Wall clock time and date at job start Wed Apr 1 2020 04:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50693 * 109.47338 * 2 1 4 4 N 1.33325 * 126.10466 * 270.02545 * 3 2 1 5 5 C 1.30859 * 109.68553 * 179.97438 * 4 3 2 6 6 N 1.34500 * 109.16189 * 359.72077 * 5 4 3 7 7 H 0.96998 * 126.47536 * 180.29465 * 6 5 4 8 8 C 1.36657 * 126.11073 * 90.00408 * 3 2 1 9 9 C 1.46772 * 126.84443 * 0.02562 * 8 3 2 10 10 O 1.21682 * 119.99404 * 0.02562 * 9 8 3 11 11 N 1.34768 * 119.99920 * 180.02562 * 9 8 3 12 12 C 1.49046 * 127.52700 * 1.21517 * 11 9 8 13 13 C 1.56019 * 105.22062 * 181.94734 * 12 11 9 14 14 H 1.08992 * 116.91173 * 158.55392 * 13 12 11 15 15 C 1.57088 * 99.59583 * 32.13385 * 13 12 11 16 16 C 1.49284 * 126.92561 * 180.02562 * 11 9 8 17 17 H 1.09000 * 116.11944 * 16.85675 * 16 11 9 18 18 C 1.56011 * 104.90127 * 247.09273 * 16 11 9 19 19 N 1.48287 * 105.06773 * 288.60818 * 18 16 11 20 20 C 1.46896 * 111.00201 * 122.54331 * 19 18 16 21 21 C 1.50697 * 109.47308 * 183.76225 * 20 19 18 22 22 O 1.21287 * 120.00231 * 359.97438 * 21 20 19 23 23 N 1.34784 * 119.99915 * 180.02562 * 21 20 19 24 24 C 1.37094 * 119.99891 * 179.97438 * 23 21 20 25 25 H 1.08000 * 120.00084 * 0.02562 * 24 23 21 26 26 C 1.38954 * 120.00123 * 180.02562 * 24 23 21 27 27 N 1.31410 * 119.99498 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00174 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46993 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47350 * 59.99490 * 28 26 24 31 31 H 1.48503 * 109.46965 * 299.99532 * 28 26 24 32 32 H 1.08999 * 109.47165 * 59.99867 * 1 2 3 33 33 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47347 * 300.00387 * 1 2 3 35 35 H 1.09009 * 109.46610 * 239.99707 * 2 1 3 36 36 H 1.08999 * 109.47165 * 120.00133 * 2 1 3 37 37 H 1.07994 * 125.41721 * 180.02562 * 5 4 3 38 38 H 1.09000 * 110.82915 * 62.70959 * 12 11 9 39 39 H 1.09010 * 109.69808 * 300.60165 * 12 11 9 40 40 H 1.09005 * 112.35692 * 64.33982 * 15 13 12 41 41 H 1.09005 * 112.35579 * 191.65637 * 15 13 12 42 42 H 1.09002 * 110.32189 * 169.71668 * 18 16 11 43 43 H 1.08991 * 110.32248 * 47.50689 * 18 16 11 44 44 H 1.09003 * 109.47015 * 63.75643 * 20 19 18 45 45 H 1.09005 * 109.47219 * 303.76306 * 20 19 18 46 46 H 0.97003 * 119.99940 * 0.02562 * 23 21 20 47 47 H 0.97005 * 120.00585 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2938 2.1616 -1.0772 5 6 2.7119 3.3451 -0.7073 6 7 2.7277 3.4078 0.6361 7 1 2.9913 4.1702 1.1748 8 6 2.3009 2.1800 1.1040 9 6 2.1580 1.7742 2.5073 10 8 1.7636 0.6558 2.7799 11 7 2.4637 2.6402 3.4936 12 6 2.9335 4.0476 3.3528 13 6 3.1771 4.5460 4.8110 14 1 3.8474 5.3963 4.9363 15 6 3.6246 3.1959 5.4778 16 6 2.3773 2.3926 4.9632 17 1 2.3106 1.3490 5.2709 18 6 1.2362 3.3324 5.4620 19 7 1.8000 4.7014 5.3780 20 6 0.9717 5.5602 4.5211 21 6 1.6231 6.9123 4.3853 22 8 2.6738 7.1385 4.9475 23 7 1.0376 7.8706 3.6400 24 6 1.6300 9.1008 3.5169 25 1 2.5660 9.3019 4.0168 26 6 1.0262 10.0890 2.7490 27 7 -0.1129 9.8444 2.1412 28 14 1.8336 11.7650 2.5807 29 1 0.9953 12.6337 1.7160 30 1 3.1782 11.6076 1.9703 31 1 1.9690 12.3862 3.9228 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8932 -0.5139 -0.8901 36 1 1.8933 -0.5138 0.8900 37 1 2.9941 4.1459 -1.3746 38 1 2.1769 4.6618 2.8645 39 1 3.8638 4.0694 2.7851 40 1 4.5599 2.8190 5.0638 41 1 3.6576 3.2616 6.5654 42 1 0.9728 3.0941 6.4925 43 1 0.3626 3.2425 4.8166 44 1 -0.0156 5.6757 4.9684 45 1 0.8731 5.1038 3.5361 46 1 0.1968 7.6901 3.1913 47 1 -0.5321 8.9739 2.2283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494683063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:12 Heat of formation + Delta-G solvation = 18.220016 kcal Electronic energy + Delta-G solvation = -31834.933355 eV Core-core repulsion = 27633.336311 eV Total energy + Delta-G solvation = -4201.597044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.46353 -42.32128 -40.21297 -39.39824 -36.44482 -35.67686 -34.82243 -33.46462 -33.11030 -32.04848 -31.01137 -30.09571 -28.09564 -26.61520 -25.96585 -24.89635 -23.80875 -23.07266 -22.08627 -21.42109 -21.02616 -20.36087 -19.93369 -18.88241 -18.32434 -17.83514 -17.69634 -17.00510 -16.78107 -16.54840 -16.13433 -15.98544 -15.67287 -15.47376 -15.31042 -14.97923 -14.87621 -14.46777 -14.30177 -14.22867 -13.94786 -13.44204 -13.37080 -13.30775 -13.07008 -13.00486 -12.67253 -12.61315 -12.47337 -12.43442 -12.16479 -12.05081 -11.93404 -11.87291 -11.62869 -11.48592 -11.16726 -11.01844 -10.32480 -10.12724 -10.10579 -9.64054 -9.35882 -8.91482 -6.06587 0.11331 1.44839 1.51619 1.55864 1.69476 1.82202 1.88951 1.96778 2.08428 2.35510 2.59384 3.03055 3.10596 3.16561 3.28756 3.36836 3.49235 3.60906 3.77025 3.84044 3.90250 3.95482 4.07404 4.12334 4.21650 4.32102 4.38565 4.41832 4.47019 4.54093 4.59356 4.67354 4.67727 4.80173 4.88135 5.00776 5.02256 5.07141 5.17695 5.24886 5.43687 5.56820 5.62717 5.79616 5.95172 6.10359 6.15924 6.54820 6.73143 6.74175 6.84414 7.42527 7.88940 8.55150 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.003465 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.031559 B = 8079.706848 C = 9731.663955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C 0.089 3.911 4 N -0.524 5.524 5 C 0.232 3.768 6 N -0.553 5.553 7 H 0.429 0.571 8 C -0.112 4.112 9 C 0.613 3.387 10 O -0.547 6.547 11 N -0.619 5.619 12 C 0.054 3.946 13 C 0.066 3.934 14 H 0.133 0.867 15 C -0.121 4.121 16 C 0.115 3.885 17 H 0.143 0.857 18 C 0.028 3.972 19 N -0.504 5.504 20 C 0.042 3.958 21 C 0.450 3.550 22 O -0.600 6.600 23 N -0.585 5.585 24 C -0.404 4.404 25 H 0.079 0.921 26 C -0.040 4.040 27 N -0.918 5.918 28 Si 1.130 2.870 29 H -0.278 1.278 30 H -0.269 1.269 31 H -0.275 1.275 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.381 0.619 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -16.004 -0.693 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.046 4.046 4 N -0.244 5.244 5 C -0.052 4.052 6 N -0.160 5.160 7 H 0.272 0.728 8 C -0.227 4.227 9 C 0.403 3.597 10 O -0.425 6.425 11 N -0.353 5.353 12 C -0.070 4.070 13 C -0.042 4.042 14 H 0.151 0.849 15 C -0.159 4.159 16 C 0.013 3.987 17 H 0.160 0.840 18 C -0.100 4.100 19 N -0.228 5.228 20 C -0.089 4.089 21 C 0.237 3.763 22 O -0.484 6.484 23 N -0.224 5.224 24 C -0.533 4.533 25 H 0.097 0.903 26 C -0.239 4.239 27 N -0.557 5.557 28 Si 0.951 3.049 29 H -0.203 1.203 30 H -0.194 1.194 31 H -0.200 1.200 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.270 0.730 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.214 0.786 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.910 -15.008 -1.205 15.836 hybrid contribution -0.396 -0.815 0.520 1.045 sum 4.514 -15.823 -0.686 16.468 Atomic orbital electron populations 1.21549 0.93816 1.02645 1.00790 1.20060 0.96645 0.88219 1.03572 1.21360 0.98696 0.97696 0.86877 1.70160 1.19849 1.03822 1.30600 1.26028 0.98860 0.97931 0.82428 1.43876 1.49884 1.12937 1.09334 0.72755 1.20848 1.17984 0.89232 0.94654 1.16532 0.76987 0.83748 0.82388 1.90789 1.48452 1.20222 1.83047 1.49483 1.65917 1.12803 1.07091 1.23621 0.99857 0.81786 1.01742 1.24773 0.91785 0.98694 0.88946 0.84908 1.23980 0.97143 0.92170 1.02601 1.24195 0.96037 1.00919 0.77573 0.83970 1.23820 0.96305 0.86657 1.03213 1.64766 1.01896 1.09619 1.46514 1.22076 0.98153 0.91339 0.97356 1.20385 0.86835 0.86775 0.82295 1.90464 1.25290 1.82248 1.50448 1.41998 1.22862 1.12150 1.45350 1.20501 1.08819 0.90791 1.33225 0.90311 1.27723 0.95974 1.07267 0.92934 1.70988 1.17346 1.24725 1.42658 0.82657 0.74987 0.69956 0.77342 1.20274 1.19410 1.20032 0.93040 0.90276 0.94407 0.89650 0.89762 0.73028 0.91274 0.89786 0.88672 0.87055 0.86821 0.92639 0.87935 0.91990 0.78551 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.89 71.98 0.71 -2.17 16 2 C -0.05 -1.12 5.93 29.84 0.18 -0.94 16 3 C 0.09 2.40 6.40 41.96 0.27 2.67 16 4 N -0.52 -13.67 11.20 -187.60 -2.10 -15.77 16 5 C 0.23 4.72 13.01 180.33 2.35 7.06 16 6 N -0.55 -11.99 5.78 -188.04 -1.09 -13.08 16 7 H 0.43 8.32 5.33 -92.71 -0.49 7.82 16 8 C -0.11 -2.94 6.93 40.01 0.28 -2.67 16 9 C 0.61 16.79 7.88 86.48 0.68 17.47 16 10 O -0.55 -16.95 15.16 -4.29 -0.07 -17.01 16 11 N -0.62 -14.51 3.01 -769.95 -2.32 -16.83 16 12 C 0.05 1.26 4.22 86.93 0.37 1.63 16 13 C 0.07 1.71 4.17 46.84 0.20 1.90 16 14 H 0.13 4.22 6.39 -2.39 -0.02 4.21 16 15 C -0.12 -2.28 6.79 33.45 0.23 -2.06 16 16 C 0.12 2.31 5.18 46.91 0.24 2.56 16 17 H 0.14 2.57 8.06 -2.39 -0.02 2.55 16 18 C 0.03 0.61 6.30 87.08 0.55 1.16 16 19 N -0.50 -13.98 5.16 -844.11 -4.35 -18.33 16 20 C 0.04 1.32 4.65 85.56 0.40 1.72 16 21 C 0.45 18.93 7.44 87.65 0.65 19.58 16 22 O -0.60 -28.80 13.60 -3.05 -0.04 -28.84 16 23 N -0.58 -27.16 5.28 -306.98 -1.62 -28.79 16 24 C -0.40 -21.32 9.68 84.04 0.81 -20.51 16 25 H 0.08 4.43 7.16 -2.91 -0.02 4.41 16 26 C -0.04 -2.07 5.50 84.93 0.47 -1.61 16 27 N -0.92 -49.01 13.68 21.66 0.30 -48.71 16 28 Si 1.13 45.80 29.92 68.60 2.05 47.86 16 29 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 30 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 31 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.15 6.48 -2.39 -0.02 2.13 16 37 H 0.25 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.07 1.80 4.60 -2.39 -0.01 1.79 16 39 H 0.08 1.73 7.15 -2.38 -0.02 1.72 16 40 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 1.29 7.62 -2.39 -0.02 1.27 16 44 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.06 1.81 5.65 -2.38 -0.01 1.79 16 46 H 0.38 16.65 6.73 -92.71 -0.62 16.03 16 47 H 0.26 13.35 6.78 -92.70 -0.63 12.73 16 Total: -1.00 -69.79 373.23 -0.80 -70.59 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: 0.07 Total: 43.11 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 8.37 Total: 25.80 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -11.19 Total: -141.51 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.11 Total: -45.86 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.05 Total: 47.86 kcal Total: -69.79 -0.80 -70.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.815 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds