Wall clock time and date at job start Wed Apr 1 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47426 * 2 1 4 4 N 1.46904 * 109.47479 * 174.89386 * 3 2 1 5 5 C 1.46895 * 111.00070 * 76.02353 * 4 3 2 6 6 C 1.53002 * 109.46925 * 199.54749 * 5 4 3 7 7 N 1.46502 * 109.47017 * 174.88857 * 6 5 4 8 8 C 1.34778 * 119.99968 * 180.02562 * 7 6 5 9 9 O 1.21609 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.47372 * 119.99800 * 180.02562 * 8 7 6 11 11 C 1.38126 * 126.47159 * 359.96735 * 10 8 7 12 12 N 1.34427 * 108.38856 * 180.02562 * 11 10 8 13 13 H 0.97001 * 125.38937 * 179.97438 * 12 11 10 14 14 C 1.37705 * 109.22061 * 359.76116 * 12 11 10 15 15 C 1.43205 * 125.83866 * 180.25164 * 14 12 11 16 16 N 9.61775 * 139.49895 * 74.08989 * 5 1 2 17 17 C 1.36349 * 108.31382 * 0.39826 * 14 12 11 18 18 C 1.46894 * 110.99934 * 199.97967 * 4 3 2 19 19 C 1.50701 * 109.47355 * 66.04452 * 18 4 3 20 20 O 1.21291 * 119.99814 * 359.97438 * 19 18 4 21 21 N 1.34776 * 120.00029 * 180.02562 * 19 18 4 22 22 C 1.37097 * 119.99841 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99900 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00016 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99811 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47013 * 90.00563 * 26 24 22 28 28 H 1.48507 * 109.47120 * 210.00145 * 26 24 22 29 29 H 1.48494 * 109.47387 * 330.00209 * 26 24 22 30 30 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47007 * 299.99827 * 1 2 3 32 32 H 1.08993 * 109.47511 * 59.99566 * 1 2 3 33 33 H 1.09004 * 109.47007 * 240.00173 * 2 1 3 34 34 H 1.09001 * 109.47789 * 120.00453 * 2 1 3 35 35 H 1.09004 * 109.46927 * 54.89342 * 3 2 1 36 36 H 1.09001 * 109.46990 * 294.88929 * 3 2 1 37 37 H 1.08998 * 109.47081 * 79.54307 * 5 4 3 38 38 H 1.09001 * 109.47257 * 319.54458 * 5 4 3 39 39 H 1.08992 * 109.47112 * 54.88607 * 6 5 4 40 40 H 1.09000 * 109.46632 * 294.88323 * 6 5 4 41 41 H 0.96998 * 119.99874 * 359.97438 * 7 6 5 42 42 H 1.08002 * 125.80549 * 0.05761 * 11 10 8 43 43 H 1.08000 * 126.49209 * 179.88380 * 17 14 12 44 44 H 1.08997 * 109.47302 * 186.04416 * 18 4 3 45 45 H 1.09005 * 109.47128 * 306.04282 * 18 4 3 46 46 H 0.97002 * 120.00102 * 359.97438 * 21 19 18 47 47 H 0.97005 * 119.99851 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1233 5 6 4.1397 1.0744 -1.1482 6 6 5.5751 0.6145 -0.8858 7 7 6.1690 0.1308 -2.1346 8 6 7.4362 -0.3280 -2.1448 9 8 8.0868 -0.3401 -1.1174 10 6 8.0338 -0.8141 -3.4012 11 6 7.4206 -0.8603 -4.6380 12 7 8.2939 -1.3667 -5.5257 13 1 8.1180 -1.5075 -6.4692 14 6 9.4794 -1.6494 -4.8846 15 6 10.6532 -2.1968 -5.4955 16 7 11.5844 -2.6312 -5.9800 17 6 9.3432 -1.3219 -3.5680 18 6 3.9907 2.7471 0.5959 19 6 3.5119 2.9811 2.0056 20 8 2.8316 2.1449 2.5616 21 7 3.8387 4.1199 2.6480 22 6 3.4036 4.3325 3.9306 23 1 2.7985 3.5876 4.4261 24 6 3.7402 5.5068 4.5928 25 7 3.3226 5.7108 5.8220 26 14 4.7861 6.7955 3.7356 27 1 3.9048 7.7481 3.0137 28 1 5.5897 7.5318 4.7444 29 1 5.6953 6.1312 2.7675 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6039 1.9820 0.8408 36 1 1.7533 1.9292 -0.9322 37 1 4.1505 1.9376 -1.8137 38 1 3.5779 0.2643 -1.6132 39 1 5.5702 -0.1898 -0.1503 40 1 6.1608 1.4513 -0.5052 41 1 5.6499 0.1401 -2.9540 42 1 6.4113 -0.5431 -4.8551 43 1 10.0945 -1.4261 -2.7992 44 1 5.0804 2.7568 0.5761 45 1 3.6085 3.5351 -0.0531 46 1 4.3825 4.7888 2.2032 47 1 3.5579 6.5304 6.2844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493287107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:05 Heat of formation + Delta-G solvation = 14.112961 kcal Electronic energy + Delta-G solvation = -28906.419081 eV Core-core repulsion = 24704.643941 eV Total energy + Delta-G solvation = -4201.775139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06484 -39.51709 -38.85873 -37.08847 -36.97154 -34.94705 -33.88207 -33.07713 -32.08117 -31.62658 -30.66863 -29.09043 -27.64078 -25.08483 -24.28662 -23.16815 -22.84757 -21.76655 -20.78017 -20.63888 -19.76366 -19.31907 -18.28469 -16.92157 -16.64848 -16.26919 -15.90346 -15.80750 -15.47198 -15.01785 -14.86498 -14.85302 -14.68372 -14.43039 -13.98701 -13.75076 -13.65185 -13.51685 -13.43738 -13.23457 -13.12683 -13.01325 -12.81207 -12.56033 -12.34395 -11.98523 -11.79483 -11.63993 -11.52697 -11.24485 -11.01113 -10.67259 -10.57509 -10.34825 -10.17993 -9.95141 -9.75303 -9.50172 -9.21697 -8.95640 -8.54188 -8.15686 -8.03575 -6.28656 -3.79810 0.77260 1.34649 1.69756 2.55610 2.84275 2.87499 3.05405 3.08382 3.17365 3.25870 3.46323 3.75890 3.98266 4.12717 4.24197 4.36812 4.63126 4.68290 4.85056 4.96175 5.14074 5.18083 5.22789 5.31444 5.33844 5.36202 5.55112 5.58997 5.60781 5.78665 5.81516 5.86932 5.90023 5.98996 5.99925 6.00801 6.06599 6.23598 6.27132 6.47775 6.49119 6.53583 6.88224 7.15131 7.24160 7.34693 7.60731 8.10256 8.17010 8.62612 8.97900 9.45150 9.85864 10.84444 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002023 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.053355 B =13839.755165 C =15825.675129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.057 3.943 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.122 3.878 7 N -0.727 5.727 8 C 0.586 3.414 9 O -0.533 6.533 10 C -0.220 4.220 11 C 0.082 3.918 12 N -0.519 5.519 13 H 0.427 0.573 14 C 0.044 3.956 15 C 0.278 3.722 16 N -0.402 5.402 17 C -0.046 4.046 18 C 0.039 3.961 19 C 0.452 3.548 20 O -0.556 6.556 21 N -0.591 5.591 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.878 3.122 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.023 0.977 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.188 0.812 43 H 0.162 0.838 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -10.791 -27.572 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.085 4.085 6 C -0.002 4.002 7 N -0.379 5.379 8 C 0.373 3.627 9 O -0.409 6.409 10 C -0.230 4.230 11 C -0.060 4.060 12 N -0.113 5.113 13 H 0.265 0.735 14 C -0.068 4.068 15 C -0.038 4.038 16 N -0.079 5.079 17 C -0.075 4.075 18 C -0.092 4.092 19 C 0.238 3.762 20 O -0.438 6.438 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.228 0.772 42 H 0.204 0.796 43 H 0.180 0.820 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.302 -12.282 -26.781 29.936 hybrid contribution -0.071 1.971 -1.835 2.693 sum 5.230 -10.311 -28.615 30.863 Atomic orbital electron populations 1.21719 0.96068 1.01237 1.01748 1.21425 0.94943 0.96592 1.02053 1.22268 0.86219 0.97754 1.00803 1.61389 1.06666 1.29122 1.26442 1.22268 0.94519 1.00144 0.91521 1.21365 0.92682 1.00528 0.85633 1.45730 1.13998 1.65784 1.12380 1.17276 0.81055 0.77104 0.87255 1.90845 1.61309 1.55148 1.33634 1.19667 0.96425 1.13690 0.93242 1.22503 0.95885 0.99158 0.88427 1.41563 1.10019 1.48111 1.11627 0.73457 1.15160 0.84488 1.15466 0.91637 1.24273 0.92458 0.93089 0.93941 1.81351 1.10024 1.10295 1.06236 1.21146 0.96452 0.96764 0.93103 1.21982 1.01038 0.90198 0.95976 1.19606 0.85614 0.83398 0.87606 1.90553 1.40946 1.44388 1.67896 1.42220 1.48386 1.17506 1.15003 1.19418 1.30837 1.05020 0.87904 0.86255 1.25033 0.97863 0.97538 0.95724 1.69623 1.45074 1.26705 1.10778 0.86691 0.80747 0.82271 0.79813 1.19740 1.20198 1.19409 0.92978 0.92235 0.93420 0.93197 0.90598 0.88370 0.95870 0.94327 0.90113 0.89923 0.91183 0.77173 0.79551 0.82028 0.89071 0.93302 0.79771 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.31 16 2 C -0.11 -1.40 5.98 -26.74 -0.16 -1.56 16 3 C 0.06 0.80 4.46 -3.82 -0.02 0.79 16 4 N -0.51 -7.31 4.10 -236.07 -0.97 -8.27 16 5 C 0.04 0.43 4.92 -3.83 -0.02 0.41 16 6 C 0.12 1.29 5.71 -4.04 -0.02 1.26 16 7 N -0.73 -5.56 5.55 -61.40 -0.34 -5.90 16 8 C 0.59 5.91 7.81 -12.54 -0.10 5.81 16 9 O -0.53 -8.05 16.92 5.27 0.09 -7.96 16 10 C -0.22 -1.49 6.13 -105.01 -0.64 -2.13 16 11 C 0.08 0.21 11.43 -16.46 -0.19 0.02 16 12 N -0.52 -1.16 6.02 -10.29 -0.06 -1.22 16 13 H 0.43 -0.37 8.96 -40.82 -0.37 -0.73 16 14 C 0.04 0.24 6.90 -83.98 -0.58 -0.34 16 15 C 0.28 2.02 15.88 -22.47 -0.36 1.66 16 16 N -0.40 -3.92 18.54 41.84 0.78 -3.14 16 17 C -0.05 -0.33 10.59 -39.05 -0.41 -0.74 16 18 C 0.04 0.62 5.27 -4.98 -0.03 0.60 16 19 C 0.45 9.91 7.29 -10.99 -0.08 9.83 16 20 O -0.56 -14.27 14.12 5.55 0.08 -14.19 16 21 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 22 C -0.30 -8.47 10.16 -14.93 -0.15 -8.62 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 26 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.51 6.91 -51.93 -0.36 0.16 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.77 5.85 -51.93 -0.30 1.46 16 36 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 37 H 0.04 0.32 8.00 -51.93 -0.42 -0.09 16 38 H 0.08 0.65 6.58 -51.93 -0.34 0.31 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.85 6.95 -51.93 -0.36 0.49 16 41 H 0.39 1.45 7.38 -40.82 -0.30 1.15 16 42 H 0.19 -0.29 7.44 -52.49 -0.39 -0.68 16 43 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.09 1.30 6.71 -51.93 -0.35 0.96 16 45 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -37.57 401.83 -7.20 -44.78 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.35 Total: 7.34 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.48 Total: 6.71 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.12 Total: -57.33 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.17 Total: -22.15 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.57 -7.20 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493287107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.889 kcal (2) G-P(sol) polarization free energy of solvation -37.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds