Wall clock time and date at job start Wed Apr 1 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31881 * 118.95493 * 2 1 4 4 C 1.32128 * 120.96985 * 179.68348 * 3 2 1 5 5 C 1.39974 * 118.92136 * 0.60983 * 4 3 2 6 6 C 1.47828 * 120.93858 * 179.70109 * 5 4 3 7 7 O 1.21555 * 119.99949 * 173.87958 * 6 5 4 8 8 N 1.34775 * 120.00279 * 353.87661 * 6 5 4 9 9 C 1.46497 * 120.00062 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.85110 * 23.80266 * 9 8 6 11 11 C 1.53777 * 113.61485 * 155.00161 * 9 8 6 12 12 C 1.53773 * 87.08475 * 89.11755 * 11 9 8 13 13 H 1.09004 * 113.61399 * 270.88626 * 12 11 9 14 14 N 1.46896 * 113.62023 * 140.06523 * 12 11 9 15 15 C 1.46900 * 111.00417 * 155.00064 * 14 12 11 16 16 C 1.50695 * 109.47192 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00323 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00179 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00421 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00207 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99703 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47478 * 89.99140 * 23 21 19 25 25 H 1.48505 * 109.47253 * 209.99895 * 23 21 19 26 26 H 1.48502 * 109.46984 * 329.99425 * 23 21 19 27 27 C 1.53785 * 113.61742 * 252.49990 * 9 8 6 28 28 C 1.39931 * 118.11797 * 359.42537 * 5 4 3 29 29 C 1.50700 * 120.53535 * 180.29170 * 28 5 4 30 30 N 1.31849 * 118.95050 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46982 * 269.97901 * 1 2 3 32 32 H 1.09001 * 109.46795 * 29.97804 * 1 2 3 33 33 H 1.08998 * 109.47336 * 149.97840 * 1 2 3 34 34 H 1.07997 * 120.54463 * 180.31029 * 4 3 2 35 35 H 0.96995 * 119.99531 * 0.02562 * 8 6 5 36 36 H 1.09000 * 113.61720 * 203.66700 * 11 9 8 37 37 H 1.08998 * 113.61442 * 334.48280 * 11 9 8 38 38 H 1.00896 * 110.99813 * 31.04657 * 14 12 11 39 39 H 1.09003 * 109.47085 * 300.00147 * 15 14 12 40 40 H 1.09000 * 109.46960 * 60.00216 * 15 14 12 41 41 H 0.97009 * 119.99702 * 0.02562 * 18 16 15 42 42 H 0.96999 * 119.99386 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.60832 * 25.42808 * 27 9 8 44 44 H 1.08998 * 113.61627 * 156.33592 * 27 9 8 45 45 H 1.09008 * 109.46526 * 83.74140 * 29 28 5 46 46 H 1.09000 * 109.46828 * 203.73379 * 29 28 5 47 47 H 1.08995 * 109.47155 * 323.74132 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4659 1.2004 0.0063 5 6 4.1856 -0.0001 -0.0001 6 6 5.6638 -0.0002 -0.0001 7 8 6.2716 -1.0474 0.1066 8 7 6.3378 1.1610 -0.1185 9 6 7.8027 1.1609 -0.1191 10 1 8.2258 0.2055 -0.4296 11 6 8.4186 2.3710 -0.8409 12 6 8.3662 3.1040 0.5098 13 1 7.4301 3.6354 0.6823 14 7 9.5497 3.9323 0.7763 15 6 9.2311 5.0210 1.7097 16 6 10.4665 5.8475 1.9579 17 8 11.5098 5.5580 1.4113 18 7 10.4123 6.9080 2.7879 19 6 11.5363 7.6597 3.0141 20 1 12.4653 7.4018 2.5275 21 6 11.4805 8.7526 3.8703 22 7 10.3502 9.0660 4.4629 23 14 13.0118 9.7772 4.1779 24 1 13.0808 10.8760 3.1813 25 1 12.9561 10.3524 5.5459 26 1 14.2162 8.9177 4.0512 27 6 8.4194 1.7183 1.1747 28 6 3.4661 -1.2003 -0.0005 29 6 4.1856 -2.5244 -0.0006 30 7 2.1452 -1.1537 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 3.9817 2.1493 0.0113 35 1 5.8528 1.9967 -0.2033 36 1 9.4314 2.1945 -1.2029 37 1 7.7674 2.8044 -1.6000 38 1 9.9385 4.2939 -0.0817 39 1 8.4526 5.6517 1.2803 40 1 8.8796 4.6005 2.6519 41 1 9.5781 7.1389 3.2260 42 1 10.3113 9.8292 5.0603 43 1 7.7682 1.6258 2.0438 44 1 9.4325 1.3634 1.3638 45 1 4.4573 -2.7903 1.0211 46 1 3.5326 -3.2927 -0.4145 47 1 5.0873 -2.4479 -0.6081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490938612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:13 Heat of formation + Delta-G solvation = 1.355929 kcal Electronic energy + Delta-G solvation = -28890.116462 eV Core-core repulsion = 24687.788136 eV Total energy + Delta-G solvation = -4202.328326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86681 -40.35651 -38.80078 -38.01113 -35.20875 -34.56267 -34.14156 -33.76129 -32.46809 -31.21359 -29.67057 -28.96346 -26.91358 -25.87198 -24.72232 -24.37109 -23.35208 -22.56219 -21.51432 -19.68839 -19.20083 -18.51388 -18.01663 -17.86758 -16.59354 -16.44829 -16.11998 -16.03036 -15.36359 -15.23495 -14.98900 -14.69134 -14.59695 -14.24516 -14.07381 -13.80355 -13.67099 -13.49814 -13.39238 -12.89561 -12.86430 -12.74447 -12.55241 -12.45695 -12.12176 -12.06572 -11.96624 -11.60328 -11.41138 -11.06286 -11.06063 -10.69862 -10.62087 -10.40740 -10.23360 -10.13644 -9.97179 -9.80440 -9.52999 -9.37539 -8.47851 -8.12133 -7.98208 -6.43757 -3.84635 -0.08283 0.51428 2.35784 2.58200 3.16424 3.22536 3.25304 3.31363 3.31552 3.47971 3.82417 3.88309 4.08563 4.14529 4.28261 4.32898 4.37059 4.41783 4.59670 4.76032 4.86282 4.90212 5.02227 5.12241 5.16452 5.23865 5.28695 5.30241 5.33570 5.42398 5.51537 5.61365 5.66710 5.72264 5.79331 5.84007 5.93760 5.97867 6.01834 6.20844 6.34011 6.40400 6.99527 7.21594 7.51008 7.53387 7.61087 7.71550 8.04236 8.58956 9.15852 9.52045 10.03337 10.73954 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.001658 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.443407 B =16886.055002 C =18000.169150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.342 3.658 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.257 4.257 6 C 0.574 3.426 7 O -0.522 6.522 8 N -0.705 5.705 9 C 0.119 3.881 10 H 0.109 0.891 11 C -0.148 4.148 12 C 0.058 3.942 13 H 0.069 0.931 14 N -0.655 5.655 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.135 4.135 28 C 0.242 3.758 29 C -0.113 4.113 30 N -0.525 5.525 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.398 0.602 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 -18.311 -10.315 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 N -0.241 5.241 4 C 0.025 3.975 5 C -0.265 4.265 6 C 0.360 3.640 7 O -0.400 6.400 8 N -0.356 5.356 9 C 0.013 3.987 10 H 0.127 0.873 11 C -0.186 4.186 12 C -0.052 4.052 13 H 0.086 0.914 14 N -0.287 5.287 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.174 4.174 28 C 0.095 3.905 29 C -0.170 4.170 30 N -0.241 5.241 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.188 0.812 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.496 -19.505 -9.989 29.332 hybrid contribution 0.295 2.051 0.063 2.073 sum -19.202 -17.454 -9.926 27.782 Atomic orbital electron populations 1.20676 0.85136 1.04627 1.04378 1.23576 0.98580 0.83267 0.86896 1.68313 1.09585 1.30144 1.16096 1.23468 0.89796 0.97567 0.86699 1.21557 0.95884 0.96503 1.12536 1.17685 0.85796 0.84059 0.76469 1.90758 1.69430 1.30684 1.49087 1.45591 1.07116 1.08726 1.74160 1.21831 0.78481 1.00116 0.98239 0.87287 1.23619 1.02564 0.95708 0.96721 1.23116 0.92941 0.93825 0.95364 0.91363 1.60203 1.27167 1.23419 1.17930 1.21735 0.96412 0.92367 0.97776 1.19817 0.89819 0.83473 0.84367 1.90523 1.31661 1.71333 1.53253 1.41872 1.12729 1.25091 1.40321 1.19710 0.90851 1.07267 1.25121 0.87902 1.25269 0.98369 0.97839 0.96484 1.69614 1.25519 1.28758 1.30425 0.85849 0.81274 0.79621 0.77497 1.20422 1.20914 1.19385 1.23558 1.02186 0.95289 0.96413 1.22034 0.88765 0.95729 0.83976 1.21121 1.00547 0.90399 1.04910 1.68297 1.09157 1.30106 1.16509 0.89020 0.89144 0.89217 0.81156 0.76629 0.87540 0.90990 0.82833 0.93921 0.89673 0.77482 0.91866 0.91459 0.87872 0.88927 0.90491 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.31 36.01 0.37 -0.10 16 2 C 0.34 3.01 7.64 -157.07 -1.20 1.81 16 3 N -0.53 -4.77 10.31 -10.39 -0.11 -4.88 16 4 C 0.19 1.48 10.80 -16.77 -0.18 1.30 16 5 C -0.26 -2.28 5.91 -104.69 -0.62 -2.90 16 6 C 0.57 5.44 7.73 -12.34 -0.10 5.34 16 7 O -0.52 -6.26 13.13 5.32 0.07 -6.19 16 8 N -0.71 -5.38 5.22 -53.97 -0.28 -5.66 16 9 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 10 H 0.11 1.06 7.46 -51.93 -0.39 0.67 16 11 C -0.15 -1.24 7.40 -25.92 -0.19 -1.43 16 12 C 0.06 0.62 4.01 -66.90 -0.27 0.35 16 13 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 14 N -0.65 -9.79 6.19 -107.14 -0.66 -10.45 16 15 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 16 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 17 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 18 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 C -0.13 -1.42 7.68 -25.91 -0.20 -1.62 16 28 C 0.24 2.31 6.87 -81.82 -0.56 1.74 16 29 C -0.11 -0.92 9.00 36.01 0.32 -0.60 16 30 N -0.53 -5.11 10.25 -6.67 -0.07 -5.18 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.17 0.76 6.58 -52.49 -0.35 0.42 16 35 H 0.40 2.13 6.88 -40.82 -0.28 1.84 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.35 5.39 8.24 -39.29 -0.32 5.07 16 39 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.11 0.97 5.94 -51.93 -0.31 0.66 16 LS Contribution 396.66 15.07 5.98 5.98 Total: -1.00 -34.04 396.66 -9.15 -43.18 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.54 Total: 13.09 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -3.27 Total: 7.61 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.45 Total: -64.04 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.04 -9.15 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490938612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.541 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds