Wall clock time and date at job start Wed Apr 1 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38545 * 120.01665 * 2 1 4 4 C 1.40068 * 117.82260 * 179.97438 * 3 2 1 5 5 C 1.48143 * 121.15039 * 180.02562 * 4 3 2 6 6 O 1.21511 * 119.99786 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99794 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09006 * 112.85174 * 314.66891 * 9 8 7 11 11 C 1.53785 * 113.61469 * 85.85810 * 9 8 7 12 12 C 1.54051 * 86.98022 * 89.16505 * 11 9 8 13 13 H 1.09007 * 113.69067 * 270.87249 * 12 11 9 14 14 N 1.46909 * 113.62091 * 139.98060 * 12 11 9 15 15 C 1.46901 * 111.00108 * 107.50171 * 14 12 11 16 16 C 1.50700 * 109.46799 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00358 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99641 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99910 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99908 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99759 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47002 * 89.99932 * 23 21 19 25 25 H 1.48502 * 109.47536 * 209.99573 * 23 21 19 26 26 H 1.48504 * 109.47348 * 330.00082 * 23 21 19 27 27 C 1.53781 * 113.61747 * 183.47137 * 9 8 7 28 28 C 1.39768 * 117.70528 * 0.26555 * 4 3 2 29 29 N 1.31898 * 119.65459 * 359.44884 * 28 4 3 30 30 N 1.28279 * 122.32506 * 0.58285 * 29 28 4 31 31 H 1.09007 * 109.46761 * 90.00342 * 1 2 3 32 32 H 1.08997 * 109.46978 * 210.00261 * 1 2 3 33 33 H 1.08995 * 109.47218 * 330.01047 * 1 2 3 34 34 H 1.08008 * 121.08833 * 359.97438 * 3 2 1 35 35 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 37 37 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 38 38 H 1.09003 * 113.61524 * 203.66324 * 11 9 8 39 39 H 1.08993 * 113.61806 * 334.57258 * 11 9 8 40 40 H 1.00904 * 110.99377 * 343.54881 * 14 12 11 41 41 H 1.09005 * 109.46975 * 300.00477 * 15 14 12 42 42 H 1.09000 * 109.46765 * 60.00095 * 15 14 12 43 43 H 0.97006 * 119.99712 * 359.97438 * 18 16 15 44 44 H 0.96998 * 119.99909 * 180.02562 * 22 21 19 45 45 H 1.08996 * 113.61287 * 25.42620 * 27 9 8 46 46 H 1.08997 * 113.61456 * 156.25551 * 27 9 8 47 47 H 1.08005 * 120.17445 * 179.70384 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4140 2.3836 0.0012 6 8 3.8689 3.4695 0.0007 7 7 5.7594 2.3049 0.0012 8 6 6.5647 3.5288 0.0012 9 6 8.0501 3.1620 0.0018 10 1 8.2915 2.3751 0.7165 11 6 8.6243 2.9152 -1.4033 12 6 8.9417 4.4220 -1.4494 13 1 8.1281 5.0290 -1.8466 14 7 10.2384 4.7317 -2.0666 15 6 10.0590 5.3309 -3.3958 16 6 11.4076 5.6336 -3.9964 17 8 12.4186 5.3761 -3.3779 18 7 11.4902 6.1915 -5.2206 19 6 12.7170 6.4674 -5.7667 20 1 13.6173 6.2373 -5.2163 21 6 12.8021 7.0420 -7.0290 22 7 13.9781 7.3060 -7.5527 23 14 11.2451 7.4393 -7.9813 24 1 10.8040 8.8193 -7.6552 25 1 11.5161 7.3375 -9.4379 26 1 10.1774 6.4771 -7.6080 27 6 8.9853 4.3797 0.0872 28 6 4.2017 -0.1154 -0.0047 29 7 3.4483 -1.1980 0.0012 30 7 2.1668 -1.1419 0.0006 31 1 -0.3633 -0.0001 -1.0278 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5136 34 1 1.6782 2.1452 -0.0004 35 1 6.1947 1.4381 0.0011 36 1 6.3352 4.1147 -0.8888 37 1 6.3352 4.1148 0.8912 38 1 9.5114 2.2818 -1.4074 39 1 7.8764 2.6026 -2.1319 40 1 10.8208 3.9092 -2.1162 41 1 9.5232 4.6332 -4.0395 42 1 9.4863 6.2537 -3.3041 43 1 10.6816 6.3978 -5.7151 44 1 14.0376 7.7075 -8.4337 45 1 8.5286 5.2486 0.5610 46 1 9.9704 4.1462 0.4911 47 1 5.2782 -0.2032 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488823565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:49 Heat of formation + Delta-G solvation = -17.227954 kcal Electronic energy + Delta-G solvation = -28419.813642 eV Core-core repulsion = 24216.679458 eV Total energy + Delta-G solvation = -4203.134184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39682 -41.03135 -40.37546 -39.78923 -36.33117 -35.93412 -35.08242 -34.70755 -34.08109 -33.71548 -29.49283 -29.31135 -28.00862 -26.56183 -26.09473 -25.34210 -24.77801 -23.37902 -21.82853 -21.33500 -20.50107 -19.96975 -19.07669 -18.59512 -17.84140 -17.37997 -17.07186 -17.01843 -16.80669 -16.50812 -16.35957 -16.06374 -15.76408 -15.54277 -15.21460 -14.77393 -14.66436 -14.57554 -14.41669 -14.27797 -14.09034 -13.84253 -13.66051 -13.26301 -13.24235 -13.10670 -12.89011 -12.67999 -12.42031 -12.17679 -12.04852 -11.97911 -11.66296 -11.52523 -11.41622 -11.35389 -11.19890 -10.87132 -10.76299 -10.41960 -10.25480 -10.23419 -9.20567 -8.42066 -6.02978 -0.84208 -0.26428 1.29334 1.35047 1.43694 1.55424 1.79868 1.95047 2.22218 2.45960 2.76376 2.87227 3.14348 3.15012 3.32891 3.42075 3.44888 3.56636 3.69159 3.70558 3.82338 4.02914 4.10302 4.17158 4.28783 4.33540 4.44863 4.48131 4.60421 4.61414 4.69632 4.72649 4.81068 4.83505 4.93106 4.97364 5.02999 5.11535 5.22301 5.24296 5.29061 5.40956 5.53205 5.92293 6.15598 6.27606 6.44526 6.59432 6.87425 6.92054 7.39184 7.50143 7.95747 8.75588 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.001581 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.771404 B =17705.941967 C =18563.764508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.069 3.931 3 C -0.058 4.058 4 C -0.135 4.135 5 C 0.565 3.435 6 O -0.560 6.560 7 N -0.701 5.701 8 C 0.139 3.861 9 C -0.106 4.106 10 H 0.106 0.894 11 C -0.158 4.158 12 C 0.056 3.944 13 H 0.104 0.896 14 N -0.676 5.676 15 C 0.062 3.938 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.055 0.945 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.231 1.231 27 C -0.116 4.116 28 C 0.069 3.931 29 N -0.267 5.267 30 N -0.260 5.260 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.416 0.584 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.346 0.654 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.695 -13.968 16.518 37.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C -0.088 4.088 4 C -0.149 4.149 5 C 0.350 3.650 6 O -0.439 6.439 7 N -0.353 5.353 8 C 0.016 3.984 9 C -0.125 4.125 10 H 0.124 0.876 11 C -0.197 4.197 12 C -0.054 4.054 13 H 0.122 0.878 14 N -0.308 5.308 15 C -0.070 4.070 16 C 0.235 3.765 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.460 4.460 20 H 0.073 0.927 21 C -0.213 4.213 22 N -0.574 5.574 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.155 4.155 28 C -0.097 4.097 29 N -0.106 5.106 30 N -0.102 5.102 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.193 0.807 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.166 0.834 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -30.210 -14.344 17.081 37.552 hybrid contribution 0.275 0.891 -1.423 1.701 sum -29.935 -13.453 15.658 36.363 Atomic orbital electron populations 1.20886 0.84471 1.05589 1.05128 1.23453 1.00997 0.89101 0.94094 1.22781 0.93273 1.01325 0.91445 1.21242 0.95597 0.94954 1.03073 1.17976 0.82779 0.87617 0.76601 1.90812 1.72557 1.29703 1.50864 1.45768 1.04826 1.11466 1.73280 1.21251 0.88539 0.85870 1.02776 1.22267 0.92088 0.99870 0.98316 0.87571 1.23777 1.01736 0.96949 0.97283 1.23402 0.90130 0.95839 0.96025 0.87787 1.60042 1.15195 1.35194 1.20335 1.21671 0.92335 1.01977 0.91063 1.21063 0.92373 0.81402 0.81643 1.90538 1.39718 1.57427 1.62254 1.42053 1.07272 1.57274 1.16714 1.19021 0.85412 1.40169 1.01360 0.92665 1.26108 1.01746 0.96182 0.97254 1.69804 1.26148 1.43254 1.18244 0.85368 0.77889 0.80240 0.78033 1.18208 1.20004 1.15471 1.23031 0.99570 0.97667 0.95242 1.24925 1.03785 0.87891 0.93134 1.73005 0.99623 1.28052 1.09878 1.72790 1.02247 1.26434 1.08772 0.88264 0.89447 0.87768 0.80680 0.74550 0.91343 0.90673 0.89400 0.90630 0.83386 0.90709 0.87118 0.77501 0.91142 0.90649 0.89693 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 71.24 0.73 0.22 16 2 C 0.07 0.83 6.86 42.62 0.29 1.12 16 3 C -0.06 -0.67 9.43 22.79 0.21 -0.45 16 4 C -0.13 -1.63 5.92 -19.83 -0.12 -1.75 16 5 C 0.56 7.94 7.80 86.88 0.68 8.62 16 6 O -0.56 -12.06 16.49 -3.75 -0.06 -12.12 16 7 N -0.70 -6.16 5.52 -465.69 -2.57 -8.73 16 8 C 0.14 1.46 5.35 86.38 0.46 1.92 16 9 C -0.11 -0.99 3.93 -10.27 -0.04 -1.03 16 10 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 11 C -0.16 -1.96 7.26 31.21 0.23 -1.74 16 12 C 0.06 0.98 3.84 45.53 0.17 1.16 16 13 H 0.10 1.67 7.42 -2.38 -0.02 1.66 16 14 N -0.68 -18.40 6.24 -492.34 -3.07 -21.47 16 15 C 0.06 1.82 6.01 85.56 0.51 2.33 16 16 C 0.45 19.97 7.82 87.66 0.69 20.65 16 17 O -0.61 -33.88 15.78 -3.04 -0.05 -33.93 16 18 N -0.59 -27.76 5.09 -306.99 -1.56 -29.32 16 19 C -0.33 -19.37 10.16 84.04 0.85 -18.52 16 20 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 23 Si 0.96 38.64 27.74 68.60 1.90 40.54 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 27 C -0.12 -1.71 7.47 31.12 0.23 -1.48 16 28 C 0.07 0.75 10.84 85.05 0.92 1.67 16 29 N -0.27 -4.57 11.49 -56.52 -0.65 -5.22 16 30 N -0.26 -4.55 11.40 -47.69 -0.54 -5.10 16 31 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.08 8.09 -2.39 -0.02 0.06 16 34 H 0.18 1.52 7.80 -2.91 -0.02 1.50 16 35 H 0.42 1.26 6.63 -92.71 -0.61 0.65 16 36 H 0.07 0.88 7.38 -2.39 -0.02 0.86 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.17 7.83 -2.39 -0.02 1.16 16 39 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 40 H 0.35 10.06 7.90 -89.69 -0.71 9.36 16 41 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.11 2.79 8.13 -2.39 -0.02 2.77 16 43 H 0.39 15.08 5.76 -92.70 -0.53 14.55 16 44 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.21 0.59 6.54 -2.91 -0.02 0.57 16 Total: -1.00 -85.66 397.05 -0.89 -86.54 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.88 Total: 32.38 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.29 Total: 12.41 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -8.10 Total: -125.82 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.11 Total: -46.05 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -85.66 -0.89 -86.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488823565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.315 kcal (2) G-P(sol) polarization free energy of solvation -85.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds