Wall clock time and date at job start Wed Apr 1 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46528 * 2 1 4 4 H 1.09004 * 109.46077 * 182.68735 * 3 2 1 5 5 C 1.52993 * 109.47499 * 302.68664 * 3 2 1 6 6 C 1.53001 * 109.47133 * 293.32672 * 5 3 2 7 7 F 1.39903 * 109.46960 * 176.92247 * 6 5 3 8 8 F 1.39903 * 109.47061 * 296.91917 * 6 5 3 9 9 C 1.50696 * 109.46910 * 62.69239 * 3 2 1 10 10 O 1.21281 * 119.99621 * 262.12370 * 9 3 2 11 11 N 1.34778 * 120.00200 * 82.12912 * 9 3 2 12 12 C 1.47015 * 125.64825 * 355.55059 * 11 9 3 13 13 C 1.54328 * 107.27346 * 178.97995 * 12 11 9 14 14 C 1.55164 * 102.93828 * 337.80763 * 13 12 11 15 15 H 1.08994 * 111.00577 * 277.39071 * 14 13 12 16 16 N 1.46901 * 111.00164 * 153.57702 * 14 13 12 17 17 C 1.46901 * 111.00040 * 89.58052 * 16 14 13 18 18 C 1.50702 * 109.46757 * 179.97438 * 17 16 14 19 19 O 1.21284 * 120.00289 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99516 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00232 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99478 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00608 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99629 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00190 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47648 * 89.99738 * 25 23 21 27 27 H 1.48504 * 109.47068 * 209.99831 * 25 23 21 28 28 H 1.48500 * 109.47142 * 329.99522 * 25 23 21 29 29 C 1.47472 * 125.62757 * 175.55762 * 11 9 3 30 30 H 1.09003 * 109.47419 * 65.84401 * 1 2 3 31 31 H 1.09004 * 109.47249 * 185.84377 * 1 2 3 32 32 H 1.09007 * 109.47210 * 305.84231 * 1 2 3 33 33 H 1.08994 * 109.47172 * 240.00741 * 2 1 3 34 34 H 1.09000 * 109.47109 * 119.99794 * 2 1 3 35 35 H 1.09007 * 109.46988 * 53.32139 * 5 3 2 36 36 H 1.09000 * 109.47520 * 173.32279 * 5 3 2 37 37 H 1.08999 * 109.47601 * 56.91974 * 6 5 3 38 38 H 1.09004 * 109.88353 * 59.56634 * 12 11 9 39 39 H 1.09001 * 110.01292 * 298.47012 * 12 11 9 40 40 H 1.09000 * 110.71992 * 219.44658 * 13 12 11 41 41 H 1.08997 * 110.87001 * 96.24018 * 13 12 11 42 42 H 1.00903 * 111.00226 * 325.62557 * 16 14 13 43 43 H 1.09001 * 109.46944 * 299.99824 * 17 16 14 44 44 H 1.09000 * 109.46583 * 60.00181 * 17 16 14 45 45 H 0.97003 * 120.00392 * 0.02562 * 20 18 17 46 46 H 0.97005 * 119.99850 * 180.02562 * 24 23 21 47 47 H 1.08998 * 110.34795 * 85.25147 * 29 11 9 48 48 H 1.09001 * 110.40200 * 322.91264 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1289 1.4429 -0.0482 5 6 1.4754 2.1831 -1.2140 6 6 2.0620 1.5850 -2.4943 7 9 1.4930 2.2149 -3.6064 8 9 3.4475 1.7782 -2.5070 9 6 1.5927 2.1334 1.2625 10 8 0.6071 2.8400 1.2505 11 7 2.2881 1.9660 2.4048 12 6 3.4404 1.0706 2.5831 13 6 3.9230 1.2294 4.0403 14 6 3.3699 2.6231 4.4395 15 1 4.0286 3.4190 4.0922 16 7 3.1624 2.7111 5.8911 17 6 4.3724 3.1972 6.5675 18 6 4.1216 3.2747 8.0514 19 8 3.0414 2.9559 8.5014 20 7 5.0978 3.6983 8.8785 21 6 4.8700 3.7683 10.2286 22 1 3.9081 3.4844 10.6293 23 6 5.8762 4.2055 11.0813 24 7 7.0464 4.5514 10.5937 25 14 5.5658 4.3002 12.9209 26 1 5.9342 3.0076 13.5524 27 1 6.3885 5.3892 13.5063 28 1 4.1282 4.5792 13.1667 29 6 2.0186 2.6509 3.6827 30 1 -0.3634 0.4205 -0.9377 31 1 -0.3634 -1.0223 0.1046 32 1 -0.3634 0.6018 0.8331 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.3902 2.0813 -1.2294 36 1 1.7405 3.2386 -1.1514 37 1 1.8436 0.5177 -2.5300 38 1 4.2383 1.3519 1.8957 39 1 3.1420 0.0380 2.4019 40 1 5.0118 1.2181 4.0894 41 1 3.5015 0.4507 4.6760 42 1 2.8691 1.8227 6.2691 43 1 5.1974 2.5117 6.3733 44 1 4.6265 4.1877 6.1900 45 1 5.9617 3.9536 8.5186 46 1 7.7489 4.8562 11.1891 47 1 1.2565 2.1137 4.2473 48 1 1.7050 3.6794 3.5039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567097279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:25 Heat of formation + Delta-G solvation = -183.350028 kcal Electronic energy + Delta-G solvation = -30467.827931 eV Core-core repulsion = 25806.800967 eV Total energy + Delta-G solvation = -4661.026964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.36967 -47.37216 -40.71415 -38.72283 -37.90517 -36.16410 -34.83657 -33.83650 -31.31123 -31.09896 -30.76621 -29.30808 -27.48796 -25.98796 -24.17678 -24.05252 -23.42852 -21.55520 -20.89566 -19.33486 -19.23137 -18.10506 -18.02224 -17.91029 -17.23166 -16.73308 -16.37793 -16.04245 -15.80133 -15.35318 -15.20293 -14.78586 -14.55316 -14.27082 -14.13927 -13.86569 -13.74191 -13.72771 -13.60280 -13.29180 -13.25157 -13.01843 -12.96813 -12.78076 -12.39874 -12.37835 -12.05804 -11.92602 -11.70738 -11.53223 -11.44551 -11.41339 -11.33398 -11.23393 -11.07082 -10.97320 -10.41682 -10.25061 -10.01540 -9.54594 -8.92939 -8.53320 -8.15625 -8.00131 -6.45215 -3.86134 2.29916 2.55127 3.15549 3.24729 3.30718 3.38136 3.69985 3.85414 3.87124 3.96075 4.06133 4.16615 4.21978 4.33737 4.41661 4.47758 4.49456 4.72057 4.78281 4.81332 4.98889 5.00721 5.06700 5.09940 5.16364 5.21022 5.24413 5.35040 5.38000 5.51357 5.53977 5.59212 5.65486 5.69293 5.82676 5.83242 5.86184 5.90414 5.98328 6.21687 7.06676 7.21619 7.51411 7.52189 7.85048 8.02360 8.56969 9.14274 9.49985 10.01059 10.72396 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029687 B = 0.001626 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.955554 B =17217.179871 C =17549.321025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C -0.106 4.106 4 H 0.102 0.898 5 C -0.157 4.157 6 C 0.261 3.739 7 F -0.205 7.205 8 F -0.206 7.206 9 C 0.539 3.461 10 O -0.534 6.534 11 N -0.617 5.617 12 C 0.102 3.898 13 C -0.167 4.167 14 C 0.079 3.921 15 H 0.094 0.906 16 N -0.656 5.656 17 C 0.052 3.948 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 C 0.116 3.884 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.354 0.646 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.076 0.924 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 -10.600 -26.124 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.157 4.157 3 C -0.127 4.127 4 H 0.120 0.880 5 C -0.196 4.196 6 C 0.207 3.793 7 F -0.186 7.186 8 F -0.187 7.187 9 C 0.327 3.673 10 O -0.410 6.410 11 N -0.352 5.352 12 C -0.021 4.021 13 C -0.207 4.207 14 C -0.034 4.034 15 H 0.112 0.888 16 N -0.288 5.288 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.006 4.006 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.174 0.826 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.242 -9.696 -25.813 28.272 hybrid contribution 1.351 -0.512 0.603 1.566 sum -4.891 -10.208 -25.210 27.635 Atomic orbital electron populations 1.21929 0.94669 1.02331 1.03012 1.21579 0.97342 0.93434 1.03337 1.21275 1.02546 0.96480 0.92408 0.88005 1.22556 1.03936 1.02045 0.91015 1.21972 0.74615 0.98217 0.84462 1.92999 1.84626 1.85246 1.55745 1.92992 1.32138 1.96756 1.96817 1.19925 0.82739 0.81289 0.83382 1.90736 1.25559 1.39670 1.85080 1.48463 1.32112 1.43846 1.10731 1.22036 0.88284 0.94062 0.97748 1.23462 1.02290 0.99607 0.95348 1.22749 0.95455 0.95888 0.89260 0.88767 1.59901 1.32968 1.35622 1.00266 1.21698 0.90972 1.00892 0.94469 1.19770 0.85841 0.84768 0.87165 1.90531 1.24973 1.54019 1.77205 1.41858 1.13423 1.57603 1.07015 1.19707 1.00363 1.41498 0.81395 0.87886 1.25267 0.94930 0.96969 1.00761 1.69609 1.03612 1.44627 1.36400 0.85848 0.78583 0.77856 0.81954 1.20418 1.20902 1.19382 1.22183 0.97346 0.98525 0.82569 0.92176 0.92112 0.91647 0.90672 0.90612 0.87137 0.88801 0.87077 0.91130 0.91173 0.89651 0.89991 0.82554 0.93611 0.89447 0.77450 0.91842 0.90605 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.12 -0.59 5.41 -26.73 -0.14 -0.73 16 3 C -0.11 -0.71 1.87 -91.77 -0.17 -0.88 16 4 H 0.10 0.58 6.97 -51.93 -0.36 0.22 16 5 C -0.16 -1.09 4.06 -26.73 -0.11 -1.20 16 6 C 0.26 1.60 5.16 37.16 0.19 1.79 16 7 F -0.20 -1.72 17.34 2.25 0.04 -1.68 16 8 F -0.21 -1.63 16.83 2.25 0.04 -1.59 16 9 C 0.54 5.56 6.00 -10.99 -0.07 5.49 16 10 O -0.53 -7.48 15.89 5.56 0.09 -7.39 16 11 N -0.62 -5.95 3.33 -170.49 -0.57 -6.52 16 12 C 0.10 0.71 6.23 -3.07 -0.02 0.69 16 13 C -0.17 -1.35 6.56 -24.89 -0.16 -1.52 16 14 C 0.08 0.85 3.34 -65.56 -0.22 0.63 16 15 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 16 N -0.66 -9.63 6.02 -105.72 -0.64 -10.27 16 17 C 0.05 0.85 6.05 -4.97 -0.03 0.82 16 18 C 0.44 10.00 7.82 -10.99 -0.09 9.92 16 19 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 20 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 25 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.12 1.33 6.59 -2.50 -0.02 1.32 16 30 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 33 H 0.07 0.22 6.68 -51.93 -0.35 -0.13 16 34 H 0.08 0.36 6.70 -51.93 -0.35 0.01 16 35 H 0.11 0.78 6.10 -51.93 -0.32 0.47 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 0.35 6.55 -51.93 -0.34 0.01 16 38 H 0.07 0.40 7.74 -51.93 -0.40 -0.01 16 39 H 0.07 0.38 6.82 -51.93 -0.35 0.03 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.68 7.77 -51.93 -0.40 0.28 16 42 H 0.35 5.32 7.95 -39.29 -0.31 5.01 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 45 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.20 392.52 -7.19 -40.39 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.07 Total: 10.30 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.73 Total: 7.79 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.54 Total: -54.14 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.75 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.20 -7.19 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567097279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.961 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds