Wall clock time and date at job start Wed Apr 1 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47426 * 2 1 4 4 N 1.46904 * 109.47479 * 174.89386 * 3 2 1 5 5 C 1.46895 * 111.00070 * 76.02353 * 4 3 2 6 6 C 1.53002 * 109.46925 * 199.54749 * 5 4 3 7 7 N 1.46502 * 109.47017 * 174.88857 * 6 5 4 8 8 C 1.34778 * 119.99968 * 180.02562 * 7 6 5 9 9 O 1.21609 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.47372 * 119.99800 * 180.02562 * 8 7 6 11 11 C 1.38126 * 126.47159 * 359.96735 * 10 8 7 12 12 N 1.34427 * 108.38856 * 180.02562 * 11 10 8 13 13 H 0.97001 * 125.38937 * 179.97438 * 12 11 10 14 14 C 1.37705 * 109.22061 * 359.76116 * 12 11 10 15 15 C 1.43205 * 125.83866 * 180.25164 * 14 12 11 16 16 N 9.61775 * 139.49895 * 74.08989 * 5 1 2 17 17 C 1.36349 * 108.31382 * 0.39826 * 14 12 11 18 18 C 1.46894 * 110.99934 * 199.97967 * 4 3 2 19 19 C 1.50701 * 109.47355 * 66.04452 * 18 4 3 20 20 O 1.21291 * 119.99814 * 359.97438 * 19 18 4 21 21 N 1.34776 * 120.00029 * 180.02562 * 19 18 4 22 22 C 1.37097 * 119.99841 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99900 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00016 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99811 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47013 * 90.00563 * 26 24 22 28 28 H 1.48507 * 109.47120 * 210.00145 * 26 24 22 29 29 H 1.48494 * 109.47387 * 330.00209 * 26 24 22 30 30 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47007 * 299.99827 * 1 2 3 32 32 H 1.08993 * 109.47511 * 59.99566 * 1 2 3 33 33 H 1.09004 * 109.47007 * 240.00173 * 2 1 3 34 34 H 1.09001 * 109.47789 * 120.00453 * 2 1 3 35 35 H 1.09004 * 109.46927 * 54.89342 * 3 2 1 36 36 H 1.09001 * 109.46990 * 294.88929 * 3 2 1 37 37 H 1.08998 * 109.47081 * 79.54307 * 5 4 3 38 38 H 1.09001 * 109.47257 * 319.54458 * 5 4 3 39 39 H 1.08992 * 109.47112 * 54.88607 * 6 5 4 40 40 H 1.09000 * 109.46632 * 294.88323 * 6 5 4 41 41 H 0.96998 * 119.99874 * 359.97438 * 7 6 5 42 42 H 1.08002 * 125.80549 * 0.05761 * 11 10 8 43 43 H 1.08000 * 126.49209 * 179.88380 * 17 14 12 44 44 H 1.08997 * 109.47302 * 186.04416 * 18 4 3 45 45 H 1.09005 * 109.47128 * 306.04282 * 18 4 3 46 46 H 0.97002 * 120.00102 * 359.97438 * 21 19 18 47 47 H 0.97005 * 119.99851 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1233 5 6 4.1397 1.0744 -1.1482 6 6 5.5751 0.6145 -0.8858 7 7 6.1690 0.1308 -2.1346 8 6 7.4362 -0.3280 -2.1448 9 8 8.0868 -0.3401 -1.1174 10 6 8.0338 -0.8141 -3.4012 11 6 7.4206 -0.8603 -4.6380 12 7 8.2939 -1.3667 -5.5257 13 1 8.1180 -1.5075 -6.4692 14 6 9.4794 -1.6494 -4.8846 15 6 10.6532 -2.1968 -5.4955 16 7 11.5844 -2.6312 -5.9800 17 6 9.3432 -1.3219 -3.5680 18 6 3.9907 2.7471 0.5959 19 6 3.5119 2.9811 2.0056 20 8 2.8316 2.1449 2.5616 21 7 3.8387 4.1199 2.6480 22 6 3.4036 4.3325 3.9306 23 1 2.7985 3.5876 4.4261 24 6 3.7402 5.5068 4.5928 25 7 3.3226 5.7108 5.8220 26 14 4.7861 6.7955 3.7356 27 1 3.9048 7.7481 3.0137 28 1 5.5897 7.5318 4.7444 29 1 5.6953 6.1312 2.7675 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6039 1.9820 0.8408 36 1 1.7533 1.9292 -0.9322 37 1 4.1505 1.9376 -1.8137 38 1 3.5779 0.2643 -1.6132 39 1 5.5702 -0.1898 -0.1503 40 1 6.1608 1.4513 -0.5052 41 1 5.6499 0.1401 -2.9540 42 1 6.4113 -0.5431 -4.8551 43 1 10.0945 -1.4261 -2.7992 44 1 5.0804 2.7568 0.5761 45 1 3.6085 3.5351 -0.0531 46 1 4.3825 4.7888 2.2032 47 1 3.5579 6.5304 6.2844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493287107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:04 Heat of formation + Delta-G solvation = -17.493585 kcal Electronic energy + Delta-G solvation = -28907.789643 eV Core-core repulsion = 24704.643941 eV Total energy + Delta-G solvation = -4203.145702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.45505 -40.62834 -40.07290 -38.39099 -37.60407 -36.00322 -35.66624 -34.09372 -33.65109 -32.53374 -31.23763 -29.98492 -28.84321 -26.57842 -25.45462 -23.77484 -23.51900 -22.66784 -21.79794 -21.17795 -20.99900 -20.46326 -20.11250 -17.88842 -17.35744 -17.27663 -16.92983 -16.65029 -16.50883 -16.19866 -16.01781 -15.78766 -15.62610 -15.23711 -15.09558 -14.97322 -14.71326 -14.51672 -14.40152 -14.16252 -14.13104 -13.93316 -13.70764 -13.65675 -13.48195 -13.26333 -13.05569 -12.76038 -12.60320 -12.40844 -12.38120 -12.07584 -11.96379 -11.68664 -11.48108 -11.28550 -11.03197 -10.29218 -10.25054 -10.17643 -9.92925 -9.35998 -9.13784 -8.37907 -5.97778 0.37838 0.82848 1.24198 1.32175 1.36893 1.45881 2.02286 2.10392 2.18226 2.25472 2.29629 2.63471 2.79749 3.08270 3.19009 3.30623 3.87630 3.98665 4.09081 4.16447 4.18819 4.24496 4.27318 4.35041 4.46719 4.52975 4.60477 4.65813 4.67955 4.73151 4.91485 4.95955 5.02579 5.06364 5.16450 5.28529 5.41163 5.47395 5.50721 5.54738 5.58063 5.58176 5.95603 6.11514 6.26945 6.30469 6.43206 6.64259 6.77605 6.93489 7.45275 7.45904 8.03375 8.79858 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002023 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.053355 B =13839.755165 C =15825.675129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.540 5.540 5 C 0.054 3.946 6 C 0.128 3.872 7 N -0.705 5.705 8 C 0.584 3.416 9 O -0.598 6.598 10 C -0.257 4.257 11 C 0.136 3.864 12 N -0.498 5.498 13 H 0.447 0.553 14 C 0.037 3.963 15 C 0.302 3.698 16 N -0.452 5.452 17 C -0.062 4.062 18 C 0.053 3.947 19 C 0.450 3.550 20 O -0.601 6.601 21 N -0.595 5.595 22 C -0.323 4.323 23 H 0.055 0.945 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.963 3.037 27 H -0.255 1.255 28 H -0.278 1.278 29 H -0.233 1.233 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.419 0.581 42 H 0.242 0.758 43 H 0.144 0.856 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.388 0.612 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -9.738 -33.287 34.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.265 5.265 5 C -0.074 4.074 6 C 0.003 3.997 7 N -0.358 5.358 8 C 0.374 3.626 9 O -0.479 6.479 10 C -0.266 4.266 11 C -0.009 4.009 12 N -0.094 5.094 13 H 0.289 0.711 14 C -0.074 4.074 15 C -0.012 4.012 16 N -0.130 5.130 17 C -0.091 4.091 18 C -0.078 4.078 19 C 0.238 3.762 20 O -0.485 6.485 21 N -0.238 5.238 22 C -0.453 4.453 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.783 3.217 27 H -0.179 1.179 28 H -0.203 1.203 29 H -0.156 1.156 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.257 0.743 42 H 0.258 0.742 43 H 0.162 0.838 44 H 0.129 0.871 45 H 0.102 0.898 46 H 0.223 0.777 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.050 -11.260 -32.606 34.863 hybrid contribution -0.135 1.499 -0.020 1.505 sum 4.914 -9.761 -32.626 34.408 Atomic orbital electron populations 1.21699 0.95263 1.02078 1.01438 1.21388 0.95646 0.95630 1.01872 1.22154 0.86079 0.98303 1.00152 1.61260 1.07023 1.28429 1.29763 1.22284 0.93241 1.02137 0.89695 1.21108 0.93496 0.98832 0.86300 1.45414 1.13361 1.64610 1.12423 1.17756 0.81197 0.76172 0.87510 1.90815 1.62987 1.57979 1.36164 1.19398 0.96799 1.16763 0.93690 1.23173 0.96859 0.94684 0.86146 1.41575 1.08544 1.46607 1.12633 0.71056 1.14843 0.85125 1.16283 0.91152 1.24436 0.92180 0.91926 0.92705 1.81371 1.11394 1.12196 1.08008 1.21139 0.96910 0.97411 0.93605 1.21876 1.02020 0.92345 0.91593 1.20957 0.83545 0.81841 0.89837 1.90542 1.42454 1.45735 1.69741 1.42066 1.49288 1.18852 1.13573 1.18982 1.31575 1.04503 0.90218 0.92697 1.26093 0.99115 0.99969 0.96327 1.69811 1.46930 1.27927 1.13092 0.85393 0.78917 0.78309 0.79086 1.17907 1.20310 1.15617 0.91595 0.95004 0.91228 0.89824 0.94180 0.93291 0.92652 0.91035 0.87576 0.93221 0.92910 0.74269 0.74183 0.83839 0.87099 0.89819 0.77673 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.91 71.98 0.71 -2.38 16 2 C -0.11 -2.51 5.98 30.59 0.18 -2.33 16 3 C 0.06 1.60 4.46 86.30 0.39 1.99 16 4 N -0.54 -14.21 4.10 -900.80 -3.70 -17.91 16 5 C 0.05 0.80 4.92 86.30 0.42 1.23 16 6 C 0.13 2.40 5.71 86.38 0.49 2.90 16 7 N -0.71 -8.31 5.55 -466.42 -2.59 -10.90 16 8 C 0.58 10.89 7.81 86.65 0.68 11.57 16 9 O -0.60 -18.61 16.92 -4.06 -0.07 -18.68 16 10 C -0.26 -2.81 6.13 -20.11 -0.12 -2.93 16 11 C 0.14 -0.08 11.43 84.27 0.96 0.89 16 12 N -0.50 0.04 6.02 -186.47 -1.12 -1.08 16 13 H 0.45 -3.12 8.96 -92.71 -0.83 -3.95 16 14 C 0.04 0.33 6.90 39.03 0.27 0.60 16 15 C 0.30 4.14 15.88 88.33 1.40 5.54 16 16 N -0.45 -8.77 18.54 19.01 0.35 -8.42 16 17 C -0.06 -0.83 10.59 22.62 0.24 -0.59 16 18 C 0.05 1.54 5.27 85.56 0.45 1.99 16 19 C 0.45 20.06 7.29 87.66 0.64 20.70 16 20 O -0.60 -32.71 14.12 -3.06 -0.04 -32.75 16 21 N -0.60 -28.09 5.09 -306.98 -1.56 -29.66 16 22 C -0.32 -19.05 10.16 84.04 0.85 -18.20 16 23 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 24 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 25 N -0.94 -57.08 13.96 21.66 0.30 -56.78 16 26 Si 0.96 39.23 27.74 68.60 1.90 41.14 16 27 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 28 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 29 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.38 6.91 -2.38 -0.02 1.37 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.79 5.85 -2.38 -0.01 1.78 16 36 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 37 H 0.07 0.69 8.00 -2.39 -0.02 0.67 16 38 H 0.11 1.09 6.58 -2.39 -0.02 1.07 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.19 6.95 -2.39 -0.02 1.17 16 41 H 0.42 0.57 7.38 -92.71 -0.68 -0.12 16 42 H 0.24 -2.80 7.44 -2.91 -0.02 -2.82 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.11 2.85 6.71 -2.39 -0.02 2.83 16 45 H 0.08 1.91 8.12 -2.38 -0.02 1.89 16 46 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 47 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -95.98 401.83 0.46 -95.52 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -1.06 Total: 19.03 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 8.04 Total: 20.50 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -8.31 Total: -124.74 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.11 Total: -51.43 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.14 kcal Total: -95.98 0.46 -95.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493287107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.024 kcal (2) G-P(sol) polarization free energy of solvation -95.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds