Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50693 * 109.47338 * 2 1 4 4 N 1.33325 * 126.10466 * 270.02545 * 3 2 1 5 5 C 1.30859 * 109.68553 * 179.97438 * 4 3 2 6 6 N 1.34500 * 109.16189 * 359.72077 * 5 4 3 7 7 H 0.96998 * 126.47536 * 180.29465 * 6 5 4 8 8 C 1.36657 * 126.11073 * 90.00408 * 3 2 1 9 9 C 1.46772 * 126.84443 * 0.02562 * 8 3 2 10 10 O 1.21682 * 119.99404 * 0.02562 * 9 8 3 11 11 N 1.34768 * 119.99920 * 180.02562 * 9 8 3 12 12 C 1.49046 * 127.52700 * 1.21517 * 11 9 8 13 13 C 1.56019 * 105.22062 * 181.94734 * 12 11 9 14 14 H 1.08992 * 116.91173 * 158.55392 * 13 12 11 15 15 C 1.57088 * 99.59583 * 32.13385 * 13 12 11 16 16 C 1.49284 * 126.92561 * 180.02562 * 11 9 8 17 17 H 1.09000 * 116.11944 * 16.85675 * 16 11 9 18 18 C 1.56011 * 104.90127 * 247.09273 * 16 11 9 19 19 N 1.48287 * 105.06773 * 288.60818 * 18 16 11 20 20 C 1.46896 * 111.00201 * 122.54331 * 19 18 16 21 21 C 1.50697 * 109.47308 * 183.76225 * 20 19 18 22 22 O 1.21287 * 120.00231 * 359.97438 * 21 20 19 23 23 N 1.34784 * 119.99915 * 180.02562 * 21 20 19 24 24 C 1.37094 * 119.99891 * 179.97438 * 23 21 20 25 25 H 1.08000 * 120.00084 * 0.02562 * 24 23 21 26 26 C 1.38954 * 120.00123 * 180.02562 * 24 23 21 27 27 N 1.31410 * 119.99498 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00174 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46993 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47350 * 59.99490 * 28 26 24 31 31 H 1.48503 * 109.46965 * 299.99532 * 28 26 24 32 32 H 1.08999 * 109.47165 * 59.99867 * 1 2 3 33 33 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47347 * 300.00387 * 1 2 3 35 35 H 1.09009 * 109.46610 * 239.99707 * 2 1 3 36 36 H 1.08999 * 109.47165 * 120.00133 * 2 1 3 37 37 H 1.07994 * 125.41721 * 180.02562 * 5 4 3 38 38 H 1.09000 * 110.82915 * 62.70959 * 12 11 9 39 39 H 1.09010 * 109.69808 * 300.60165 * 12 11 9 40 40 H 1.09005 * 112.35692 * 64.33982 * 15 13 12 41 41 H 1.09005 * 112.35579 * 191.65637 * 15 13 12 42 42 H 1.09002 * 110.32189 * 169.71668 * 18 16 11 43 43 H 1.08991 * 110.32248 * 47.50689 * 18 16 11 44 44 H 1.09003 * 109.47015 * 63.75643 * 20 19 18 45 45 H 1.09005 * 109.47219 * 303.76306 * 20 19 18 46 46 H 0.97003 * 119.99940 * 0.02562 * 23 21 20 47 47 H 0.97005 * 120.00585 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2938 2.1616 -1.0772 5 6 2.7119 3.3451 -0.7073 6 7 2.7277 3.4078 0.6361 7 1 2.9913 4.1702 1.1748 8 6 2.3009 2.1800 1.1040 9 6 2.1580 1.7742 2.5073 10 8 1.7636 0.6558 2.7799 11 7 2.4637 2.6402 3.4936 12 6 2.9335 4.0476 3.3528 13 6 3.1771 4.5460 4.8110 14 1 3.8474 5.3963 4.9363 15 6 3.6246 3.1959 5.4778 16 6 2.3773 2.3926 4.9632 17 1 2.3106 1.3490 5.2709 18 6 1.2362 3.3324 5.4620 19 7 1.8000 4.7014 5.3780 20 6 0.9717 5.5602 4.5211 21 6 1.6231 6.9123 4.3853 22 8 2.6738 7.1385 4.9475 23 7 1.0376 7.8706 3.6400 24 6 1.6300 9.1008 3.5169 25 1 2.5660 9.3019 4.0168 26 6 1.0262 10.0890 2.7490 27 7 -0.1129 9.8444 2.1412 28 14 1.8336 11.7650 2.5807 29 1 0.9953 12.6337 1.7160 30 1 3.1782 11.6076 1.9703 31 1 1.9690 12.3862 3.9228 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8932 -0.5139 -0.8901 36 1 1.8933 -0.5138 0.8900 37 1 2.9941 4.1459 -1.3746 38 1 2.1769 4.6618 2.8645 39 1 3.8638 4.0694 2.7851 40 1 4.5599 2.8190 5.0638 41 1 3.6576 3.2616 6.5654 42 1 0.9728 3.0941 6.4925 43 1 0.3626 3.2425 4.8166 44 1 -0.0156 5.6757 4.9684 45 1 0.8731 5.1038 3.5361 46 1 0.1968 7.6901 3.1913 47 1 -0.5321 8.9739 2.2283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494683063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = 40.642728 kcal Electronic energy + Delta-G solvation = -31833.961033 eV Core-core repulsion = 27633.336311 eV Total energy + Delta-G solvation = -4200.624722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50264 -41.25685 -38.77037 -38.02250 -34.82852 -34.45327 -33.69671 -32.39006 -31.40945 -30.86188 -29.99718 -29.12432 -26.68110 -25.58873 -24.31002 -23.82809 -22.84984 -22.12588 -20.85421 -20.20229 -19.76489 -19.33631 -18.10763 -17.83341 -17.00320 -16.76884 -16.46151 -15.79737 -15.50022 -15.34243 -15.01763 -14.60012 -14.45079 -14.10653 -14.03592 -13.84097 -13.55416 -13.52635 -13.13621 -12.98392 -12.82573 -12.46104 -12.25780 -12.01796 -11.66715 -11.64785 -11.55113 -11.47098 -11.36902 -11.12676 -11.09271 -11.03675 -10.59403 -10.30613 -10.20548 -10.00088 -9.98860 -9.68061 -9.07554 -8.67001 -8.59590 -8.24516 -8.16366 -6.89360 -4.04224 1.10578 2.44704 2.65338 2.80774 3.11625 3.18735 3.25791 3.45423 3.62509 3.70234 4.07383 4.13938 4.25077 4.28143 4.43764 4.46321 4.73529 4.78648 4.81777 4.89480 4.95730 4.98301 5.11093 5.21631 5.34182 5.39027 5.44033 5.50053 5.54119 5.58887 5.60224 5.60535 5.68245 5.77397 5.82118 5.90290 5.98673 6.11333 6.14746 6.19004 6.39780 6.72779 6.89588 6.97960 7.18588 7.64039 7.71223 7.88032 7.92482 8.42682 8.62648 9.30471 9.68634 10.53146 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.003465 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.031559 B = 8079.706848 C = 9731.663955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C 0.101 3.899 4 N -0.498 5.498 5 C 0.221 3.779 6 N -0.556 5.556 7 H 0.424 0.576 8 C -0.092 4.092 9 C 0.615 3.385 10 O -0.525 6.525 11 N -0.622 5.622 12 C 0.045 3.955 13 C 0.076 3.924 14 H 0.159 0.841 15 C -0.138 4.138 16 C 0.113 3.887 17 H 0.129 0.871 18 C 0.024 3.976 19 N -0.490 5.490 20 C 0.029 3.971 21 C 0.442 3.558 22 O -0.574 6.574 23 N -0.571 5.571 24 C -0.385 4.385 25 H 0.101 0.899 26 C -0.007 4.007 27 N -0.896 5.896 28 Si 1.090 2.910 29 H -0.278 1.278 30 H -0.283 1.283 31 H -0.283 1.283 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.217 0.783 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.375 0.625 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -15.339 -0.701 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.034 4.034 4 N -0.218 5.218 5 C -0.063 4.063 6 N -0.164 5.164 7 H 0.267 0.733 8 C -0.208 4.208 9 C 0.405 3.595 10 O -0.402 6.402 11 N -0.358 5.358 12 C -0.078 4.078 13 C -0.032 4.032 14 H 0.176 0.824 15 C -0.176 4.176 16 C 0.010 3.990 17 H 0.147 0.853 18 C -0.105 4.105 19 N -0.214 5.214 20 C -0.102 4.102 21 C 0.228 3.772 22 O -0.458 6.458 23 N -0.209 5.209 24 C -0.514 4.514 25 H 0.118 0.882 26 C -0.210 4.210 27 N -0.534 5.534 28 Si 0.916 3.084 29 H -0.203 1.203 30 H -0.210 1.210 31 H -0.209 1.209 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.444 -14.324 -1.240 15.049 hybrid contribution -0.298 -0.960 0.481 1.115 sum 4.146 -15.285 -0.760 15.855 Atomic orbital electron populations 1.21610 0.94365 1.01701 1.01847 1.20041 0.96231 0.88726 1.03563 1.21050 0.98781 0.97020 0.86571 1.70148 1.18549 1.02737 1.30339 1.25231 1.00956 0.97862 0.82264 1.43896 1.50075 1.13366 1.09063 0.73309 1.20845 1.16791 0.88360 0.94788 1.16446 0.77207 0.83881 0.81980 1.90808 1.47310 1.19368 1.82664 1.49492 1.66485 1.13139 1.06654 1.23758 0.99640 0.82076 1.02358 1.24928 0.92460 0.98057 0.87732 0.82351 1.24034 0.96955 0.94583 1.02074 1.24052 0.96155 1.00295 0.78494 0.85320 1.23778 0.96460 0.88168 1.02091 1.64745 1.01538 1.08273 1.46828 1.22236 0.98060 0.93964 0.95967 1.19534 0.87621 0.85651 0.84425 1.90469 1.24030 1.81303 1.49963 1.41959 1.22353 1.12351 1.44201 1.20530 1.09068 0.89122 1.32684 0.88163 1.26535 0.96143 1.04623 0.93677 1.70918 1.16505 1.24582 1.41443 0.83144 0.75088 0.73250 0.76946 1.20337 1.20963 1.20894 0.92807 0.92181 0.92711 0.90626 0.88942 0.76705 0.90059 0.91158 0.89905 0.88216 0.88790 0.92105 0.89055 0.93351 0.79216 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.15 0.37 -1.19 16 2 C -0.05 -0.58 5.93 -27.89 -0.17 -0.74 16 3 C 0.10 1.40 6.40 -82.52 -0.53 0.87 16 4 N -0.50 -6.78 11.20 -10.65 -0.12 -6.89 16 5 C 0.22 2.44 13.01 -90.57 -1.18 1.27 16 6 N -0.56 -6.39 5.78 -10.79 -0.06 -6.45 16 7 H 0.42 4.38 5.33 -40.82 -0.22 4.16 16 8 C -0.09 -1.25 6.93 -82.14 -0.57 -1.82 16 9 C 0.62 8.72 7.88 -12.82 -0.10 8.61 16 10 O -0.52 -8.32 15.16 5.20 0.08 -8.25 16 11 N -0.62 -7.78 3.01 -157.35 -0.47 -8.26 16 12 C 0.05 0.56 4.22 -1.02 0.00 0.56 16 13 C 0.08 1.03 4.17 -62.29 -0.26 0.77 16 14 H 0.16 2.52 6.39 -51.93 -0.33 2.19 16 15 C -0.14 -1.46 6.79 -22.32 -0.15 -1.62 16 16 C 0.11 1.26 5.18 -62.59 -0.32 0.94 16 17 H 0.13 1.34 8.06 -51.93 -0.42 0.92 16 18 C 0.02 0.29 6.30 -1.45 -0.01 0.28 16 19 N -0.49 -7.15 5.16 -218.16 -1.13 -8.28 16 20 C 0.03 0.47 4.65 -4.98 -0.02 0.45 16 21 C 0.44 9.30 7.44 -10.98 -0.08 9.22 16 22 O -0.57 -13.66 13.60 5.55 0.08 -13.59 16 23 N -0.57 -13.15 5.28 -10.96 -0.06 -13.21 16 24 C -0.38 -10.03 9.68 -14.93 -0.14 -10.17 16 25 H 0.10 2.76 7.16 -52.49 -0.38 2.39 16 26 C -0.01 -0.17 5.50 -17.47 -0.10 -0.27 16 27 N -0.90 -23.88 13.68 55.50 0.76 -23.12 16 28 Si 1.09 22.91 29.92 -169.99 -5.09 17.83 16 29 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 30 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 31 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 36 H 0.09 1.19 6.48 -51.93 -0.34 0.85 16 37 H 0.22 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.08 1.10 4.60 -51.93 -0.24 0.86 16 39 H 0.07 0.77 7.15 -51.92 -0.37 0.40 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.05 0.73 5.65 -51.93 -0.29 0.44 16 46 H 0.37 8.12 6.73 -40.82 -0.27 7.85 16 47 H 0.26 6.70 6.78 -40.82 -0.28 6.42 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -32.33 373.23 -9.79 -42.11 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.13 Total: 15.34 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.27 Total: 7.15 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -1.08 Total: -66.22 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.15 Total: -21.83 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.09 Total: 17.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.33 -9.79 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.754 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds