Wall clock time and date at job start Wed Apr 1 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 N 1.46493 * 109.47417 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00475 * 272.86553 * 4 3 2 6 6 O 1.21274 * 120.00649 * 175.89635 * 5 4 3 7 7 C 1.50702 * 119.99454 * 355.89175 * 5 4 3 8 8 F 1.39899 * 109.47038 * 27.31136 * 7 5 4 9 9 F 1.39905 * 109.47053 * 147.30731 * 7 5 4 10 10 C 1.46506 * 120.00290 * 92.86068 * 4 3 2 11 11 C 1.53122 * 109.52088 * 243.06189 * 10 4 3 12 12 C 1.53045 * 109.27490 * 182.37209 * 11 10 4 13 13 N 1.46857 * 109.51998 * 59.18075 * 12 11 10 14 14 C 1.46898 * 110.99893 * 174.16051 * 13 12 11 15 15 C 1.50698 * 109.46941 * 293.31119 * 14 13 12 16 16 O 1.21294 * 120.00349 * 354.01454 * 15 14 13 17 17 N 1.34780 * 119.99805 * 174.01465 * 15 14 13 18 18 C 1.37103 * 119.99780 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99966 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00109 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00284 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99799 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47236 * 90.00115 * 22 20 18 24 24 H 1.48505 * 109.47167 * 210.00111 * 22 20 18 25 25 H 1.48503 * 109.47034 * 330.00114 * 22 20 18 26 26 C 1.46850 * 111.19486 * 298.25478 * 13 12 11 27 27 C 1.53037 * 109.52348 * 61.74416 * 26 13 12 28 28 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47295 * 300.00065 * 1 2 3 30 30 H 1.09003 * 109.47294 * 60.00220 * 1 2 3 31 31 H 1.08990 * 109.47636 * 240.00007 * 2 1 3 32 32 H 1.09001 * 109.47150 * 119.99267 * 2 1 3 33 33 H 1.09003 * 109.47090 * 59.99810 * 3 2 1 34 34 H 1.08994 * 109.47088 * 300.00019 * 3 2 1 35 35 H 1.09000 * 109.47800 * 267.30646 * 7 5 4 36 36 H 1.09001 * 109.51666 * 3.18472 * 10 4 3 37 37 H 1.08994 * 109.50573 * 62.43889 * 11 10 4 38 38 H 1.09000 * 109.50198 * 302.30904 * 11 10 4 39 39 H 1.08996 * 109.46408 * 299.16364 * 12 11 10 40 40 H 1.09000 * 109.45094 * 179.18428 * 12 11 10 41 41 H 1.08988 * 109.47291 * 173.31101 * 14 13 12 42 42 H 1.09004 * 109.47244 * 53.30562 * 14 13 12 43 43 H 0.96994 * 120.00140 * 359.97438 * 17 15 14 44 44 H 0.96998 * 120.00093 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.46110 * 181.76058 * 26 13 12 46 46 H 1.08996 * 109.46325 * 301.72582 * 26 13 12 47 47 H 1.08996 * 109.50246 * 180.87184 * 27 26 13 48 48 H 1.09006 * 109.50042 * 60.76180 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1784 1.3845 1.1666 6 8 5.3888 1.3094 1.1647 7 6 3.4272 1.4128 2.4728 8 9 2.1438 0.8888 2.2841 9 9 4.1105 0.6432 3.4205 10 6 4.2380 1.5058 -1.2662 11 6 5.0602 0.2266 -1.4459 12 6 5.8692 0.3238 -2.7414 13 7 6.7562 1.4926 -2.6795 14 6 7.6473 1.5396 -3.8464 15 6 8.6046 0.3769 -3.7945 16 8 8.6235 -0.3503 -2.8239 17 7 9.4399 0.1452 -4.8265 18 6 10.3113 -0.9123 -4.7790 19 1 10.3286 -1.5593 -3.9145 20 6 11.1728 -1.1509 -5.8427 21 7 12.0076 -2.1648 -5.7975 22 14 11.1433 -0.0313 -7.3378 23 1 12.0995 1.0871 -7.1376 24 1 11.5327 -0.8056 -8.5438 25 1 9.7744 0.5144 -7.5206 26 6 5.9866 2.7371 -2.5546 27 6 5.1811 2.7118 -1.2536 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.3514 2.4412 2.8262 36 1 3.5321 1.6040 -2.0910 37 1 4.3907 -0.6319 -1.4986 38 1 5.7388 0.1085 -0.6011 39 1 5.1895 0.4281 -3.5871 40 1 6.4667 -0.5794 -2.8649 41 1 8.2090 2.4735 -3.8372 42 1 7.0542 1.4813 -4.7591 43 1 9.4246 0.7265 -5.6028 44 1 12.6088 -2.3315 -6.5402 45 1 6.6694 3.5866 -2.5426 46 1 5.3064 2.8300 -3.4012 47 1 4.5982 3.6289 -1.1687 48 1 5.8617 2.6328 -0.4057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490608634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:41 Heat of formation + Delta-G solvation = -168.271264 kcal Electronic energy + Delta-G solvation = -32115.189421 eV Core-core repulsion = 27454.816322 eV Total energy + Delta-G solvation = -4660.373099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.34289 -48.36657 -41.56705 -40.47614 -38.91041 -37.34497 -35.98600 -34.60773 -33.75391 -32.87472 -31.81832 -29.62459 -28.52169 -26.99335 -26.01031 -24.26726 -24.17072 -22.82044 -21.45235 -21.24187 -20.70893 -20.20237 -18.98188 -18.58796 -18.33149 -17.76940 -17.40303 -16.88314 -16.64693 -16.39063 -16.18800 -15.86719 -15.67031 -15.45062 -15.20690 -15.00228 -14.97113 -14.68164 -14.50152 -14.40743 -14.35772 -14.08743 -13.94189 -13.79714 -13.43444 -13.25808 -12.96542 -12.83494 -12.80822 -12.60583 -12.43570 -12.38293 -12.26972 -12.04987 -11.98265 -11.64002 -11.60153 -11.44579 -11.28622 -10.71276 -10.36918 -10.23750 -9.79670 -9.12094 -8.41332 -6.02351 1.05863 1.29080 1.35744 1.44313 1.53428 1.97508 2.23089 2.62911 2.66603 2.97086 3.14479 3.21833 3.51787 3.68632 3.79146 3.82761 3.92535 4.08081 4.11281 4.18936 4.29301 4.31851 4.36790 4.41543 4.49416 4.53383 4.53911 4.63558 4.73000 4.78353 4.86463 4.92930 4.97554 5.03823 5.21254 5.26507 5.28416 5.31587 5.48692 5.53412 5.60724 5.90728 6.03509 6.16923 6.29347 6.60948 6.78374 6.89264 7.40662 7.99863 8.76806 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002300 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.112750 B =12172.863562 C =12464.926274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C 0.091 3.909 4 N -0.587 5.587 5 C 0.461 3.539 6 O -0.536 6.536 7 C 0.259 3.741 8 F -0.178 7.178 9 F -0.198 7.198 10 C 0.156 3.844 11 C -0.122 4.122 12 C 0.067 3.933 13 N -0.545 5.545 14 C 0.057 3.943 15 C 0.448 3.552 16 O -0.608 6.608 17 N -0.593 5.593 18 C -0.328 4.328 19 H 0.050 0.950 20 C -0.018 4.018 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.230 1.230 26 C 0.063 3.937 27 C -0.127 4.127 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.188 0.812 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.570 17.654 7.709 35.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C -0.030 4.030 4 N -0.318 5.318 5 C 0.245 3.755 6 O -0.413 6.413 7 C 0.202 3.798 8 F -0.159 7.159 9 F -0.179 7.179 10 C 0.054 3.946 11 C -0.160 4.160 12 C -0.061 4.061 13 N -0.271 5.271 14 C -0.074 4.074 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.235 5.235 18 C -0.457 4.457 19 H 0.068 0.932 20 C -0.216 4.216 21 N -0.578 5.578 22 Si 0.788 3.212 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.153 1.153 26 C -0.064 4.064 27 C -0.165 4.165 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.205 0.795 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.117 0.883 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.516 16.933 8.711 34.289 hybrid contribution 0.542 -0.742 -1.219 1.527 sum -27.974 16.191 7.492 33.178 Atomic orbital electron populations 1.21619 0.93470 1.02067 1.02798 1.22099 0.97665 0.96943 1.01740 1.22497 0.76051 0.97960 1.06515 1.48201 1.08377 1.70466 1.04764 1.21614 0.88429 0.78323 0.87156 1.90867 1.15111 1.48433 1.86882 1.22092 0.75020 0.96698 0.85972 1.92991 1.39023 1.88967 1.94959 1.93034 1.80413 1.78989 1.65477 1.21264 0.93722 0.94451 0.85179 1.21840 0.98252 0.98127 0.97824 1.21926 0.93752 0.93770 0.96695 1.61342 1.21497 1.03655 1.40613 1.21803 0.94801 0.97126 0.93636 1.21042 0.83954 0.88411 0.82968 1.90558 1.71984 1.51780 1.34882 1.42039 1.35065 1.27874 1.18554 1.18976 1.15169 1.06625 1.04912 0.93155 1.26165 0.94723 0.98748 1.01971 1.69817 1.23135 1.30656 1.34203 0.85319 0.80866 0.78350 0.76655 1.18116 1.19984 1.15271 1.22129 0.96182 0.90877 0.97249 1.21956 0.98190 0.97815 0.98590 0.93063 0.91608 0.91446 0.93047 0.92612 0.86576 0.87679 0.79548 0.86244 0.91670 0.93288 0.93094 0.93563 0.86079 0.90032 0.77462 0.91167 0.89323 0.92158 0.88291 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.15 -1.76 5.57 30.59 0.17 -1.59 16 3 C 0.09 0.81 4.93 86.38 0.43 1.23 16 4 N -0.59 -9.71 2.43 -797.41 -1.94 -11.65 16 5 C 0.46 9.99 6.97 87.66 0.61 10.60 16 6 O -0.54 -17.66 13.05 -3.01 -0.04 -17.70 16 7 C 0.26 3.71 5.37 71.24 0.38 4.09 16 8 F -0.18 -2.17 11.11 44.97 0.50 -1.67 16 9 F -0.20 -4.40 17.13 44.97 0.77 -3.63 16 10 C 0.16 3.02 2.62 45.07 0.12 3.14 16 11 C -0.12 -3.57 5.38 30.65 0.16 -3.40 16 12 C 0.07 2.17 5.12 86.33 0.44 2.61 16 13 N -0.55 -17.46 4.34 -900.91 -3.91 -21.37 16 14 C 0.06 1.83 5.45 85.56 0.47 2.30 16 15 C 0.45 21.30 7.32 87.66 0.64 21.94 16 16 O -0.61 -35.98 14.30 -3.07 -0.04 -36.02 16 17 N -0.59 -28.95 5.09 -306.98 -1.56 -30.52 16 18 C -0.33 -19.86 10.16 84.04 0.85 -19.01 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 20 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 21 N -0.94 -58.02 13.96 21.66 0.30 -57.72 16 22 Si 0.97 39.51 27.74 68.60 1.90 41.41 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 26 C 0.06 1.32 5.46 86.33 0.47 1.79 16 27 C -0.13 -2.56 5.29 30.64 0.16 -2.40 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.90 6.33 -2.39 -0.02 0.88 16 33 H 0.12 0.61 5.66 -2.39 -0.01 0.60 16 34 H 0.11 0.47 7.84 -2.39 -0.02 0.45 16 35 H 0.19 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.12 1.56 7.74 -2.39 -0.02 1.54 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.92 6.21 -2.39 -0.01 1.90 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.99 6.07 -2.39 -0.01 1.97 16 41 H 0.12 3.18 7.97 -2.39 -0.02 3.16 16 42 H 0.08 2.08 8.12 -2.38 -0.02 2.06 16 43 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 44 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.09 1.68 8.01 -2.39 -0.02 1.66 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.72 6.02 -2.38 -0.01 1.71 16 Total: -1.00 -90.09 379.62 2.46 -87.63 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.39 Total: 30.92 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 6.09 Total: 20.31 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -7.11 Total: -121.25 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -0.08 Total: -53.72 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.27 Total: -5.30 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.41 kcal Total: -90.09 2.46 -87.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490608634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.643 kcal (2) G-P(sol) polarization free energy of solvation -90.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds