Wall clock time and date at job start Wed Apr 1 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 H 1.08991 * 109.46698 * 177.94151 * 3 2 1 5 5 C 1.50701 * 109.46925 * 57.94569 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99723 * 5 3 2 7 7 C 1.37881 * 120.00174 * 59.99670 * 5 3 2 8 8 N 1.31512 * 119.99554 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47227 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47131 * 120.00251 * 9 7 5 12 12 H 1.48507 * 109.46657 * 240.00341 * 9 7 5 13 13 N 1.46895 * 109.47034 * 297.94366 * 3 2 1 14 14 C 1.46896 * 111.00265 * 273.74573 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.96867 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.52997 * 109.47426 * 179.97438 * 15 14 13 19 19 O 1.42903 * 109.47279 * 184.99981 * 18 15 14 20 20 C 1.35846 * 116.99982 * 180.02562 * 19 18 15 21 21 C 1.38593 * 120.11514 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.06075 * 179.97438 * 21 20 19 23 23 C 1.38388 * 120.29528 * 0.02562 * 22 21 20 24 24 C 1.38011 * 120.23264 * 359.97438 * 23 22 21 25 25 C 1.39270 * 119.93836 * 359.74891 * 24 23 22 26 26 C 1.48398 * 120.15042 * 180.27815 * 25 24 23 27 27 N 1.34065 * 126.67722 * 179.97438 * 26 25 24 28 28 N 1.28984 * 107.26489 * 179.83098 * 27 26 25 29 29 N 1.28729 * 108.95160 * 0.43097 * 28 27 26 30 30 H 0.96995 * 125.34045 * 179.74068 * 29 28 27 31 31 N 1.28875 * 109.31907 * 359.72578 * 29 28 27 32 32 H 1.09002 * 109.47321 * 174.43793 * 1 2 3 33 33 H 1.08998 * 109.47304 * 54.44151 * 1 2 3 34 34 H 1.09005 * 109.47282 * 294.43698 * 1 2 3 35 35 H 1.09000 * 109.46838 * 120.00301 * 2 1 3 36 36 H 1.09000 * 109.46463 * 240.00092 * 2 1 3 37 37 H 0.97006 * 119.99248 * 180.02562 * 8 7 5 38 38 H 1.00901 * 110.99934 * 149.79362 * 13 3 2 39 39 H 1.09006 * 109.46730 * 294.96677 * 14 13 3 40 40 H 1.08996 * 109.47238 * 54.96140 * 14 13 3 41 41 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 42 42 H 1.08999 * 109.47062 * 304.99927 * 18 15 14 43 43 H 1.09001 * 109.46808 * 65.00128 * 18 15 14 44 44 H 1.08000 * 119.97181 * 359.95370 * 21 20 19 45 45 H 1.07997 * 119.85529 * 179.97438 * 22 21 20 46 46 H 1.07991 * 119.88621 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.03387 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0369 5 6 1.4965 2.1674 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7114 2.4726 8 7 2.5378 0.6435 2.6314 9 14 1.1125 2.6096 3.9652 10 1 0.3020 3.7714 3.5195 11 1 0.2608 1.6854 4.7560 12 1 2.2394 3.0865 4.8067 13 7 1.5913 2.1205 -1.2235 14 6 2.5289 1.8855 -2.3296 15 6 1.9672 2.4993 -3.6135 16 1 1.8309 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9440 2.2552 -4.7655 19 8 2.4767 2.9272 -5.9369 20 6 3.2344 2.8106 -7.0584 21 6 4.4032 2.0663 -7.0336 22 6 5.1728 1.9480 -8.1751 23 6 4.7827 2.5710 -9.3477 24 6 3.6211 3.3152 -9.3860 25 6 2.8351 3.4361 -8.2426 26 6 1.5819 4.2300 -8.2802 27 7 0.7310 4.4319 -7.2640 28 7 -0.2248 5.1760 -7.7071 29 7 -0.0106 5.4361 -8.9495 30 1 -0.5842 5.9743 -9.5170 31 7 1.0858 4.8695 -9.3208 32 1 -0.3634 -1.0228 -0.0996 33 1 -0.3634 0.5976 -0.8360 34 1 -0.3634 0.4252 0.9356 35 1 1.8933 -0.5139 0.8900 36 1 1.8932 -0.5138 -0.8900 37 1 2.7418 0.3225 3.5238 38 1 1.4619 3.1082 -1.0628 39 1 3.4888 2.3464 -2.0963 40 1 2.6652 0.8131 -2.4689 41 1 0.7545 0.9390 -4.0565 42 1 3.9279 2.6384 -4.4949 43 1 3.0125 1.1854 -4.9632 44 1 4.7130 1.5785 -6.1212 45 1 6.0832 1.3675 -8.1520 46 1 5.3894 2.4746 -10.2358 47 1 3.3195 3.7997 -10.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:33 Heat of formation + Delta-G solvation = 65.199237 kcal Electronic energy + Delta-G solvation = -29967.939643 eV Core-core repulsion = 25768.379770 eV Total energy + Delta-G solvation = -4199.559872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47869 -40.40239 -38.20643 -36.94148 -35.53427 -34.46384 -33.72502 -32.57221 -31.08610 -30.83551 -30.38251 -29.13758 -26.55261 -25.06945 -24.54853 -24.26035 -23.07369 -22.09338 -21.94253 -21.08410 -19.39836 -19.02859 -18.20086 -17.19783 -16.86046 -16.58374 -16.33330 -16.23241 -15.31525 -15.01784 -14.92023 -14.62532 -14.36429 -13.95254 -13.78949 -13.72693 -13.33117 -13.08483 -12.87184 -12.75974 -12.31321 -12.00971 -11.87407 -11.76991 -11.59952 -11.39646 -11.36758 -11.10385 -11.09422 -11.07525 -10.94126 -10.74593 -10.56039 -10.31291 -10.08026 -9.94205 -9.50880 -9.28361 -9.14098 -8.76227 -8.46349 -8.36331 -7.20590 -6.01597 -4.06273 0.50215 1.09859 1.16559 2.14217 2.25478 2.95926 3.29549 3.37971 3.42587 3.51370 3.57580 4.08177 4.40793 4.53075 4.62157 4.66980 4.82871 4.84927 5.05405 5.06578 5.17086 5.23500 5.29548 5.31957 5.41767 5.51993 5.57727 5.58949 5.77544 5.96284 6.02349 6.11181 6.15381 6.28165 6.34473 6.42494 6.55241 6.74466 6.89226 7.21317 7.26916 7.31174 7.52131 7.77315 7.81405 7.84746 8.06188 8.13653 8.26938 8.38982 8.67590 9.03150 9.58586 11.04567 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002177 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.840552 B =12859.489009 C =13922.426866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.673 5.673 14 C 0.034 3.966 15 C 0.120 3.880 16 H 0.104 0.896 17 O -0.532 6.532 18 C 0.023 3.977 19 O -0.272 6.272 20 C 0.176 3.824 21 C -0.216 4.216 22 C -0.057 4.057 23 C -0.168 4.168 24 C -0.042 4.042 25 C -0.059 4.059 26 C 0.224 3.776 27 N -0.233 5.233 28 N -0.053 5.053 29 N -0.235 5.235 30 H 0.472 0.528 31 N -0.305 5.305 32 H 0.011 0.989 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.007 0.993 37 H 0.259 0.741 38 H 0.333 0.667 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.367 0.633 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 4.472 -26.817 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.097 4.097 15 C 0.060 3.940 16 H 0.121 0.879 17 O -0.335 6.335 18 C -0.054 4.054 19 O -0.183 6.183 20 C 0.126 3.874 21 C -0.235 4.235 22 C -0.075 4.075 23 C -0.186 4.186 24 C -0.062 4.062 25 C -0.064 4.064 26 C -0.056 4.056 27 N -0.106 5.106 28 N -0.049 5.049 29 N -0.080 5.080 30 H 0.326 0.674 31 N -0.158 5.158 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.150 0.850 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.213 0.787 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.518 4.831 -26.452 27.007 hybrid contribution 1.007 0.381 0.612 1.238 sum 3.525 5.212 -25.840 26.595 Atomic orbital electron populations 1.21447 0.97344 0.97134 1.01814 1.21412 0.95255 0.98112 0.99070 1.19140 0.93113 0.91722 0.85187 0.98394 1.21230 1.31453 1.11947 0.90291 0.92172 1.24883 0.95097 0.95029 0.98883 1.69900 1.37600 1.23152 1.22236 0.86521 0.78730 0.79831 0.82835 1.19718 1.20999 1.21210 1.60519 1.46656 1.16460 1.06788 1.22460 0.94486 1.00408 0.92323 1.21875 0.83312 0.99373 0.89481 0.87858 1.86683 1.29272 1.25063 1.92505 1.23827 0.99540 0.96961 0.85026 1.86414 1.46711 1.68529 1.16628 1.19002 0.89675 0.92223 0.86520 1.21277 0.96377 1.04985 1.00887 1.21135 0.98340 0.96146 0.91923 1.20954 0.97862 1.01020 0.98787 1.20991 0.92968 0.95919 0.96338 1.16525 0.92796 1.03738 0.93296 1.23419 0.97497 0.99002 0.85650 1.76448 0.99282 1.10679 1.24161 1.79046 1.19808 1.11665 0.94356 1.47726 1.16110 1.35051 1.09133 0.67412 1.74831 1.00221 1.14158 1.26577 0.96982 0.92989 0.93050 0.89781 0.97395 0.93062 0.84961 0.95502 0.91381 0.78734 0.91140 0.91546 0.84545 0.85263 0.85218 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.46 37.16 0.35 -2.37 16 2 C -0.10 -2.39 5.58 -26.73 -0.15 -2.54 16 3 C 0.22 5.25 2.30 -68.87 -0.16 5.10 16 4 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 5 C -0.51 -13.62 7.33 -34.44 -0.25 -13.88 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.67 -13.81 5.38 -107.96 -0.58 -14.39 16 14 C 0.03 0.56 5.12 -3.83 -0.02 0.54 16 15 C 0.12 1.74 3.49 -26.74 -0.09 1.65 16 16 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 17 O -0.53 -8.62 13.17 -40.06 -0.53 -9.14 16 18 C 0.02 0.27 4.38 37.16 0.16 0.43 16 19 O -0.27 -3.71 8.45 -24.08 -0.20 -3.91 16 20 C 0.18 2.09 6.69 -38.88 -0.26 1.83 16 21 C -0.22 -2.04 9.03 -39.47 -0.36 -2.39 16 22 C -0.06 -0.43 10.03 -39.55 -0.40 -0.83 16 23 C -0.17 -1.23 10.03 -39.61 -0.40 -1.63 16 24 C -0.04 -0.37 9.70 -39.28 -0.38 -0.75 16 25 C -0.06 -0.69 5.89 -104.76 -0.62 -1.31 16 26 C 0.22 2.89 7.91 -156.30 -1.24 1.65 16 27 N -0.23 -3.47 11.06 32.15 0.36 -3.11 16 28 N -0.05 -0.67 13.47 60.35 0.81 0.14 16 29 N -0.24 -2.05 7.90 60.35 0.48 -1.58 16 30 H 0.47 1.68 8.96 -340.37 -3.05 -1.37 16 31 N -0.31 -3.24 12.08 32.16 0.39 -2.85 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 34 H 0.05 1.26 7.37 -51.93 -0.38 0.87 16 35 H 0.08 2.24 6.13 -51.93 -0.32 1.92 16 36 H 0.01 0.16 7.43 -51.93 -0.39 -0.22 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.33 6.91 8.25 -39.29 -0.32 6.58 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.10 7.40 -51.93 -0.38 0.72 16 41 H 0.37 4.85 9.05 45.56 0.41 5.26 16 42 H 0.07 0.72 7.66 -51.93 -0.40 0.33 16 43 H 0.07 0.67 7.66 -51.93 -0.40 0.28 16 44 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.14 1.00 7.88 -52.49 -0.41 0.58 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -33.34 391.82 -10.08 -43.42 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.42 Total: 6.61 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.90 Total: -12.89 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 2.08 Total: -46.16 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.73 Total: -13.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.34 -10.08 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.618 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds