Wall clock time and date at job start Wed Apr 1 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47696 * 2 1 4 4 N 1.32156 * 120.53798 * 264.41990 * 3 2 1 5 5 C 1.31860 * 120.96653 * 180.33141 * 4 3 2 6 6 N 1.31882 * 122.09508 * 359.65297 * 5 4 3 7 7 C 1.32133 * 120.96837 * 0.02562 * 6 5 4 8 8 C 1.39926 * 120.53721 * 84.12626 * 3 2 1 9 9 C 1.47835 * 120.93699 * 359.97438 * 8 3 2 10 10 O 1.21553 * 120.00223 * 46.78519 * 9 8 3 11 11 N 1.34777 * 119.99829 * 226.78177 * 9 8 3 12 12 C 1.46503 * 120.00092 * 5.29900 * 11 9 8 13 13 C 1.46497 * 120.00173 * 185.29224 * 11 9 8 14 14 C 1.53516 * 114.17083 * 120.00239 * 13 11 9 15 15 N 1.47480 * 87.93232 * 87.81548 * 14 13 11 16 16 C 1.46899 * 111.00135 * 138.70784 * 15 14 13 17 17 C 1.50700 * 109.47296 * 170.00109 * 16 15 14 18 18 O 1.21290 * 119.99805 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 179.72284 * 17 16 15 20 20 C 1.37095 * 119.99809 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00126 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99724 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99945 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47245 * 59.99847 * 24 22 20 26 26 H 1.48502 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46858 * 299.99469 * 24 22 20 28 28 C 1.47474 * 87.83616 * 27.00857 * 15 14 13 29 29 H 1.09006 * 109.46734 * 299.99978 * 1 2 3 30 30 H 1.08999 * 109.47027 * 59.99490 * 1 2 3 31 31 H 1.08993 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46788 * 239.99761 * 2 1 3 33 33 H 1.08999 * 109.47027 * 120.00510 * 2 1 3 34 34 H 1.08000 * 118.94910 * 179.68041 * 5 4 3 35 35 H 1.07997 * 120.54064 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47282 * 266.31488 * 12 11 9 37 37 H 1.09002 * 109.47109 * 26.30650 * 12 11 9 38 38 H 1.08996 * 109.47541 * 146.30920 * 12 11 9 39 39 H 1.08999 * 113.25596 * 347.05905 * 13 11 9 40 40 H 1.09004 * 113.47242 * 333.04836 * 14 13 11 41 41 H 1.08999 * 113.53685 * 202.59097 * 14 13 11 42 42 H 1.08997 * 109.47053 * 49.99810 * 16 15 14 43 43 H 1.09000 * 109.46874 * 290.00293 * 16 15 14 44 44 H 0.97003 * 119.99741 * 359.97438 * 19 17 16 45 45 H 0.97000 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.09008 * 113.47427 * 87.75762 * 28 15 14 47 47 H 1.09002 * 113.47976 * 218.22135 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3607 2.0169 -1.1329 5 6 2.8074 3.2575 -1.1420 6 7 2.9419 3.9621 -0.0353 7 6 2.6312 3.4464 1.1409 8 6 2.1532 2.1321 1.1989 9 6 1.7920 1.5111 2.4909 10 8 2.1847 0.3922 2.7583 11 7 1.0272 2.1854 3.3722 12 6 0.4579 3.4842 3.0046 13 6 0.7652 1.6196 4.6979 14 6 1.2541 2.4930 5.8619 15 7 -0.0476 3.1850 5.8193 16 6 -0.5538 3.4384 7.1748 17 6 -1.7489 4.3535 7.1018 18 8 -2.1402 4.7555 6.0264 19 7 -2.3861 4.7211 8.2311 20 6 -3.4737 5.5532 8.1647 21 1 -3.8195 5.9144 7.2075 22 6 -4.1302 5.9326 9.3290 23 7 -3.7090 5.4935 10.4938 24 14 -5.6116 7.0670 9.2385 25 1 -6.6736 6.4299 8.4191 26 1 -6.1267 7.3187 10.6084 27 1 -5.2118 8.3546 8.6163 28 6 -0.6243 1.9472 5.2623 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0711 3.7112 -2.0860 35 1 2.7444 4.0295 2.0429 36 1 1.1234 4.2804 3.3383 37 1 0.3426 3.5371 1.9220 38 1 -0.5160 3.6017 3.4798 39 1 1.0442 0.5692 4.7803 40 1 2.0956 3.1343 5.5999 41 1 1.4197 1.9361 6.7842 42 1 0.2274 3.9079 7.7725 43 1 -0.8462 2.4948 7.6356 44 1 -2.0757 4.3964 9.0908 45 1 -4.1672 5.7587 11.3066 46 1 -0.9604 1.2437 6.0242 47 1 -1.3748 2.1259 4.4923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499792901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:46 Heat of formation + Delta-G solvation = 9.143347 kcal Electronic energy + Delta-G solvation = -30454.438262 eV Core-core repulsion = 26252.447624 eV Total energy + Delta-G solvation = -4201.990638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61799 -41.71825 -40.19171 -39.40553 -36.48855 -35.95681 -35.77617 -34.05180 -33.25654 -32.22692 -31.12574 -28.27273 -27.48851 -26.89406 -26.49198 -26.05875 -24.86388 -23.07537 -22.16941 -21.06590 -19.91112 -19.89451 -19.11110 -18.44782 -17.95455 -17.80880 -17.54325 -16.76493 -16.66213 -16.42465 -16.04200 -15.92598 -15.67780 -15.41723 -15.34896 -14.97691 -14.77429 -14.54423 -14.37322 -14.06255 -13.68922 -13.64716 -13.50818 -13.41301 -13.07269 -12.94064 -12.79880 -12.63846 -12.59839 -12.42716 -12.22985 -12.15196 -12.02900 -11.90015 -11.71996 -11.46922 -11.01128 -10.67480 -10.42318 -10.34945 -9.98526 -9.77396 -9.69985 -8.45062 -5.93190 -0.59886 -0.13471 1.39481 1.39831 1.41644 1.52034 1.71519 2.09941 2.29227 2.57663 2.83284 2.87947 3.03495 3.21035 3.21803 3.25529 3.37963 3.49099 3.74093 3.79116 4.10376 4.13223 4.17824 4.21973 4.25610 4.29843 4.42245 4.42643 4.46238 4.56102 4.58664 4.62857 4.68934 4.79571 4.80693 4.94221 4.99850 5.04210 5.11882 5.26565 5.33375 5.42065 5.42907 5.74263 5.86586 6.07304 6.20787 6.63172 6.86247 6.89094 7.15547 7.60337 8.16510 8.72145 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.547109 B =13142.421768 C =13566.768223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C 0.223 3.777 4 N -0.533 5.533 5 C 0.313 3.687 6 N -0.536 5.536 7 C 0.191 3.809 8 C -0.248 4.248 9 C 0.580 3.420 10 O -0.551 6.551 11 N -0.576 5.576 12 C 0.086 3.914 13 C 0.122 3.878 14 C -0.006 4.006 15 N -0.463 5.463 16 C 0.021 3.979 17 C 0.444 3.556 18 O -0.616 6.616 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 C -0.006 4.006 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.189 0.811 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.097 0.903 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -10.228 -16.195 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C 0.076 3.924 4 N -0.247 5.247 5 C 0.028 3.972 6 N -0.249 5.249 7 C 0.024 3.976 8 C -0.255 4.255 9 C 0.368 3.632 10 O -0.430 6.430 11 N -0.305 5.305 12 C -0.056 4.056 13 C 0.017 3.983 14 C -0.136 4.136 15 N -0.186 5.186 16 C -0.111 4.111 17 C 0.232 3.768 18 O -0.501 6.501 19 N -0.216 5.216 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.813 3.187 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.135 4.135 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.206 0.794 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.712 -9.397 -17.774 24.336 hybrid contribution -0.948 -0.252 2.006 2.233 sum 12.764 -9.648 -15.767 22.464 Atomic orbital electron populations 1.21626 0.92694 1.03611 1.01455 1.20864 0.97463 0.88995 1.05680 1.22099 0.86763 0.96769 0.86743 1.68458 1.14229 1.12784 1.29194 1.25923 0.87139 0.85989 0.98194 1.68578 1.18514 1.38454 0.99379 1.23831 0.86448 0.89952 0.97367 1.21474 1.09925 0.98368 0.95759 1.17878 0.77868 0.84555 0.82934 1.90730 1.55278 1.19226 1.77810 1.47330 1.48725 1.21055 1.13437 1.21902 1.00646 0.83159 0.99917 1.22060 0.95838 0.98826 0.81540 1.24389 0.94074 0.96398 0.98691 1.68841 1.04011 1.28694 1.17008 1.22390 0.96100 0.99407 0.93189 1.20791 0.86787 0.85376 0.83872 1.90479 1.69456 1.60371 1.29818 1.41961 1.27634 1.43903 1.08133 1.19581 1.06910 1.25096 0.94398 0.90449 1.25990 1.01711 0.99520 0.94107 1.69662 1.42536 1.45877 0.98197 0.85037 0.77738 0.78282 0.77593 1.19766 1.19611 1.19796 1.24320 0.97254 0.91776 1.00182 0.94033 0.92164 0.89744 0.88151 0.88339 0.75014 0.79425 0.91053 0.91524 0.90501 0.85758 0.88935 0.87726 0.87409 0.89633 0.77092 0.91404 0.88523 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.90 71.98 0.71 -1.52 16 2 C -0.09 -1.66 5.78 29.85 0.17 -1.49 16 3 C 0.22 4.55 6.11 42.92 0.26 4.82 16 4 N -0.53 -10.30 10.36 -187.07 -1.94 -12.24 16 5 C 0.31 5.10 12.27 180.84 2.22 7.32 16 6 N -0.54 -9.98 10.42 -198.97 -2.07 -12.05 16 7 C 0.19 3.51 9.20 85.07 0.78 4.29 16 8 C -0.25 -5.10 4.75 -19.91 -0.09 -5.19 16 9 C 0.58 13.07 6.69 86.78 0.58 13.65 16 10 O -0.55 -14.76 14.35 -3.88 -0.06 -14.82 16 11 N -0.58 -12.24 3.11 -825.02 -2.57 -14.81 16 12 C 0.09 1.86 8.13 127.77 1.04 2.89 16 13 C 0.12 2.51 4.68 45.45 0.21 2.72 16 14 C -0.01 -0.12 7.31 83.57 0.61 0.49 16 15 N -0.46 -12.74 4.49 -932.58 -4.18 -16.93 16 16 C 0.02 0.64 5.30 85.56 0.45 1.09 16 17 C 0.44 20.16 7.85 87.66 0.69 20.84 16 18 O -0.62 -32.77 16.01 -3.06 -0.05 -32.82 16 19 N -0.58 -28.82 5.29 -306.99 -1.62 -30.45 16 20 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 23 N -0.92 -49.16 13.05 21.66 0.28 -48.87 16 24 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 C -0.01 -0.14 6.74 83.57 0.56 0.43 16 29 H 0.04 0.79 7.98 -2.38 -0.02 0.77 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 2.04 5.81 -2.39 -0.01 2.03 16 34 H 0.23 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.19 2.79 6.82 -2.91 -0.02 2.77 16 36 H 0.07 1.43 7.43 -2.39 -0.02 1.41 16 37 H 0.07 1.31 6.25 -2.39 -0.01 1.30 16 38 H 0.08 2.12 5.85 -2.39 -0.01 2.11 16 39 H 0.12 2.43 7.26 -2.39 -0.02 2.41 16 40 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.10 1.58 7.91 -2.39 -0.02 1.56 16 42 H 0.11 2.93 8.08 -2.39 -0.02 2.91 16 43 H 0.09 2.23 7.30 -2.39 -0.02 2.22 16 44 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.10 2.05 7.42 -2.38 -0.02 2.03 16 47 H 0.07 2.05 7.22 -2.39 -0.02 2.04 16 Total: -1.00 -71.17 387.16 -0.41 -71.58 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.29 Total: 34.37 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 9.48 Total: 32.46 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -12.10 Total: -135.34 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.10 Total: -47.63 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.17 -0.41 -71.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499792901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.720 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds