Wall clock time and date at job start Wed Apr 1 2020 04:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31881 * 118.95493 * 2 1 4 4 C 1.32128 * 120.96985 * 179.68348 * 3 2 1 5 5 C 1.39974 * 118.92136 * 0.60983 * 4 3 2 6 6 C 1.47828 * 120.93858 * 179.70109 * 5 4 3 7 7 O 1.21555 * 119.99949 * 173.87958 * 6 5 4 8 8 N 1.34775 * 120.00279 * 353.87661 * 6 5 4 9 9 C 1.46497 * 120.00062 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.85110 * 23.80266 * 9 8 6 11 11 C 1.53777 * 113.61485 * 155.00161 * 9 8 6 12 12 C 1.53773 * 87.08475 * 89.11755 * 11 9 8 13 13 H 1.09004 * 113.61399 * 270.88626 * 12 11 9 14 14 N 1.46896 * 113.62023 * 140.06523 * 12 11 9 15 15 C 1.46900 * 111.00417 * 155.00064 * 14 12 11 16 16 C 1.50695 * 109.47192 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00323 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00179 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00421 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00207 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99703 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47478 * 89.99140 * 23 21 19 25 25 H 1.48505 * 109.47253 * 209.99895 * 23 21 19 26 26 H 1.48502 * 109.46984 * 329.99425 * 23 21 19 27 27 C 1.53785 * 113.61742 * 252.49990 * 9 8 6 28 28 C 1.39931 * 118.11797 * 359.42537 * 5 4 3 29 29 C 1.50700 * 120.53535 * 180.29170 * 28 5 4 30 30 N 1.31849 * 118.95050 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46982 * 269.97901 * 1 2 3 32 32 H 1.09001 * 109.46795 * 29.97804 * 1 2 3 33 33 H 1.08998 * 109.47336 * 149.97840 * 1 2 3 34 34 H 1.07997 * 120.54463 * 180.31029 * 4 3 2 35 35 H 0.96995 * 119.99531 * 0.02562 * 8 6 5 36 36 H 1.09000 * 113.61720 * 203.66700 * 11 9 8 37 37 H 1.08998 * 113.61442 * 334.48280 * 11 9 8 38 38 H 1.00896 * 110.99813 * 31.04657 * 14 12 11 39 39 H 1.09003 * 109.47085 * 300.00147 * 15 14 12 40 40 H 1.09000 * 109.46960 * 60.00216 * 15 14 12 41 41 H 0.97009 * 119.99702 * 0.02562 * 18 16 15 42 42 H 0.96999 * 119.99386 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.60832 * 25.42808 * 27 9 8 44 44 H 1.08998 * 113.61627 * 156.33592 * 27 9 8 45 45 H 1.09008 * 109.46526 * 83.74140 * 29 28 5 46 46 H 1.09000 * 109.46828 * 203.73379 * 29 28 5 47 47 H 1.08995 * 109.47155 * 323.74132 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4659 1.2004 0.0063 5 6 4.1856 -0.0001 -0.0001 6 6 5.6638 -0.0002 -0.0001 7 8 6.2716 -1.0474 0.1066 8 7 6.3378 1.1610 -0.1185 9 6 7.8027 1.1609 -0.1191 10 1 8.2258 0.2055 -0.4296 11 6 8.4186 2.3710 -0.8409 12 6 8.3662 3.1040 0.5098 13 1 7.4301 3.6354 0.6823 14 7 9.5497 3.9323 0.7763 15 6 9.2311 5.0210 1.7097 16 6 10.4665 5.8475 1.9579 17 8 11.5098 5.5580 1.4113 18 7 10.4123 6.9080 2.7879 19 6 11.5363 7.6597 3.0141 20 1 12.4653 7.4018 2.5275 21 6 11.4805 8.7526 3.8703 22 7 10.3502 9.0660 4.4629 23 14 13.0118 9.7772 4.1779 24 1 13.0808 10.8760 3.1813 25 1 12.9561 10.3524 5.5459 26 1 14.2162 8.9177 4.0512 27 6 8.4194 1.7183 1.1747 28 6 3.4661 -1.2003 -0.0005 29 6 4.1856 -2.5244 -0.0006 30 7 2.1452 -1.1537 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 3.9817 2.1493 0.0113 35 1 5.8528 1.9967 -0.2033 36 1 9.4314 2.1945 -1.2029 37 1 7.7674 2.8044 -1.6000 38 1 9.9385 4.2939 -0.0817 39 1 8.4526 5.6517 1.2803 40 1 8.8796 4.6005 2.6519 41 1 9.5781 7.1389 3.2260 42 1 10.3113 9.8292 5.0603 43 1 7.7682 1.6258 2.0438 44 1 9.4325 1.3634 1.3638 45 1 4.4573 -2.7903 1.0211 46 1 3.5326 -3.2927 -0.4145 47 1 5.0873 -2.4479 -0.6081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490938612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:12 Heat of formation + Delta-G solvation = -24.784401 kcal Electronic energy + Delta-G solvation = -28891.249991 eV Core-core repulsion = 24687.788136 eV Total energy + Delta-G solvation = -4203.461856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51164 -41.12700 -40.14008 -39.32732 -36.19338 -35.80763 -35.27412 -34.72431 -33.45280 -33.15154 -30.21217 -29.64065 -28.39241 -26.67971 -26.15780 -25.15529 -24.29236 -23.33374 -22.22039 -21.12391 -20.37872 -19.89442 -19.18940 -18.64648 -17.88438 -17.12186 -17.01048 -16.83126 -16.75681 -16.40580 -16.11446 -15.87686 -15.74622 -15.49229 -15.20141 -14.86760 -14.63104 -14.28256 -14.13377 -14.07218 -13.52666 -13.44880 -13.39028 -13.31740 -13.23829 -13.18698 -13.02285 -12.87491 -12.74619 -12.53964 -12.40848 -12.12259 -11.72078 -11.52994 -11.48513 -11.45430 -10.88564 -10.63050 -10.45481 -10.32627 -10.07756 -10.01231 -9.28385 -8.46779 -5.95389 -0.72386 -0.12276 1.38115 1.42121 1.54744 1.65190 1.89385 2.06049 2.29454 2.58097 2.77792 2.89513 2.97996 3.20871 3.23616 3.49300 3.52103 3.56462 3.66377 3.76261 3.98780 4.05376 4.14831 4.31555 4.33578 4.48770 4.58906 4.60783 4.62201 4.65701 4.68800 4.79782 4.83502 4.89023 4.90159 4.98423 5.09527 5.14355 5.18425 5.33595 5.41073 5.52590 5.77475 5.94062 6.18091 6.36542 6.46299 6.60510 6.87976 7.04312 7.12943 7.56902 8.12235 8.70540 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.001658 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.443407 B =16886.055002 C =18000.169150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.332 3.668 3 N -0.540 5.540 4 C 0.198 3.802 5 C -0.265 4.265 6 C 0.576 3.424 7 O -0.552 6.552 8 N -0.692 5.692 9 C 0.129 3.871 10 H 0.100 0.900 11 C -0.133 4.133 12 C 0.057 3.943 13 H 0.091 0.909 14 N -0.671 5.671 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.138 4.138 28 C 0.227 3.773 29 C -0.107 4.107 30 N -0.541 5.541 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.203 0.797 35 H 0.413 0.587 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.348 0.652 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.381 -17.601 -10.683 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 N -0.255 5.255 4 C 0.030 3.970 5 C -0.273 4.273 6 C 0.362 3.638 7 O -0.431 6.431 8 N -0.343 5.343 9 C 0.023 3.977 10 H 0.118 0.882 11 C -0.171 4.171 12 C -0.053 4.053 13 H 0.109 0.891 14 N -0.304 5.304 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.178 4.178 28 C 0.081 3.919 29 C -0.164 4.164 30 N -0.257 5.257 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.220 0.780 35 H 0.250 0.750 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.168 0.832 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.069 -18.783 -10.358 30.067 hybrid contribution 0.734 1.772 0.166 1.926 sum -20.335 -17.011 -10.191 28.403 Atomic orbital electron populations 1.20805 0.83000 1.05527 1.05309 1.24236 1.00016 0.83055 0.85975 1.68418 1.10130 1.30203 1.16786 1.23972 0.89558 0.98352 0.85096 1.21509 0.95427 0.96875 1.13493 1.17780 0.86020 0.84000 0.75951 1.90752 1.69999 1.31841 1.50553 1.45431 1.06595 1.08940 1.73346 1.21630 0.78977 0.99891 0.97198 0.88225 1.23522 1.02836 0.94615 0.96164 1.23278 0.92189 0.93006 0.96812 0.89144 1.60171 1.29687 1.22893 1.17649 1.21584 0.93393 0.92444 0.99267 1.20964 0.91351 0.82828 0.82464 1.90492 1.34004 1.72191 1.54358 1.41947 1.12247 1.25751 1.41168 1.19669 0.91163 1.08989 1.26596 0.90349 1.26031 1.01302 0.98274 0.95673 1.69671 1.26827 1.29160 1.30445 0.84933 0.77515 0.77979 0.77944 1.19535 1.19611 1.19877 1.23531 1.01435 0.95666 0.97158 1.22276 0.89125 0.96451 0.84082 1.21052 1.00229 0.90442 1.04660 1.68350 1.09234 1.30736 1.17400 0.87893 0.88119 0.88411 0.78018 0.74957 0.87960 0.88702 0.83246 0.91149 0.88348 0.76976 0.91315 0.91692 0.89579 0.89084 0.89585 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.31 71.24 0.73 -0.04 16 2 C 0.33 5.41 7.64 138.71 1.06 6.47 16 3 N -0.54 -8.80 10.31 -186.80 -1.93 -10.73 16 4 C 0.20 2.63 10.80 85.07 0.92 3.54 16 5 C -0.27 -4.38 5.91 -19.91 -0.12 -4.50 16 6 C 0.58 10.22 7.73 86.78 0.67 10.89 16 7 O -0.55 -13.08 13.13 -3.89 -0.05 -13.13 16 8 N -0.69 -8.97 5.22 -442.93 -2.31 -11.29 16 9 C 0.13 2.04 4.32 45.52 0.20 2.24 16 10 H 0.10 1.85 7.46 -2.39 -0.02 1.83 16 11 C -0.13 -1.91 7.40 31.12 0.23 -1.68 16 12 C 0.06 1.07 4.01 45.44 0.18 1.25 16 13 H 0.09 1.35 7.87 -2.38 -0.02 1.33 16 14 N -0.67 -19.07 6.19 -492.87 -3.05 -22.12 16 15 C 0.07 2.10 6.01 85.56 0.51 2.62 16 16 C 0.44 20.29 7.82 87.66 0.69 20.97 16 17 O -0.62 -34.07 15.78 -3.06 -0.05 -34.12 16 18 N -0.57 -29.04 5.29 -306.99 -1.62 -30.67 16 19 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C -0.14 -2.72 7.68 31.12 0.24 -2.48 16 28 C 0.23 4.22 6.87 42.92 0.29 4.51 16 29 C -0.11 -1.76 9.00 71.24 0.64 -1.12 16 30 N -0.54 -10.14 10.25 -175.03 -1.79 -11.93 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.20 1.12 6.58 -2.91 -0.02 1.10 16 35 H 0.41 2.98 6.88 -92.71 -0.64 2.34 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.35 10.29 8.24 -89.70 -0.74 9.55 16 39 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 40 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.40 18.97 7.90 -92.70 -0.73 18.24 16 42 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.10 1.82 5.94 -2.39 -0.01 1.80 16 Total: -1.00 -74.58 396.66 -2.03 -76.61 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -1.06 Total: 37.27 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 7.53 Total: 24.36 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -10.42 Total: -135.69 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.10 Total: -47.25 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -74.58 -2.03 -76.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490938612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.826 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds