Wall clock time and date at job start Wed Apr 1 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31910 * 119.04316 * 2 1 4 4 C 1.32174 * 121.03000 * 180.02562 * 3 2 1 5 5 C 1.38804 * 119.14946 * 359.97438 * 4 3 2 6 6 C 1.39497 * 118.26394 * 0.02562 * 5 4 3 7 7 C 1.48447 * 120.55145 * 179.97438 * 6 5 4 8 8 O 1.21479 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00325 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00030 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47255 * 324.99480 * 10 9 7 12 12 C 1.53001 * 109.47211 * 85.00066 * 10 9 7 13 13 C 1.53007 * 109.46756 * 204.99692 * 10 9 7 14 14 C 1.53931 * 113.73120 * 162.05964 * 13 10 9 15 15 N 1.48191 * 86.09940 * 221.96095 * 14 13 10 16 16 C 1.46902 * 111.07166 * 137.52424 * 15 14 13 17 17 C 1.50705 * 109.47148 * 90.56495 * 16 15 14 18 18 O 1.21288 * 119.99864 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99841 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00304 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99530 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00297 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00081 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99922 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47390 * 89.99668 * 24 22 20 26 26 H 1.48500 * 109.46949 * 209.99639 * 24 22 20 27 27 H 1.48501 * 109.47395 * 329.99400 * 24 22 20 28 28 C 1.47958 * 90.80196 * 24.59987 * 15 14 13 29 29 N 1.31552 * 119.03541 * 180.27566 * 2 1 3 30 30 H 1.08998 * 109.46669 * 89.99618 * 1 2 3 31 31 H 1.08987 * 109.47441 * 210.00373 * 1 2 3 32 32 H 1.09005 * 109.46311 * 330.00665 * 1 2 3 33 33 H 1.07999 * 120.42288 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.86933 * 180.02562 * 5 4 3 35 35 H 0.97000 * 119.99571 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47094 * 55.99990 * 12 10 9 37 37 H 1.09004 * 109.46597 * 296.00589 * 12 10 9 38 38 H 1.08995 * 109.46769 * 176.00435 * 12 10 9 39 39 H 1.08999 * 112.93767 * 293.62637 * 13 10 9 40 40 H 1.09001 * 113.76217 * 336.23484 * 14 13 10 41 41 H 1.08997 * 113.76121 * 107.60350 * 14 13 10 42 42 H 1.08999 * 109.46575 * 210.55816 * 16 15 14 43 43 H 1.08998 * 109.47204 * 330.55950 * 16 15 14 44 44 H 0.97004 * 120.00015 * 359.97438 * 19 17 16 45 45 H 0.96999 * 120.00056 * 180.02562 * 23 22 20 46 46 H 1.08993 * 113.75797 * 221.08813 * 28 15 14 47 47 H 1.09000 * 113.75775 * 89.72252 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1475 1.1532 0.0000 4 6 3.4684 1.1991 -0.0005 5 6 4.1861 0.0110 -0.0005 6 6 3.4760 -1.1897 -0.0005 7 6 4.1923 -2.4900 -0.0011 8 8 5.4068 -2.5144 -0.0020 9 7 3.4951 -3.6435 -0.0006 10 6 4.2021 -4.9266 -0.0017 11 1 5.1139 -4.8386 -0.5922 12 6 4.5599 -5.3130 1.4348 13 6 3.3023 -6.0040 -0.6105 14 6 4.0630 -7.2634 -1.0631 15 7 3.1960 -7.2321 -2.2645 16 6 3.9687 -7.5172 -3.4810 17 6 3.9550 -9.0002 -3.7487 18 8 3.3606 -9.7462 -2.9996 19 7 4.6042 -9.4976 -4.8199 20 6 4.5923 -10.8467 -5.0633 21 1 4.0623 -11.5109 -4.3966 22 6 5.2612 -11.3594 -6.1680 23 7 5.2502 -12.6526 -6.4009 24 14 6.1773 -10.2104 -7.3212 25 1 7.5789 -10.0557 -6.8556 26 1 6.1713 -10.7783 -8.6934 27 1 5.5099 -8.8839 -7.3317 28 6 2.9845 -5.7770 -2.0995 29 7 2.1456 -1.1502 -0.0055 30 1 -0.3632 0.0001 -1.0277 31 1 -0.3633 -0.8898 0.5138 32 1 -0.3632 0.8901 0.5138 33 1 3.9827 2.1487 -0.0001 34 1 5.2661 0.0160 -0.0005 35 1 2.5253 -3.6240 0.0006 36 1 3.6550 -5.3318 2.0422 37 1 5.2574 -4.5823 1.8445 38 1 5.0223 -6.3000 1.4410 39 1 2.4235 -6.2173 -0.0019 40 1 5.1169 -7.0865 -1.2775 41 1 3.8976 -8.1301 -0.4232 42 1 3.5234 -6.9915 -4.3256 43 1 4.9969 -7.1818 -3.3453 44 1 5.0800 -8.9009 -5.4188 45 1 5.7174 -13.0106 -7.1719 46 1 1.9590 -5.4584 -2.2861 47 1 3.7224 -5.1645 -2.6177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506673708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:41 Heat of formation + Delta-G solvation = 22.354127 kcal Electronic energy + Delta-G solvation = -29387.419089 eV Core-core repulsion = 25186.001313 eV Total energy + Delta-G solvation = -4201.417776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78691 -40.55557 -39.48231 -37.94675 -35.67049 -34.47577 -33.90515 -33.76432 -31.75439 -31.48551 -29.62895 -29.03638 -26.52864 -25.90700 -25.80868 -24.13004 -23.52962 -21.96135 -21.01470 -19.97862 -19.35365 -18.67211 -18.32527 -17.92802 -16.61486 -16.13723 -16.07060 -16.00061 -15.62267 -15.58657 -15.04643 -15.01948 -14.77861 -14.53085 -14.04725 -13.92672 -13.66037 -13.38534 -13.15101 -12.99960 -12.91187 -12.78088 -12.66037 -12.47434 -12.19443 -12.05255 -11.53445 -11.45358 -11.36659 -11.18094 -11.08501 -10.97996 -10.68927 -10.66629 -10.58268 -10.07564 -9.95485 -9.85604 -9.53972 -9.49510 -8.80710 -8.27594 -8.15044 -6.28767 -3.79938 -0.03617 0.34886 2.28575 2.48823 3.03791 3.07739 3.15944 3.24549 3.25965 3.46570 3.76312 3.82970 3.99852 4.11959 4.25731 4.32617 4.44030 4.45199 4.73324 4.85241 4.87240 4.91782 5.03826 5.04708 5.12923 5.19252 5.22902 5.33138 5.34962 5.37702 5.43859 5.55622 5.57076 5.63960 5.65904 5.76465 5.84749 5.93551 5.96196 6.04620 6.18349 6.27237 6.47997 7.03187 7.06940 7.42017 7.60715 7.68938 8.16897 8.63225 8.98120 9.45249 9.87310 10.84524 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.001877 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.109402 B =14911.989175 C =15180.460214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.318 3.682 3 N -0.506 5.506 4 C 0.155 3.845 5 C -0.179 4.179 6 C 0.137 3.863 7 C 0.570 3.430 8 O -0.524 6.524 9 N -0.697 5.697 10 C 0.148 3.852 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.448 5.448 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.556 6.556 19 N -0.595 5.595 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.005 3.995 29 N -0.495 5.495 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.412 0.588 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.090 0.910 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 30.009 14.173 33.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.221 5.221 4 C -0.013 4.013 5 C -0.201 4.201 6 C -0.011 4.011 7 C 0.353 3.647 8 O -0.398 6.398 9 N -0.348 5.348 10 C 0.044 3.956 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.125 4.125 17 C 0.241 3.759 18 O -0.437 6.437 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.124 4.124 29 N -0.213 5.213 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.249 0.751 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.223 28.749 14.465 32.604 hybrid contribution 2.107 1.350 -1.267 2.805 sum -3.116 30.099 13.198 33.013 Atomic orbital electron populations 1.20632 0.84993 1.04572 1.04346 1.23309 0.98415 0.82885 0.90319 1.68241 1.10492 1.30430 1.12965 1.23399 0.89401 0.98757 0.89700 1.22990 1.03995 0.92992 1.00169 1.21663 0.89920 0.94788 0.94777 1.17787 0.86583 0.82996 0.77307 1.90818 1.12635 1.86840 1.49556 1.45909 1.11300 1.04909 1.72634 1.21193 0.95684 0.81093 0.97669 0.89056 1.22150 1.02058 1.02395 0.95477 1.23352 0.99760 0.95049 0.96395 1.23983 0.95665 0.97331 0.93664 1.68414 1.34199 1.13413 1.00979 1.22521 0.97392 0.97275 0.95345 1.19586 0.83989 0.88740 0.83585 1.90560 1.45566 1.59571 1.48024 1.42231 1.48269 1.08499 1.24474 1.19423 1.31762 0.81218 1.10769 0.86312 1.25030 0.97869 0.95923 0.97423 1.69621 1.42743 1.10990 1.28942 0.86677 0.80642 0.80617 0.81470 1.19682 1.20191 1.19562 1.23983 1.02454 0.91323 0.94659 1.68189 1.08628 1.31258 1.13193 0.89206 0.89223 0.89328 0.80472 0.82101 0.75126 0.92119 0.92128 0.90792 0.87417 0.91128 0.88480 0.89371 0.92331 0.79818 0.91668 0.89208 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.32 36.01 0.37 -0.04 16 2 C 0.32 2.48 7.64 -157.30 -1.20 1.28 16 3 N -0.51 -3.99 10.32 -10.73 -0.11 -4.10 16 4 C 0.15 0.95 11.31 -17.20 -0.19 0.75 16 5 C -0.18 -1.30 9.72 -38.90 -0.38 -1.68 16 6 C 0.14 1.23 6.79 -82.64 -0.56 0.67 16 7 C 0.57 5.82 7.79 -12.05 -0.09 5.73 16 8 O -0.52 -6.71 16.09 5.38 0.09 -6.62 16 9 N -0.70 -6.03 4.94 -54.56 -0.27 -6.30 16 10 C 0.15 1.35 2.29 -67.93 -0.16 1.19 16 11 H 0.09 0.97 7.49 -51.93 -0.39 0.58 16 12 C -0.16 -1.38 9.46 37.16 0.35 -1.03 16 13 C -0.13 -1.24 3.35 -89.68 -0.30 -1.54 16 14 C 0.02 0.30 7.35 -2.63 -0.02 0.28 16 15 N -0.45 -6.98 5.65 -239.54 -1.35 -8.33 16 16 C 0.01 0.12 5.28 -4.97 -0.03 0.09 16 17 C 0.46 10.57 7.83 -10.98 -0.09 10.48 16 18 O -0.56 -15.28 16.01 5.55 0.09 -15.19 16 19 N -0.59 -14.42 5.09 -10.96 -0.06 -14.48 16 20 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 21 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.05 13.96 55.50 0.77 -25.27 16 24 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16 28 C 0.00 0.06 7.39 -2.76 -0.02 0.04 16 29 N -0.50 -4.25 9.60 -7.32 -0.07 -4.32 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.35 8.14 -51.94 -0.42 -0.07 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 34 H 0.16 0.99 7.74 -52.48 -0.41 0.58 16 35 H 0.41 3.09 7.99 -40.82 -0.33 2.76 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.60 7.99 -51.93 -0.42 0.19 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.87 7.38 -51.93 -0.38 0.49 16 41 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 44 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.71 7.88 -51.93 -0.41 0.31 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -36.28 398.86 -8.90 -45.19 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.73 Total: 10.10 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.56 Total: 8.41 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -1.08 Total: -62.81 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.28 -8.90 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506673708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds