Wall clock time and date at job start Wed Apr 1 2020 04:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46528 * 2 1 4 4 H 1.09004 * 109.46077 * 182.68735 * 3 2 1 5 5 C 1.52993 * 109.47499 * 302.68664 * 3 2 1 6 6 C 1.53001 * 109.47133 * 293.32672 * 5 3 2 7 7 F 1.39903 * 109.46960 * 176.92247 * 6 5 3 8 8 F 1.39903 * 109.47061 * 296.91917 * 6 5 3 9 9 C 1.50696 * 109.46910 * 62.69239 * 3 2 1 10 10 O 1.21281 * 119.99621 * 262.12370 * 9 3 2 11 11 N 1.34778 * 120.00200 * 82.12912 * 9 3 2 12 12 C 1.47015 * 125.64825 * 355.55059 * 11 9 3 13 13 C 1.54328 * 107.27346 * 178.97995 * 12 11 9 14 14 C 1.55164 * 102.93828 * 337.80763 * 13 12 11 15 15 H 1.08994 * 111.00577 * 277.39071 * 14 13 12 16 16 N 1.46901 * 111.00164 * 153.57702 * 14 13 12 17 17 C 1.46901 * 111.00040 * 89.58052 * 16 14 13 18 18 C 1.50702 * 109.46757 * 179.97438 * 17 16 14 19 19 O 1.21284 * 120.00289 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99516 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00232 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99478 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00608 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99629 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00190 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47648 * 89.99738 * 25 23 21 27 27 H 1.48504 * 109.47068 * 209.99831 * 25 23 21 28 28 H 1.48500 * 109.47142 * 329.99522 * 25 23 21 29 29 C 1.47472 * 125.62757 * 175.55762 * 11 9 3 30 30 H 1.09003 * 109.47419 * 65.84401 * 1 2 3 31 31 H 1.09004 * 109.47249 * 185.84377 * 1 2 3 32 32 H 1.09007 * 109.47210 * 305.84231 * 1 2 3 33 33 H 1.08994 * 109.47172 * 240.00741 * 2 1 3 34 34 H 1.09000 * 109.47109 * 119.99794 * 2 1 3 35 35 H 1.09007 * 109.46988 * 53.32139 * 5 3 2 36 36 H 1.09000 * 109.47520 * 173.32279 * 5 3 2 37 37 H 1.08999 * 109.47601 * 56.91974 * 6 5 3 38 38 H 1.09004 * 109.88353 * 59.56634 * 12 11 9 39 39 H 1.09001 * 110.01292 * 298.47012 * 12 11 9 40 40 H 1.09000 * 110.71992 * 219.44658 * 13 12 11 41 41 H 1.08997 * 110.87001 * 96.24018 * 13 12 11 42 42 H 1.00903 * 111.00226 * 325.62557 * 16 14 13 43 43 H 1.09001 * 109.46944 * 299.99824 * 17 16 14 44 44 H 1.09000 * 109.46583 * 60.00181 * 17 16 14 45 45 H 0.97003 * 120.00392 * 0.02562 * 20 18 17 46 46 H 0.97005 * 119.99850 * 180.02562 * 24 23 21 47 47 H 1.08998 * 110.34795 * 85.25147 * 29 11 9 48 48 H 1.09001 * 110.40200 * 322.91264 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1289 1.4429 -0.0482 5 6 1.4754 2.1831 -1.2140 6 6 2.0620 1.5850 -2.4943 7 9 1.4930 2.2149 -3.6064 8 9 3.4475 1.7782 -2.5070 9 6 1.5927 2.1334 1.2625 10 8 0.6071 2.8400 1.2505 11 7 2.2881 1.9660 2.4048 12 6 3.4404 1.0706 2.5831 13 6 3.9230 1.2294 4.0403 14 6 3.3699 2.6231 4.4395 15 1 4.0286 3.4190 4.0922 16 7 3.1624 2.7111 5.8911 17 6 4.3724 3.1972 6.5675 18 6 4.1216 3.2747 8.0514 19 8 3.0414 2.9559 8.5014 20 7 5.0978 3.6983 8.8785 21 6 4.8700 3.7683 10.2286 22 1 3.9081 3.4844 10.6293 23 6 5.8762 4.2055 11.0813 24 7 7.0464 4.5514 10.5937 25 14 5.5658 4.3002 12.9209 26 1 5.9342 3.0076 13.5524 27 1 6.3885 5.3892 13.5063 28 1 4.1282 4.5792 13.1667 29 6 2.0186 2.6509 3.6827 30 1 -0.3634 0.4205 -0.9377 31 1 -0.3634 -1.0223 0.1046 32 1 -0.3634 0.6018 0.8331 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.3902 2.0813 -1.2294 36 1 1.7405 3.2386 -1.1514 37 1 1.8436 0.5177 -2.5300 38 1 4.2383 1.3519 1.8957 39 1 3.1420 0.0380 2.4019 40 1 5.0118 1.2181 4.0894 41 1 3.5015 0.4507 4.6760 42 1 2.8691 1.8227 6.2691 43 1 5.1974 2.5117 6.3733 44 1 4.6265 4.1877 6.1900 45 1 5.9617 3.9536 8.5186 46 1 7.7489 4.8562 11.1891 47 1 1.2565 2.1137 4.2473 48 1 1.7050 3.6794 3.5039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567097279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:24 Heat of formation + Delta-G solvation = -207.310168 kcal Electronic energy + Delta-G solvation = -30468.866920 eV Core-core repulsion = 25806.800967 eV Total energy + Delta-G solvation = -4662.065953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90968 -47.92797 -41.48177 -40.20614 -39.07366 -36.80481 -36.20981 -35.55597 -33.27052 -31.74819 -31.53856 -30.13917 -28.42452 -27.30682 -25.62320 -24.62294 -24.21561 -22.20514 -21.74010 -21.08554 -19.92184 -19.89276 -18.64262 -18.58013 -17.89386 -17.78314 -17.47163 -16.92169 -16.82381 -16.41640 -16.23466 -16.08988 -15.76947 -15.46755 -15.15796 -14.83736 -14.64120 -14.55566 -14.29960 -14.12590 -14.02599 -13.87982 -13.78336 -13.70417 -13.63582 -13.48018 -13.10180 -12.91522 -12.89448 -12.65459 -12.43173 -12.42025 -12.37272 -12.12449 -11.94948 -11.86595 -11.79041 -11.59849 -11.50444 -10.80063 -10.35960 -10.01231 -9.71665 -9.31653 -8.46697 -5.95142 1.38081 1.42345 1.53118 1.54773 1.80330 2.05746 2.29585 2.84498 2.93470 3.20764 3.22129 3.36879 3.41058 3.53969 3.61820 3.68922 3.84768 3.91546 4.00487 4.05177 4.23399 4.25143 4.31678 4.35433 4.37988 4.50297 4.55034 4.59327 4.61736 4.66349 4.78365 4.85243 4.88062 4.92293 5.02584 5.07790 5.11061 5.15782 5.22141 5.40181 5.41449 5.87937 6.08612 6.35973 6.46907 6.60407 7.07146 7.13094 7.56812 8.12240 8.70508 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029687 B = 0.001626 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.955554 B =17217.179871 C =17549.321025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.096 4.096 4 H 0.121 0.879 5 C -0.156 4.156 6 C 0.262 3.738 7 F -0.220 7.220 8 F -0.214 7.214 9 C 0.531 3.469 10 O -0.582 6.582 11 N -0.616 5.616 12 C 0.101 3.899 13 C -0.158 4.158 14 C 0.082 3.918 15 H 0.102 0.898 16 N -0.675 5.675 17 C 0.069 3.931 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 C 0.118 3.882 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.350 0.650 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -12.400 -27.585 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.153 4.153 3 C -0.117 4.117 4 H 0.139 0.861 5 C -0.194 4.194 6 C 0.209 3.791 7 F -0.201 7.201 8 F -0.196 7.196 9 C 0.321 3.679 10 O -0.462 6.462 11 N -0.350 5.350 12 C -0.021 4.021 13 C -0.198 4.198 14 C -0.029 4.029 15 H 0.120 0.880 16 N -0.307 5.307 17 C -0.063 4.063 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.169 0.831 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.170 0.830 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.422 -11.510 -27.304 29.959 hybrid contribution 0.724 0.067 1.030 1.261 sum -3.698 -11.444 -26.274 28.896 Atomic orbital electron populations 1.21926 0.95881 1.02330 1.01882 1.21648 0.96196 0.92151 1.05314 1.21289 1.03494 0.97058 0.89856 0.86097 1.22504 1.03800 1.01130 0.92004 1.22267 0.73779 0.99872 0.83147 1.92970 1.84869 1.85791 1.56482 1.92974 1.32921 1.96921 1.96781 1.20680 0.82026 0.80718 0.84454 1.90711 1.27738 1.41847 1.85871 1.48545 1.32757 1.43866 1.09823 1.22270 0.87759 0.94703 0.97405 1.23406 1.03264 0.97171 0.95955 1.22698 0.95237 0.98254 0.86672 0.88024 1.59821 1.32724 1.35778 1.02359 1.21530 0.92495 1.02744 0.89499 1.20925 0.84568 0.82405 0.89728 1.90501 1.26627 1.55266 1.78781 1.41921 1.14133 1.58390 1.06519 1.19652 0.99983 1.43521 0.83219 0.90415 1.26011 0.94524 0.96056 1.04621 1.69663 1.04004 1.44488 1.37817 0.84945 0.78121 0.78379 0.77002 1.19506 1.19610 1.19999 1.21984 0.97583 0.97284 0.83763 0.91655 0.90974 0.95036 0.87396 0.89835 0.87660 0.90881 0.83091 0.88763 0.88896 0.87812 0.90124 0.83015 0.90491 0.87882 0.76872 0.91298 0.92106 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.12 -0.77 5.41 30.60 0.17 -0.60 16 3 C -0.10 -1.09 1.87 -11.54 -0.02 -1.11 16 4 H 0.12 0.94 6.97 -2.38 -0.02 0.92 16 5 C -0.16 -2.01 4.06 30.59 0.12 -1.89 16 6 C 0.26 2.60 5.16 71.98 0.37 2.97 16 7 F -0.22 -3.40 17.34 44.97 0.78 -2.62 16 8 F -0.21 -2.86 16.83 44.97 0.76 -2.10 16 9 C 0.53 10.77 6.00 87.66 0.53 11.29 16 10 O -0.58 -17.12 15.89 -3.03 -0.05 -17.17 16 11 N -0.62 -11.24 3.33 -811.68 -2.70 -13.94 16 12 C 0.10 1.06 6.23 86.73 0.54 1.60 16 13 C -0.16 -2.10 6.56 31.79 0.21 -1.89 16 14 C 0.08 1.68 3.34 46.31 0.15 1.83 16 15 H 0.10 1.95 7.87 -2.39 -0.02 1.93 16 16 N -0.67 -19.45 6.02 -488.39 -2.94 -22.38 16 17 C 0.07 2.17 6.05 85.56 0.52 2.69 16 18 C 0.44 20.04 7.82 87.66 0.69 20.73 16 19 O -0.63 -34.06 15.78 -3.04 -0.05 -34.11 16 20 N -0.57 -28.61 5.29 -306.99 -1.62 -30.23 16 21 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 25 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 C 0.12 2.73 6.59 86.85 0.57 3.31 16 30 H 0.06 0.61 6.57 -2.39 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.03 0.55 6.70 -2.38 -0.02 0.54 16 33 H 0.11 0.08 6.68 -2.39 -0.02 0.06 16 34 H 0.08 0.47 6.70 -2.39 -0.02 0.46 16 35 H 0.11 1.47 6.10 -2.38 -0.01 1.45 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.15 0.32 6.55 -2.39 -0.02 0.31 16 38 H 0.09 0.62 7.74 -2.38 -0.02 0.60 16 39 H 0.09 0.62 6.82 -2.39 -0.02 0.61 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.13 7.77 -2.39 -0.02 1.12 16 42 H 0.35 10.48 7.95 -89.69 -0.71 9.77 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16 45 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 46 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 Total: -1.00 -75.73 392.52 1.84 -73.89 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.43 Total: 32.86 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.79 Total: 19.73 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.98 Total: -115.04 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.28 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 1.54 Total: -4.72 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -75.73 1.84 -73.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567097279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.420 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds