Wall clock time and date at job start Wed Apr 1 2020 04:58:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53009 * 109.46528 * 2 1
4 4 H 1.09004 * 109.46077 * 182.68735 * 3 2 1
5 5 C 1.52993 * 109.47499 * 302.68664 * 3 2 1
6 6 C 1.53001 * 109.47133 * 293.32672 * 5 3 2
7 7 F 1.39903 * 109.46960 * 176.92247 * 6 5 3
8 8 F 1.39903 * 109.47061 * 296.91917 * 6 5 3
9 9 C 1.50696 * 109.46910 * 62.69239 * 3 2 1
10 10 O 1.21281 * 119.99621 * 262.12370 * 9 3 2
11 11 N 1.34778 * 120.00200 * 82.12912 * 9 3 2
12 12 C 1.47015 * 125.64825 * 355.55059 * 11 9 3
13 13 C 1.54328 * 107.27346 * 178.97995 * 12 11 9
14 14 C 1.55164 * 102.93828 * 337.80763 * 13 12 11
15 15 H 1.08994 * 111.00577 * 277.39071 * 14 13 12
16 16 N 1.46901 * 111.00164 * 153.57702 * 14 13 12
17 17 C 1.46901 * 111.00040 * 89.58052 * 16 14 13
18 18 C 1.50702 * 109.46757 * 179.97438 * 17 16 14
19 19 O 1.21284 * 120.00289 * 0.02562 * 18 17 16
20 20 N 1.34775 * 119.99516 * 180.02562 * 18 17 16
21 21 C 1.37097 * 120.00232 * 180.02562 * 20 18 17
22 22 H 1.08003 * 119.99478 * 359.97438 * 21 20 18
23 23 C 1.38946 * 120.00608 * 180.02562 * 21 20 18
24 24 N 1.31406 * 119.99629 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00190 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47648 * 89.99738 * 25 23 21
27 27 H 1.48504 * 109.47068 * 209.99831 * 25 23 21
28 28 H 1.48500 * 109.47142 * 329.99522 * 25 23 21
29 29 C 1.47472 * 125.62757 * 175.55762 * 11 9 3
30 30 H 1.09003 * 109.47419 * 65.84401 * 1 2 3
31 31 H 1.09004 * 109.47249 * 185.84377 * 1 2 3
32 32 H 1.09007 * 109.47210 * 305.84231 * 1 2 3
33 33 H 1.08994 * 109.47172 * 240.00741 * 2 1 3
34 34 H 1.09000 * 109.47109 * 119.99794 * 2 1 3
35 35 H 1.09007 * 109.46988 * 53.32139 * 5 3 2
36 36 H 1.09000 * 109.47520 * 173.32279 * 5 3 2
37 37 H 1.08999 * 109.47601 * 56.91974 * 6 5 3
38 38 H 1.09004 * 109.88353 * 59.56634 * 12 11 9
39 39 H 1.09001 * 110.01292 * 298.47012 * 12 11 9
40 40 H 1.09000 * 110.71992 * 219.44658 * 13 12 11
41 41 H 1.08997 * 110.87001 * 96.24018 * 13 12 11
42 42 H 1.00903 * 111.00226 * 325.62557 * 16 14 13
43 43 H 1.09001 * 109.46944 * 299.99824 * 17 16 14
44 44 H 1.09000 * 109.46583 * 60.00181 * 17 16 14
45 45 H 0.97003 * 120.00392 * 0.02562 * 20 18 17
46 46 H 0.97005 * 119.99850 * 180.02562 * 24 23 21
47 47 H 1.08998 * 110.34795 * 85.25147 * 29 11 9
48 48 H 1.09001 * 110.40200 * 322.91264 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 3.1289 1.4429 -0.0482
5 6 1.4754 2.1831 -1.2140
6 6 2.0620 1.5850 -2.4943
7 9 1.4930 2.2149 -3.6064
8 9 3.4475 1.7782 -2.5070
9 6 1.5927 2.1334 1.2625
10 8 0.6071 2.8400 1.2505
11 7 2.2881 1.9660 2.4048
12 6 3.4404 1.0706 2.5831
13 6 3.9230 1.2294 4.0403
14 6 3.3699 2.6231 4.4395
15 1 4.0286 3.4190 4.0922
16 7 3.1624 2.7111 5.8911
17 6 4.3724 3.1972 6.5675
18 6 4.1216 3.2747 8.0514
19 8 3.0414 2.9559 8.5014
20 7 5.0978 3.6983 8.8785
21 6 4.8700 3.7683 10.2286
22 1 3.9081 3.4844 10.6293
23 6 5.8762 4.2055 11.0813
24 7 7.0464 4.5514 10.5937
25 14 5.5658 4.3002 12.9209
26 1 5.9342 3.0076 13.5524
27 1 6.3885 5.3892 13.5063
28 1 4.1282 4.5792 13.1667
29 6 2.0186 2.6509 3.6827
30 1 -0.3634 0.4205 -0.9377
31 1 -0.3634 -1.0223 0.1046
32 1 -0.3634 0.6018 0.8331
33 1 1.8933 -0.5137 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 0.3902 2.0813 -1.2294
36 1 1.7405 3.2386 -1.1514
37 1 1.8436 0.5177 -2.5300
38 1 4.2383 1.3519 1.8957
39 1 3.1420 0.0380 2.4019
40 1 5.0118 1.2181 4.0894
41 1 3.5015 0.4507 4.6760
42 1 2.8691 1.8227 6.2691
43 1 5.1974 2.5117 6.3733
44 1 4.6265 4.1877 6.1900
45 1 5.9617 3.9536 8.5186
46 1 7.7489 4.8562 11.1891
47 1 1.2565 2.1137 4.2473
48 1 1.7050 3.6794 3.5039
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567097279.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:24
Heat of formation + Delta-G solvation = -207.310168 kcal
Electronic energy + Delta-G solvation = -30468.866920 eV
Core-core repulsion = 25806.800967 eV
Total energy + Delta-G solvation = -4662.065953 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.90968 -47.92797 -41.48177 -40.20614 -39.07366 -36.80481 -36.20981 -35.55597
-33.27052 -31.74819 -31.53856 -30.13917 -28.42452 -27.30682 -25.62320 -24.62294
-24.21561 -22.20514 -21.74010 -21.08554 -19.92184 -19.89276 -18.64262 -18.58013
-17.89386 -17.78314 -17.47163 -16.92169 -16.82381 -16.41640 -16.23466 -16.08988
-15.76947 -15.46755 -15.15796 -14.83736 -14.64120 -14.55566 -14.29960 -14.12590
-14.02599 -13.87982 -13.78336 -13.70417 -13.63582 -13.48018 -13.10180 -12.91522
-12.89448 -12.65459 -12.43173 -12.42025 -12.37272 -12.12449 -11.94948 -11.86595
-11.79041 -11.59849 -11.50444 -10.80063 -10.35960 -10.01231 -9.71665 -9.31653
-8.46697 -5.95142 1.38081 1.42345 1.53118 1.54773 1.80330 2.05746
2.29585 2.84498 2.93470 3.20764 3.22129 3.36879 3.41058 3.53969
3.61820 3.68922 3.84768 3.91546 4.00487 4.05177 4.23399 4.25143
4.31678 4.35433 4.37988 4.50297 4.55034 4.59327 4.61736 4.66349
4.78365 4.85243 4.88062 4.92293 5.02584 5.07790 5.11061 5.15782
5.22141 5.40181 5.41449 5.87937 6.08612 6.35973 6.46907 6.60407
7.07146 7.13094 7.56812 8.12240 8.70508
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.029687 B = 0.001626 C = 0.001595
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.955554 B =17217.179871 C =17549.321025
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.116 4.116
3 C -0.096 4.096
4 H 0.121 0.879
5 C -0.156 4.156
6 C 0.262 3.738
7 F -0.220 7.220
8 F -0.214 7.214
9 C 0.531 3.469
10 O -0.582 6.582
11 N -0.616 5.616
12 C 0.101 3.899
13 C -0.158 4.158
14 C 0.082 3.918
15 H 0.102 0.898
16 N -0.675 5.675
17 C 0.069 3.931
18 C 0.436 3.564
19 O -0.625 6.625
20 N -0.572 5.572
21 C -0.334 4.334
22 H 0.078 0.922
23 C -0.012 4.012
24 N -0.919 5.919
25 Si 0.992 3.008
26 H -0.270 1.270
27 H -0.271 1.271
28 H -0.275 1.275
29 C 0.118 3.882
30 H 0.064 0.936
31 H 0.071 0.929
32 H 0.030 0.970
33 H 0.108 0.892
34 H 0.083 0.917
35 H 0.105 0.895
36 H 0.072 0.928
37 H 0.152 0.848
38 H 0.094 0.906
39 H 0.093 0.907
40 H 0.103 0.897
41 H 0.080 0.920
42 H 0.350 0.650
43 H 0.077 0.923
44 H 0.103 0.897
45 H 0.397 0.603
46 H 0.278 0.722
47 H 0.061 0.939
48 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.059 -12.400 -27.585 30.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.153 4.153
3 C -0.117 4.117
4 H 0.139 0.861
5 C -0.194 4.194
6 C 0.209 3.791
7 F -0.201 7.201
8 F -0.196 7.196
9 C 0.321 3.679
10 O -0.462 6.462
11 N -0.350 5.350
12 C -0.021 4.021
13 C -0.198 4.198
14 C -0.029 4.029
15 H 0.120 0.880
16 N -0.307 5.307
17 C -0.063 4.063
18 C 0.224 3.776
19 O -0.512 6.512
20 N -0.210 5.210
21 C -0.464 4.464
22 H 0.096 0.904
23 C -0.212 4.212
24 N -0.560 5.560
25 Si 0.816 3.184
26 H -0.195 1.195
27 H -0.196 1.196
28 H -0.200 1.200
29 C -0.006 4.006
30 H 0.083 0.917
31 H 0.090 0.910
32 H 0.050 0.950
33 H 0.126 0.874
34 H 0.102 0.898
35 H 0.123 0.877
36 H 0.091 0.909
37 H 0.169 0.831
38 H 0.112 0.888
39 H 0.111 0.889
40 H 0.122 0.878
41 H 0.099 0.901
42 H 0.170 0.830
43 H 0.095 0.905
44 H 0.121 0.879
45 H 0.231 0.769
46 H 0.087 0.913
47 H 0.079 0.921
48 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.422 -11.510 -27.304 29.959
hybrid contribution 0.724 0.067 1.030 1.261
sum -3.698 -11.444 -26.274 28.896
Atomic orbital electron populations
1.21926 0.95881 1.02330 1.01882 1.21648 0.96196 0.92151 1.05314
1.21289 1.03494 0.97058 0.89856 0.86097 1.22504 1.03800 1.01130
0.92004 1.22267 0.73779 0.99872 0.83147 1.92970 1.84869 1.85791
1.56482 1.92974 1.32921 1.96921 1.96781 1.20680 0.82026 0.80718
0.84454 1.90711 1.27738 1.41847 1.85871 1.48545 1.32757 1.43866
1.09823 1.22270 0.87759 0.94703 0.97405 1.23406 1.03264 0.97171
0.95955 1.22698 0.95237 0.98254 0.86672 0.88024 1.59821 1.32724
1.35778 1.02359 1.21530 0.92495 1.02744 0.89499 1.20925 0.84568
0.82405 0.89728 1.90501 1.26627 1.55266 1.78781 1.41921 1.14133
1.58390 1.06519 1.19652 0.99983 1.43521 0.83219 0.90415 1.26011
0.94524 0.96056 1.04621 1.69663 1.04004 1.44488 1.37817 0.84945
0.78121 0.78379 0.77002 1.19506 1.19610 1.19999 1.21984 0.97583
0.97284 0.83763 0.91655 0.90974 0.95036 0.87396 0.89835 0.87660
0.90881 0.83091 0.88763 0.88896 0.87812 0.90124 0.83015 0.90491
0.87882 0.76872 0.91298 0.92106 0.92159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.74 9.19 71.98 0.66 -1.08 16
2 C -0.12 -0.77 5.41 30.60 0.17 -0.60 16
3 C -0.10 -1.09 1.87 -11.54 -0.02 -1.11 16
4 H 0.12 0.94 6.97 -2.38 -0.02 0.92 16
5 C -0.16 -2.01 4.06 30.59 0.12 -1.89 16
6 C 0.26 2.60 5.16 71.98 0.37 2.97 16
7 F -0.22 -3.40 17.34 44.97 0.78 -2.62 16
8 F -0.21 -2.86 16.83 44.97 0.76 -2.10 16
9 C 0.53 10.77 6.00 87.66 0.53 11.29 16
10 O -0.58 -17.12 15.89 -3.03 -0.05 -17.17 16
11 N -0.62 -11.24 3.33 -811.68 -2.70 -13.94 16
12 C 0.10 1.06 6.23 86.73 0.54 1.60 16
13 C -0.16 -2.10 6.56 31.79 0.21 -1.89 16
14 C 0.08 1.68 3.34 46.31 0.15 1.83 16
15 H 0.10 1.95 7.87 -2.39 -0.02 1.93 16
16 N -0.67 -19.45 6.02 -488.39 -2.94 -22.38 16
17 C 0.07 2.17 6.05 85.56 0.52 2.69 16
18 C 0.44 20.04 7.82 87.66 0.69 20.73 16
19 O -0.63 -34.06 15.78 -3.04 -0.05 -34.11 16
20 N -0.57 -28.61 5.29 -306.99 -1.62 -30.23 16
21 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16
22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16
23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16
24 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16
25 Si 0.99 42.53 29.55 68.60 2.03 44.56 16
26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16
28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
29 C 0.12 2.73 6.59 86.85 0.57 3.31 16
30 H 0.06 0.61 6.57 -2.39 -0.02 0.59 16
31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.03 0.55 6.70 -2.38 -0.02 0.54 16
33 H 0.11 0.08 6.68 -2.39 -0.02 0.06 16
34 H 0.08 0.47 6.70 -2.39 -0.02 0.46 16
35 H 0.11 1.47 6.10 -2.38 -0.01 1.45 16
36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.15 0.32 6.55 -2.39 -0.02 0.31 16
38 H 0.09 0.62 7.74 -2.38 -0.02 0.60 16
39 H 0.09 0.62 6.82 -2.39 -0.02 0.61 16
40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
41 H 0.08 1.13 7.77 -2.39 -0.02 1.12 16
42 H 0.35 10.48 7.95 -89.69 -0.71 9.77 16
43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
44 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16
45 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16
46 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16
47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
48 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16
Total: -1.00 -75.73 392.52 1.84 -73.89
By element:
Atomic # 1 Polarization: 33.29 SS G_CDS: -0.43 Total: 32.86 kcal
Atomic # 6 Polarization: 13.94 SS G_CDS: 5.79 Total: 19.73 kcal
Atomic # 7 Polarization: -108.06 SS G_CDS: -6.98 Total: -115.04 kcal
Atomic # 8 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.28 kcal
Atomic # 9 Polarization: -6.26 SS G_CDS: 1.54 Total: -4.72 kcal
Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal
Total: -75.73 1.84 -73.89 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567097279.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -133.420 kcal
(2) G-P(sol) polarization free energy of solvation -75.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal
(6) G-S(sol) free energy of system = (1) + (5) -207.310 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds