Wall clock time and date at job start Wed Apr 1 2020 04:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47696 * 2 1 4 4 N 1.32156 * 120.53798 * 264.41990 * 3 2 1 5 5 C 1.31860 * 120.96653 * 180.33141 * 4 3 2 6 6 N 1.31882 * 122.09508 * 359.65297 * 5 4 3 7 7 C 1.32133 * 120.96837 * 0.02562 * 6 5 4 8 8 C 1.39926 * 120.53721 * 84.12626 * 3 2 1 9 9 C 1.47835 * 120.93699 * 359.97438 * 8 3 2 10 10 O 1.21553 * 120.00223 * 46.78519 * 9 8 3 11 11 N 1.34777 * 119.99829 * 226.78177 * 9 8 3 12 12 C 1.46503 * 120.00092 * 5.29900 * 11 9 8 13 13 C 1.46497 * 120.00173 * 185.29224 * 11 9 8 14 14 C 1.53516 * 114.17083 * 120.00239 * 13 11 9 15 15 N 1.47480 * 87.93232 * 87.81548 * 14 13 11 16 16 C 1.46899 * 111.00135 * 138.70784 * 15 14 13 17 17 C 1.50700 * 109.47296 * 170.00109 * 16 15 14 18 18 O 1.21290 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 179.72284 * 17 16 15 20 20 C 1.37095 * 119.99809 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00126 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99724 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99945 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47245 * 59.99847 * 24 22 20 26 26 H 1.48502 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46858 * 299.99469 * 24 22 20 28 28 C 1.47474 * 87.83616 * 27.00857 * 15 14 13 29 29 H 1.09006 * 109.46734 * 299.99978 * 1 2 3 30 30 H 1.08999 * 109.47027 * 59.99490 * 1 2 3 31 31 H 1.08993 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46788 * 239.99761 * 2 1 3 33 33 H 1.08999 * 109.47027 * 120.00510 * 2 1 3 34 34 H 1.08000 * 118.94910 * 179.68041 * 5 4 3 35 35 H 1.07997 * 120.54064 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47282 * 266.31488 * 12 11 9 37 37 H 1.09002 * 109.47109 * 26.30650 * 12 11 9 38 38 H 1.08996 * 109.47541 * 146.30920 * 12 11 9 39 39 H 1.08999 * 113.25596 * 347.05905 * 13 11 9 40 40 H 1.09004 * 113.47242 * 333.04836 * 14 13 11 41 41 H 1.08999 * 113.53685 * 202.59097 * 14 13 11 42 42 H 1.08997 * 109.47053 * 49.99810 * 16 15 14 43 43 H 1.09000 * 109.46874 * 290.00293 * 16 15 14 44 44 H 0.97003 * 119.99741 * 359.97438 * 19 17 16 45 45 H 0.97000 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.09008 * 113.47427 * 87.75762 * 28 15 14 47 47 H 1.09002 * 113.47976 * 218.22135 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3607 2.0169 -1.1329 5 6 2.8074 3.2575 -1.1420 6 7 2.9419 3.9621 -0.0353 7 6 2.6312 3.4464 1.1409 8 6 2.1532 2.1321 1.1989 9 6 1.7920 1.5111 2.4909 10 8 2.1847 0.3922 2.7583 11 7 1.0272 2.1854 3.3722 12 6 0.4579 3.4842 3.0046 13 6 0.7652 1.6196 4.6979 14 6 1.2541 2.4930 5.8619 15 7 -0.0476 3.1850 5.8193 16 6 -0.5538 3.4384 7.1748 17 6 -1.7489 4.3535 7.1018 18 8 -2.1402 4.7555 6.0264 19 7 -2.3861 4.7211 8.2311 20 6 -3.4737 5.5532 8.1647 21 1 -3.8195 5.9144 7.2075 22 6 -4.1302 5.9326 9.3290 23 7 -3.7090 5.4935 10.4938 24 14 -5.6116 7.0670 9.2385 25 1 -6.6736 6.4299 8.4191 26 1 -6.1267 7.3187 10.6084 27 1 -5.2118 8.3546 8.6163 28 6 -0.6243 1.9472 5.2623 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0711 3.7112 -2.0860 35 1 2.7444 4.0295 2.0429 36 1 1.1234 4.2804 3.3383 37 1 0.3426 3.5371 1.9220 38 1 -0.5160 3.6017 3.4798 39 1 1.0442 0.5692 4.7803 40 1 2.0956 3.1343 5.5999 41 1 1.4197 1.9361 6.7842 42 1 0.2274 3.9079 7.7725 43 1 -0.8462 2.4948 7.6356 44 1 -2.0757 4.3964 9.0908 45 1 -4.1672 5.7587 11.3066 46 1 -0.9604 1.2437 6.0242 47 1 -1.3748 2.1259 4.4923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499792901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:47 Heat of formation + Delta-G solvation = 32.313613 kcal Electronic energy + Delta-G solvation = -30453.433524 eV Core-core repulsion = 26252.447624 eV Total energy + Delta-G solvation = -4200.985900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80853 -40.75127 -39.06644 -37.77474 -35.64594 -34.96652 -33.92337 -33.25821 -31.47469 -31.23153 -29.94878 -27.27579 -26.25382 -25.95708 -25.39184 -25.07822 -23.53946 -22.32319 -21.26529 -19.34736 -18.98733 -18.32671 -17.96979 -17.50340 -17.25409 -16.70507 -16.05854 -15.67740 -15.48797 -15.12149 -14.89703 -14.73887 -14.59728 -14.35328 -14.25190 -13.79975 -13.73754 -13.32867 -13.15353 -13.04314 -12.93699 -12.60199 -12.13245 -12.08387 -11.98695 -11.92876 -11.63524 -11.51977 -11.42955 -11.11696 -11.01911 -10.96206 -10.81807 -10.46916 -10.24064 -10.11502 -9.87403 -9.65948 -9.52084 -8.90070 -8.83972 -8.25855 -7.99306 -6.44441 -3.85408 0.16163 0.63389 2.28505 2.59267 3.17542 3.23570 3.27604 3.32863 3.58851 3.72177 3.86072 3.91322 3.95542 4.09291 4.19473 4.34856 4.51568 4.74067 4.83287 4.86921 4.93508 4.96319 5.05180 5.12587 5.14952 5.29318 5.32716 5.38291 5.46438 5.51589 5.57917 5.62270 5.66727 5.67664 5.72809 5.80818 5.84571 5.98145 5.99154 6.21069 6.34336 6.41829 6.50249 6.99875 7.12679 7.52054 7.62450 7.77143 8.02642 8.58702 9.15331 9.51487 10.03316 10.73259 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.547109 B =13142.421768 C =13566.768223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C 0.231 3.769 4 N -0.522 5.522 5 C 0.313 3.687 6 N -0.524 5.524 7 C 0.188 3.812 8 C -0.235 4.235 9 C 0.575 3.425 10 O -0.529 6.529 11 N -0.577 5.577 12 C 0.076 3.924 13 C 0.114 3.886 14 C -0.017 4.017 15 N -0.438 5.438 16 C 0.007 3.993 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.005 4.005 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.201 0.799 35 H 0.176 0.824 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.391 0.609 45 H 0.272 0.728 46 H 0.082 0.918 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.813 -9.915 -15.997 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C 0.084 3.916 4 N -0.236 5.236 5 C 0.026 3.974 6 N -0.237 5.237 7 C 0.021 3.979 8 C -0.242 4.242 9 C 0.361 3.639 10 O -0.407 6.407 11 N -0.308 5.308 12 C -0.067 4.067 13 C 0.010 3.990 14 C -0.147 4.147 15 N -0.160 5.160 16 C -0.125 4.125 17 C 0.232 3.768 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.218 0.782 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.224 0.776 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.814 -9.075 -17.583 23.573 hybrid contribution -0.716 -0.336 2.041 2.189 sum 12.098 -9.411 -15.541 21.828 Atomic orbital electron populations 1.21665 0.93214 1.02901 1.02157 1.20882 0.97115 0.89493 1.05802 1.21871 0.86938 0.96268 0.86533 1.68387 1.13614 1.12132 1.29419 1.25227 0.88538 0.86422 0.97242 1.68496 1.17966 1.38194 0.99066 1.23602 0.87250 0.90238 0.96776 1.21524 1.08677 0.97820 0.96183 1.17809 0.78322 0.84971 0.82787 1.90743 1.54280 1.18292 1.77337 1.47314 1.48978 1.21156 1.13337 1.22043 1.01947 0.82974 0.99697 1.22104 0.97058 0.98360 0.81520 1.24349 0.95776 0.96752 0.97841 1.68863 1.02020 1.27038 1.18054 1.22510 0.98624 0.99898 0.91424 1.19634 0.86047 0.85982 0.85184 1.90506 1.68061 1.59029 1.28472 1.41874 1.27616 1.43547 1.07272 1.19628 1.05040 1.23275 0.94904 0.88026 1.25254 0.99502 0.98522 0.94658 1.69602 1.41643 1.45313 0.97837 0.85927 0.80949 0.80274 0.77131 1.19926 1.20974 1.19893 1.24282 0.96868 0.92086 1.00206 0.92617 0.92308 0.91118 0.89205 0.87160 0.78225 0.80737 0.91755 0.92294 0.87915 0.86576 0.89438 0.90194 0.89346 0.92102 0.77558 0.91823 0.89997 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.90 37.16 0.37 -0.84 16 2 C -0.10 -0.89 5.78 -27.88 -0.16 -1.05 16 3 C 0.23 2.44 6.11 -81.82 -0.50 1.94 16 4 N -0.52 -5.37 10.36 -10.48 -0.11 -5.48 16 5 C 0.31 2.81 12.27 -92.02 -1.13 1.68 16 6 N -0.52 -5.26 10.42 -14.24 -0.15 -5.41 16 7 C 0.19 1.83 9.20 -16.77 -0.15 1.68 16 8 C -0.23 -2.50 4.75 -104.69 -0.50 -3.00 16 9 C 0.57 6.67 6.69 -12.33 -0.08 6.59 16 10 O -0.53 -7.26 14.35 5.32 0.08 -7.18 16 11 N -0.58 -6.36 3.11 -174.74 -0.54 -6.91 16 12 C 0.08 0.83 8.13 59.85 0.49 1.31 16 13 C 0.11 1.26 4.68 -67.72 -0.32 0.94 16 14 C -0.02 -0.18 7.31 -7.55 -0.06 -0.24 16 15 N -0.44 -6.30 4.49 -246.12 -1.10 -7.41 16 16 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 17 C 0.45 10.07 7.85 -10.98 -0.09 9.99 16 18 O -0.58 -15.00 16.01 5.55 0.09 -14.91 16 19 N -0.57 -13.94 5.29 -10.97 -0.06 -14.00 16 20 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.00 -0.06 6.74 -7.56 -0.05 -0.11 16 29 H 0.05 0.53 7.98 -51.93 -0.41 0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.16 5.81 -51.93 -0.30 0.85 16 34 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.18 1.41 6.82 -52.49 -0.36 1.05 16 36 H 0.06 0.67 7.43 -51.93 -0.39 0.28 16 37 H 0.06 0.59 6.25 -51.93 -0.32 0.26 16 38 H 0.10 1.38 5.85 -51.93 -0.30 1.08 16 39 H 0.12 1.24 7.26 -51.93 -0.38 0.87 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.76 7.91 -51.93 -0.41 0.34 16 42 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 43 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.08 0.94 7.42 -51.92 -0.39 0.56 16 47 H 0.09 1.29 7.22 -51.93 -0.37 0.92 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -32.69 387.16 -9.09 -41.78 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.38 Total: 10.22 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.45 Total: 11.17 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -1.24 Total: -62.68 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.17 Total: -22.09 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.69 -9.09 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499792901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds