C 0.230 3.770
14 O -0.497 6.497
15 N -0.212 5.212
16 C -0.460 4.460
17 H 0.099 0.901
18 C -0.213 4.213
19 N -0.562 5.562
20 Si 0.815 3.185
21 H -0.198 1.198
22 H -0.198 1.198
23 H -0.197 1.197
24 C -0.075 4.075
25 C -0.182 4.182
26 C 0.255 3.745
27 F -0.177 7.177
28 F -0.188 7.188
29 H 0.077 0.923
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.070 0.930
33 H 0.073 0.927
34 H 0.136 0.864
35 H 0.130 0.870
36 H 0.253 0.747
37 H 0.080 0.920
38 H 0.105 0.895
39 H 0.068 0.932
40 H 0.130 0.870
41 H 0.086 0.914
42 H 0.136 0.864
43 H 0.229 0.771
44 H 0.086 0.914
45 H 0.100 0.900
46 H 0.056 0.944
47 H 0.125 0.875
48 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -21.840 -12.050 2.872 25.109
hybrid contribution 1.235 0.428 0.736 1.500
sum -20.605 -11.622 3.607 23.931
Atomic orbital electron populations
1.21762 0.93682 1.02376 1.02730 1.21258 0.96733 0.94777 1.02015
1.21780 0.88848 1.00316 1.06520 1.21434 0.91872 0.82820 0.74416
1.90685 1.71727 1.32893 1.51522 1.46198 1.06864 1.09778 1.75075
1.21209 0.80804 0.94668 1.03298 1.22342 0.98306 0.96549 0.96747
0.85346 1.22085 0.91842 0.88690 1.03998 1.61472 1.13182 1.16089
1.34372 1.21729 0.88428 0.93713 1.03442 1.20693 0.82288 0.91665
0.82353 1.90463 1.52076 1.50010 1.57176 1.41933 1.07721 1.08640
1.62904 1.19652 0.93715 0.85395 1.47200 0.90116 1.25997 0.95172
1.03499 0.96600 1.69667 1.03286 1.33807 1.49442 0.84956 0.77803
0.77406 0.78351 1.19814 1.19816 1.19714 1.22103 0.94767 1.01158
0.89439 1.22504 0.96158 0.93460 1.06102 1.21259 0.74727 0.93215
0.85254 1.92889 1.31127 1.97064 1.96643 1.92977 1.86903 1.80263
1.58610 0.92349 0.91826 0.91592 0.93049 0.92692 0.86386 0.86993
0.74662 0.92022 0.89510 0.93238 0.86954 0.91357 0.86432 0.77060
0.91423 0.89956 0.94447 0.87504 0.88206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16
2 C -0.11 -1.55 5.22 30.60 0.16 -1.39 16
3 C -0.14 -1.63 5.70 29.85 0.17 -1.46 16
4 C 0.51 10.06 7.83 87.66 0.69 10.75 16
5 O -0.59 -16.86 15.98 -3.03 -0.05 -16.91 16
6 N -0.72 -12.30 5.01 -463.06 -2.32 -14.62 16
7 C 0.12 2.30 4.99 86.38 0.43 2.74 16
8 C -0.12 -2.16 2.16 -10.74 -0.02 -2.18 16
9 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16
10 C 0.06 1.26 4.63 86.33 0.40 1.66 16
11 N -0.53 -14.71 4.39 -900.90 -3.96 -18.67 16
12 C 0.06 1.80 5.45 85.56 0.47 2.27 16
13 C 0.44 19.62 7.46 87.66 0.65 20.27 16
14 O -0.61 -31.22 13.92 -3.08 -0.04 -31.26 16
15 N -0.57 -28.15 5.29 -306.98 -1.62 -29.77 16
16 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16
17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16
18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16
19 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16
20 Si 0.99 42.03 29.55 68.60 2.03 44.06 16
21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
24 C 0.05 1.53 5.00 86.33 0.43 1.96 16
25 C -0.14 -3.27 5.62 30.64 0.17 -3.10 16
26 C 0.29 6.00 1.65 30.67 0.05 6.05 16
27 F -0.20 -3.72 14.46 44.97 0.65 -3.07 16
28 F -0.21 -5.01 15.54 44.97 0.70 -4.31 16
29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16
31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16
33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16
34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.41 5.48 6.48 -92.71 -0.60 4.88 16
37 H 0.06 1.35 7.61 -2.39 -0.02 1.34 16
38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
39 H 0.05 1.01 7.88 -2.38 -0.02 0.99 16
40 H 0.11 1.89 8.01 -2.39 -0.02 1.87 16
41 H 0.07 1.94 8.12 -2.38 -0.02 1.92 16
42 H 0.12 3.11 7.98 -2.39 -0.02 3.09 16
43 H 0.40 18.50 7.90 -92.70 -0.73 17.76 16
44 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16
45 H 0.08 3.01 5.80 -2.39 -0.01 2.99 16
46 H 0.04 1.04 7.88 -2.38 -0.02 1.02 16
47 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16
48 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16
Total: -1.00 -69.67 391.92 0.92 -68.76
By element:
Atomic # 1 Polarization: 35.16 SS G_CDS: -0.34 Total: 34.81 kcal
Atomic # 6 Polarization: 13.82 SS G_CDS: 5.59 Total: 19.41 kcal
Atomic # 7 Polarization: -103.88 SS G_CDS: -7.62 Total: -111.50 kcal
Atomic # 8 Polarization: -48.08 SS G_CDS: -0.09 Total: -48.17 kcal
Atomic # 9 Polarization: -8.72 SS G_CDS: 1.35 Total: -7.38 kcal
Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal
Total: -69.67 0.92 -68.76 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484192475.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -136.281 kcal
(2) G-P(sol) polarization free energy of solvation -69.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.956 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) -205.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds