Wall clock time and date at job start Wed Apr 1 2020 04:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 H 1.09003 * 109.88271 * 56.71001 * 3 2 1 5 5 C 1.54319 * 109.89317 * 295.51465 * 3 2 1 6 6 H 1.09005 * 110.69975 * 336.69260 * 5 3 2 7 7 N 1.46494 * 110.70843 * 99.92279 * 5 3 2 8 8 C 1.34771 * 120.00273 * 205.00052 * 7 5 3 9 9 O 1.21520 * 120.00087 * 0.02562 * 8 7 5 10 10 C 1.48138 * 120.00244 * 180.02562 * 8 7 5 11 11 C 1.40115 * 121.14392 * 179.72607 * 10 8 7 12 12 C 1.38507 * 117.81563 * 179.73957 * 11 10 8 13 13 N 1.31909 * 119.97320 * 0.53961 * 12 11 10 14 14 N 1.28283 * 122.51802 * 359.71652 * 13 12 11 15 15 C 1.31922 * 122.31933 * 0.02562 * 14 13 12 16 16 C 1.55136 * 103.02040 * 218.31349 * 5 3 2 17 17 C 1.54902 * 101.65672 * 35.64994 * 16 5 3 18 18 N 1.47450 * 109.89129 * 177.74322 * 3 2 1 19 19 C 1.46900 * 110.99492 * 356.14652 * 18 3 2 20 20 C 1.50704 * 109.46734 * 187.46905 * 19 18 3 21 21 O 1.21287 * 120.00359 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99695 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99954 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99472 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99706 * 179.97438 * 23 22 20 26 26 N 1.31404 * 120.00528 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99371 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47338 * 60.00563 * 27 25 23 29 29 H 1.48503 * 109.46768 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47406 * 300.00214 * 27 25 23 31 31 H 1.09007 * 109.47308 * 55.97637 * 1 2 3 32 32 H 1.08996 * 109.47424 * 295.97184 * 1 2 3 33 33 H 1.09000 * 109.47509 * 175.96972 * 1 2 3 34 34 H 1.08997 * 109.47344 * 120.00150 * 2 1 3 35 35 H 1.09005 * 109.47505 * 240.00287 * 2 1 3 36 36 H 0.97001 * 119.99797 * 25.00506 * 7 5 3 37 37 H 1.07996 * 121.09152 * 359.96862 * 11 10 8 38 38 H 1.08004 * 120.01085 * 180.25324 * 12 11 10 39 39 H 1.08006 * 120.16843 * 180.02562 * 15 14 13 40 40 H 1.09003 * 110.99157 * 277.55448 * 16 5 3 41 41 H 1.09000 * 111.02640 * 153.75707 * 16 5 3 42 42 H 1.09009 * 110.37363 * 204.10725 * 17 16 5 43 43 H 1.08995 * 110.46940 * 81.81087 * 17 16 5 44 44 H 1.08997 * 109.47472 * 307.47486 * 19 18 3 45 45 H 1.09007 * 109.46910 * 67.47428 * 19 18 3 46 46 H 0.97004 * 120.00418 * 359.97438 * 22 20 19 47 47 H 0.96994 * 120.00546 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6330 1.9795 0.8568 5 6 1.6256 2.1459 -1.3096 6 1 1.4426 1.4156 -2.0979 7 7 0.4447 2.9858 -1.0953 8 6 -0.3715 3.2770 -2.1274 9 8 -0.1282 2.8423 -3.2358 10 6 -1.5654 4.1268 -1.9108 11 6 -2.4269 4.4491 -2.9677 12 6 -3.5257 5.2441 -2.6865 13 7 -3.7265 5.6800 -1.4578 14 7 -2.9388 5.3930 -0.4869 15 6 -1.8677 4.6396 -0.6467 16 6 2.8647 3.0167 -1.6456 17 6 4.0248 2.1078 -1.1686 18 7 3.5134 1.4536 0.0546 19 6 4.0456 0.0906 0.1845 20 6 5.5327 0.1525 0.4210 21 8 6.0938 1.2263 0.4763 22 7 6.2391 -0.9855 0.5709 23 6 7.5919 -0.9292 0.7866 24 1 8.0913 0.0271 0.8367 25 6 8.3200 -2.1025 0.9417 26 7 7.7122 -3.2659 0.8813 27 14 10.1633 -2.0257 1.2348 28 1 10.4350 -1.2673 2.4823 29 1 10.7012 -3.4036 1.3668 30 1 10.8188 -1.3454 0.0891 31 1 -0.3634 0.5750 -0.8518 32 1 -0.3634 0.4500 0.9238 33 1 -0.3634 -1.0251 -0.0722 34 1 1.8933 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 0.2503 3.3325 -0.2104 37 1 -2.2423 4.0865 -3.9681 38 1 -4.2152 5.5108 -3.4738 39 1 -1.2283 4.4194 0.1955 40 1 2.8471 3.9528 -1.0874 41 1 2.9315 3.2049 -2.7172 42 1 4.9061 2.7067 -0.9384 43 1 4.2613 1.3619 -1.9273 44 1 3.5644 -0.4088 1.0254 45 1 3.8462 -0.4661 -0.7312 46 1 5.7903 -1.8443 0.5271 47 1 8.2204 -4.0849 0.9899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566022632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:43 Heat of formation + Delta-G solvation = 5.055151 kcal Electronic energy + Delta-G solvation = -30220.799549 eV Core-core repulsion = 26018.631633 eV Total energy + Delta-G solvation = -4202.167916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74322 -40.52493 -39.22940 -37.71342 -34.96644 -33.97086 -33.76129 -33.37120 -33.12667 -31.35746 -30.83633 -27.81822 -26.88675 -25.73163 -25.06185 -24.25138 -23.25841 -21.71538 -21.10315 -20.52101 -18.94896 -18.45589 -18.23188 -17.77114 -16.94347 -16.82378 -16.08580 -15.89171 -15.79400 -15.46388 -14.96096 -14.86960 -14.70687 -14.30657 -14.24466 -13.99311 -13.86245 -13.78619 -13.12055 -13.02680 -12.68215 -12.29592 -12.06306 -11.99901 -11.57523 -11.53483 -11.48678 -11.30559 -11.14044 -11.10880 -11.01751 -10.88758 -10.79195 -10.71216 -10.51794 -10.44472 -10.22344 -10.15812 -9.49952 -9.41877 -8.47631 -7.99215 -7.91770 -6.42434 -3.83220 -0.23762 0.28084 2.25285 2.45794 3.08841 3.19203 3.25052 3.29242 3.48004 3.70108 3.86525 3.91321 3.94662 4.05625 4.19337 4.26857 4.34821 4.55583 4.68120 4.71273 4.96874 5.00247 5.06756 5.10615 5.19594 5.21800 5.24443 5.26203 5.40619 5.48299 5.50485 5.61462 5.72671 5.79063 5.82586 5.86047 5.90877 6.04833 6.09714 6.21490 6.26926 6.42453 6.91381 7.14728 7.17568 7.54151 7.59647 8.05081 8.06102 8.60933 9.17393 9.53598 10.05465 10.75231 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030170 B = 0.001924 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.846020 B =14548.677519 C =14800.116685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.069 3.931 4 H 0.090 0.910 5 C 0.128 3.872 6 H 0.102 0.898 7 N -0.704 5.704 8 C 0.563 3.437 9 O -0.522 6.522 10 C -0.131 4.131 11 C -0.057 4.057 12 C 0.039 3.961 13 N -0.228 5.228 14 N -0.240 5.240 15 C 0.070 3.930 16 C -0.142 4.142 17 C 0.054 3.946 18 N -0.495 5.495 19 C 0.036 3.964 20 C 0.442 3.558 21 O -0.579 6.579 22 N -0.565 5.565 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 10.372 -6.007 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.041 4.041 4 H 0.107 0.893 5 C 0.023 3.977 6 H 0.120 0.880 7 N -0.355 5.355 8 C 0.347 3.653 9 O -0.398 6.398 10 C -0.145 4.145 11 C -0.087 4.087 12 C -0.125 4.125 13 N -0.070 5.070 14 N -0.081 5.081 15 C -0.095 4.095 16 C -0.181 4.181 17 C -0.074 4.074 18 N -0.219 5.219 19 C -0.095 4.095 20 C 0.228 3.772 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.182 0.818 38 H 0.199 0.801 39 H 0.193 0.807 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.954 11.729 -5.253 25.439 hybrid contribution 1.232 -1.841 -1.126 2.485 sum -20.722 9.889 -6.379 23.830 Atomic orbital electron populations 1.21764 0.95520 1.01860 1.01635 1.22225 0.96317 0.96602 1.03372 1.22768 0.89391 0.95727 0.96189 0.89261 1.22474 0.83805 0.92668 0.98802 0.87961 1.45858 1.26149 1.51994 1.11515 1.17883 0.82057 0.80354 0.84981 1.90825 1.73278 1.52272 1.23387 1.21269 0.97622 1.00075 0.95558 1.22681 0.92004 0.93058 1.00999 1.24453 0.96689 0.94446 0.96915 1.72930 1.20819 1.15232 0.98001 1.73117 1.01304 1.09791 1.23907 1.24581 0.95653 0.92685 0.96547 1.23165 0.93920 0.99177 1.01812 1.23020 0.97913 0.96831 0.89589 1.63474 1.02971 1.17378 1.38042 1.22220 0.95808 0.90014 1.01486 1.19761 0.87737 0.85131 0.84614 1.90504 1.71275 1.28688 1.55767 1.41845 1.08374 1.06852 1.63070 1.19640 0.82681 0.94582 1.45920 0.87993 1.25250 1.00583 0.94656 0.97448 1.69594 1.37040 0.97527 1.50200 0.85927 0.82131 0.77082 0.79131 1.19907 1.21001 1.19946 0.92898 0.92651 0.92548 0.90093 0.91322 0.76190 0.81807 0.80121 0.80741 0.90252 0.90451 0.88173 0.93642 0.88792 0.93031 0.77543 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.76 37.16 0.36 -0.89 16 2 C -0.15 -1.48 4.08 -26.74 -0.11 -1.59 16 3 C 0.07 0.74 3.23 -66.72 -0.22 0.53 16 4 H 0.09 0.87 7.72 -51.93 -0.40 0.47 16 5 C 0.13 1.29 1.94 -66.11 -0.13 1.17 16 6 H 0.10 1.18 7.19 -51.93 -0.37 0.81 16 7 N -0.70 -5.45 4.53 -52.89 -0.24 -5.69 16 8 C 0.56 5.11 7.80 -12.20 -0.10 5.01 16 9 O -0.52 -6.52 16.14 5.35 0.09 -6.43 16 10 C -0.13 -0.97 5.92 -104.57 -0.62 -1.59 16 11 C -0.06 -0.36 9.77 -38.78 -0.38 -0.74 16 12 C 0.04 0.23 11.30 -17.42 -0.20 0.04 16 13 N -0.23 -2.06 11.48 30.53 0.35 -1.71 16 14 N -0.24 -2.24 11.49 30.78 0.35 -1.88 16 15 C 0.07 0.48 10.84 -16.96 -0.18 0.30 16 16 C -0.14 -1.63 6.76 -24.60 -0.17 -1.80 16 17 C 0.05 0.81 5.64 -2.30 -0.01 0.80 16 18 N -0.50 -7.47 4.91 -224.77 -1.10 -8.58 16 19 C 0.04 0.60 4.17 -4.97 -0.02 0.58 16 20 C 0.44 10.10 7.56 -10.98 -0.08 10.01 16 21 O -0.58 -15.13 14.42 5.55 0.08 -15.05 16 22 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 23 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 27 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 30 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.05 0.46 6.76 -51.92 -0.35 0.11 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.85 6.24 -51.93 -0.32 0.53 16 35 H 0.07 0.74 7.01 -51.93 -0.36 0.37 16 36 H 0.40 2.10 6.53 -40.82 -0.27 1.83 16 37 H 0.16 0.84 7.80 -52.49 -0.41 0.43 16 38 H 0.18 0.43 8.06 -52.48 -0.42 0.01 16 39 H 0.18 0.66 6.53 -52.48 -0.34 0.32 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.78 7.26 -51.92 -0.38 1.40 16 43 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 44 H 0.09 1.42 6.16 -51.93 -0.32 1.10 16 45 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 46 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -34.03 383.83 -7.36 -41.39 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.23 Total: 9.89 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.09 Total: 3.98 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.03 Total: -55.43 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.17 Total: -21.48 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.03 -7.36 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566022632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.445 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds