Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38545 * 120.01665 * 2 1 4 4 C 1.40068 * 117.82260 * 179.97438 * 3 2 1 5 5 C 1.48143 * 121.15039 * 180.02562 * 4 3 2 6 6 O 1.21511 * 119.99786 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99794 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09006 * 112.85174 * 314.66891 * 9 8 7 11 11 C 1.53785 * 113.61469 * 85.85810 * 9 8 7 12 12 C 1.54051 * 86.98022 * 89.16505 * 11 9 8 13 13 H 1.09007 * 113.69067 * 270.87249 * 12 11 9 14 14 N 1.46909 * 113.62091 * 139.98060 * 12 11 9 15 15 C 1.46901 * 111.00108 * 107.50171 * 14 12 11 16 16 C 1.50700 * 109.46799 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00358 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99641 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99910 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99908 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99759 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47002 * 89.99932 * 23 21 19 25 25 H 1.48502 * 109.47536 * 209.99573 * 23 21 19 26 26 H 1.48504 * 109.47348 * 330.00082 * 23 21 19 27 27 C 1.53781 * 113.61747 * 183.47137 * 9 8 7 28 28 C 1.39768 * 117.70528 * 0.26555 * 4 3 2 29 29 N 1.31898 * 119.65459 * 359.44884 * 28 4 3 30 30 N 1.28279 * 122.32506 * 0.58285 * 29 28 4 31 31 H 1.09007 * 109.46761 * 90.00342 * 1 2 3 32 32 H 1.08997 * 109.46978 * 210.00261 * 1 2 3 33 33 H 1.08995 * 109.47218 * 330.01047 * 1 2 3 34 34 H 1.08008 * 121.08833 * 359.97438 * 3 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 37 37 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 38 38 H 1.09003 * 113.61524 * 203.66324 * 11 9 8 39 39 H 1.08993 * 113.61806 * 334.57258 * 11 9 8 40 40 H 1.00904 * 110.99377 * 343.54881 * 14 12 11 41 41 H 1.09005 * 109.46975 * 300.00477 * 15 14 12 42 42 H 1.09000 * 109.46765 * 60.00095 * 15 14 12 43 43 H 0.97006 * 119.99712 * 359.97438 * 18 16 15 44 44 H 0.96998 * 119.99909 * 180.02562 * 22 21 19 45 45 H 1.08996 * 113.61287 * 25.42620 * 27 9 8 46 46 H 1.08997 * 113.61456 * 156.25551 * 27 9 8 47 47 H 1.08005 * 120.17445 * 179.70384 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4140 2.3836 0.0012 6 8 3.8689 3.4695 0.0007 7 7 5.7594 2.3049 0.0012 8 6 6.5647 3.5288 0.0012 9 6 8.0501 3.1620 0.0018 10 1 8.2915 2.3751 0.7165 11 6 8.6243 2.9152 -1.4033 12 6 8.9417 4.4220 -1.4494 13 1 8.1281 5.0290 -1.8466 14 7 10.2384 4.7317 -2.0666 15 6 10.0590 5.3309 -3.3958 16 6 11.4076 5.6336 -3.9964 17 8 12.4186 5.3761 -3.3779 18 7 11.4902 6.1915 -5.2206 19 6 12.7170 6.4674 -5.7667 20 1 13.6173 6.2373 -5.2163 21 6 12.8021 7.0420 -7.0290 22 7 13.9781 7.3060 -7.5527 23 14 11.2451 7.4393 -7.9813 24 1 10.8040 8.8193 -7.6552 25 1 11.5161 7.3375 -9.4379 26 1 10.1774 6.4771 -7.6080 27 6 8.9853 4.3797 0.0872 28 6 4.2017 -0.1154 -0.0047 29 7 3.4483 -1.1980 0.0012 30 7 2.1668 -1.1419 0.0006 31 1 -0.3633 -0.0001 -1.0278 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5136 34 1 1.6782 2.1452 -0.0004 35 1 6.1947 1.4381 0.0011 36 1 6.3352 4.1147 -0.8888 37 1 6.3352 4.1148 0.8912 38 1 9.5114 2.2818 -1.4074 39 1 7.8764 2.6026 -2.1319 40 1 10.8208 3.9092 -2.1162 41 1 9.5232 4.6332 -4.0395 42 1 9.4863 6.2537 -3.3041 43 1 10.6816 6.3978 -5.7151 44 1 14.0376 7.7075 -8.4337 45 1 8.5286 5.2486 0.5610 46 1 9.9704 4.1462 0.4911 47 1 5.2782 -0.2032 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488823565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = 12.915553 kcal Electronic energy + Delta-G solvation = -28418.506521 eV Core-core repulsion = 24216.679458 eV Total energy + Delta-G solvation = -4201.827063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87875 -40.37627 -39.40540 -38.27790 -35.49450 -34.60833 -34.20379 -33.86123 -33.21552 -31.66549 -28.95883 -28.60603 -26.73536 -25.92674 -25.21460 -24.40566 -23.85394 -22.57829 -21.25766 -19.74724 -19.29289 -18.57658 -18.30202 -18.04228 -16.93705 -16.68672 -16.24239 -16.08553 -15.77254 -15.51756 -15.37622 -14.84299 -14.82867 -14.59745 -14.18959 -14.01203 -13.83086 -13.67647 -13.51555 -13.14083 -13.04001 -12.86366 -12.72789 -12.48040 -12.22875 -11.94712 -11.77566 -11.63917 -11.35562 -11.17546 -11.02898 -10.86841 -10.69717 -10.61731 -10.53585 -10.41244 -10.21046 -9.99005 -9.68298 -9.59123 -8.60373 -8.20805 -8.12752 -6.32763 -3.84233 -0.31641 0.18886 2.13099 2.33182 2.97125 3.00773 3.05602 3.13745 3.29234 3.61595 3.71922 3.78033 3.89869 4.04582 4.09083 4.15193 4.19153 4.25507 4.40512 4.45762 4.67161 4.69799 4.88687 4.90992 4.95097 5.02229 5.11817 5.17021 5.21357 5.24659 5.31825 5.40757 5.52169 5.55352 5.59506 5.61227 5.67715 5.77596 5.85694 5.88262 5.96988 6.07988 6.75569 7.11130 7.44702 7.54227 7.57025 8.01106 8.12793 8.57982 8.93246 9.40727 9.80787 10.80356 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.001581 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.771404 B =17705.941967 C =18563.764508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.069 3.931 3 C -0.057 4.057 4 C -0.129 4.129 5 C 0.562 3.438 6 O -0.522 6.522 7 N -0.716 5.716 8 C 0.136 3.864 9 C -0.129 4.129 10 H 0.086 0.914 11 C -0.167 4.167 12 C 0.066 3.934 13 H 0.096 0.904 14 N -0.657 5.657 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.114 4.114 28 C 0.062 3.938 29 N -0.235 5.235 30 N -0.228 5.228 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.353 0.647 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.062 -13.606 16.537 34.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.143 4.143 5 C 0.346 3.654 6 O -0.398 6.398 7 N -0.368 5.368 8 C 0.013 3.987 9 C -0.148 4.148 10 H 0.104 0.896 11 C -0.206 4.206 12 C -0.045 4.045 13 H 0.114 0.886 14 N -0.288 5.288 15 C -0.086 4.086 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.153 4.153 28 C -0.104 4.104 29 N -0.075 5.075 30 N -0.072 5.072 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.182 0.818 35 H 0.238 0.762 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.174 0.826 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.565 -13.927 17.072 34.513 hybrid contribution -0.964 0.777 -1.543 1.978 sum -27.529 -13.150 15.529 34.234 Atomic orbital electron populations 1.20754 0.86614 1.04590 1.04182 1.23021 0.99617 0.89767 0.95123 1.22540 0.93120 1.00841 0.92237 1.21250 0.95369 0.95174 1.02483 1.17881 0.82302 0.87963 0.77241 1.90828 1.71781 1.28393 1.48786 1.45887 1.05486 1.10860 1.74532 1.21320 0.88423 0.85716 1.03193 1.22455 0.92992 1.00589 0.98772 0.89559 1.23864 1.01548 0.98939 0.96275 1.23173 0.91964 0.93876 0.95469 0.88641 1.60012 1.12708 1.34970 1.21096 1.21755 0.96807 0.99948 0.90069 1.19733 0.90230 0.83930 0.82645 1.90561 1.36936 1.56101 1.61134 1.42217 1.08288 1.56550 1.15934 1.19437 0.85256 1.38132 1.00638 0.86275 1.25037 0.97009 0.97399 0.96680 1.69621 1.22697 1.42337 1.17426 0.86671 0.82865 0.79246 0.80582 1.19571 1.20178 1.19569 1.23049 0.99385 0.96403 0.96472 1.24528 1.02545 0.88805 0.94484 1.73087 0.99233 1.26716 1.08461 1.72873 1.01843 1.24999 1.07487 0.89328 0.89463 0.89761 0.81825 0.76223 0.90551 0.90452 0.89253 0.91442 0.82627 0.93777 0.89497 0.79696 0.91603 0.90948 0.88734 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.19 36.01 0.37 0.03 16 2 C 0.07 0.45 6.86 -82.46 -0.57 -0.11 16 3 C -0.06 -0.37 9.43 -38.78 -0.37 -0.74 16 4 C -0.13 -0.89 5.92 -104.57 -0.62 -1.51 16 5 C 0.56 4.52 7.80 -12.20 -0.10 4.43 16 6 O -0.52 -6.00 16.49 5.36 0.09 -5.91 16 7 N -0.72 -4.18 5.52 -61.15 -0.34 -4.51 16 8 C 0.14 0.91 5.35 -4.04 -0.02 0.89 16 9 C -0.13 -0.80 3.93 -89.81 -0.35 -1.16 16 10 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 11 C -0.17 -1.29 7.26 -25.77 -0.19 -1.48 16 12 C 0.07 0.67 3.84 -66.75 -0.26 0.41 16 13 H 0.10 0.93 7.42 -51.93 -0.39 0.54 16 14 N -0.66 -9.45 6.24 -106.97 -0.67 -10.12 16 15 C 0.05 0.75 6.01 -4.98 -0.03 0.72 16 16 C 0.45 10.05 7.82 -10.98 -0.09 9.97 16 17 O -0.57 -15.03 15.78 5.55 0.09 -14.94 16 18 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 19 C -0.31 -8.64 10.16 -14.94 -0.15 -8.79 16 20 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 23 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C -0.11 -0.96 7.47 -25.92 -0.19 -1.16 16 28 C 0.06 0.39 10.84 -16.95 -0.18 0.21 16 29 N -0.24 -2.13 11.49 30.78 0.35 -1.77 16 30 N -0.23 -2.07 11.40 33.58 0.38 -1.69 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.13 8.09 -51.93 -0.42 -0.29 16 34 H 0.16 0.84 7.80 -52.48 -0.41 0.43 16 35 H 0.40 1.33 6.63 -40.82 -0.27 1.06 16 36 H 0.08 0.60 7.38 -51.93 -0.38 0.22 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.71 7.83 -51.93 -0.41 0.31 16 39 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.35 5.26 7.90 -39.29 -0.31 4.95 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.17 0.51 6.54 -52.48 -0.34 0.16 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -36.41 397.05 -7.46 -43.87 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.52 Total: 10.68 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.84 Total: 2.76 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.45 Total: -57.02 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.41 -7.46 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488823565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.783 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds