Wall clock time and date at job start Wed Apr 1 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 H 1.08991 * 109.46698 * 177.94151 * 3 2 1 5 5 C 1.50701 * 109.46925 * 57.94569 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99723 * 5 3 2 7 7 C 1.37881 * 120.00174 * 59.99670 * 5 3 2 8 8 N 1.31512 * 119.99554 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47227 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47131 * 120.00251 * 9 7 5 12 12 H 1.48507 * 109.46657 * 240.00341 * 9 7 5 13 13 N 1.46895 * 109.47034 * 297.94366 * 3 2 1 14 14 C 1.46896 * 111.00265 * 273.74573 * 13 3 2 15 15 C 1.52994 * 109.47508 * 174.96867 * 14 13 3 16 16 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 17 17 O 1.42900 * 109.47160 * 300.00099 * 15 14 13 18 18 C 1.52997 * 109.47426 * 179.97438 * 15 14 13 19 19 O 1.42903 * 109.47279 * 184.99981 * 18 15 14 20 20 C 1.35846 * 116.99982 * 180.02562 * 19 18 15 21 21 C 1.38593 * 120.11514 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.06075 * 179.97438 * 21 20 19 23 23 C 1.38388 * 120.29528 * 0.02562 * 22 21 20 24 24 C 1.38011 * 120.23264 * 359.97438 * 23 22 21 25 25 C 1.39270 * 119.93836 * 359.74891 * 24 23 22 26 26 C 1.48398 * 120.15042 * 180.27815 * 25 24 23 27 27 N 1.34065 * 126.67722 * 179.97438 * 26 25 24 28 28 N 1.28984 * 107.26489 * 179.83098 * 27 26 25 29 29 N 1.28729 * 108.95160 * 0.43097 * 28 27 26 30 30 H 0.96995 * 125.34045 * 179.74068 * 29 28 27 31 31 N 1.28875 * 109.31907 * 359.72578 * 29 28 27 32 32 H 1.09002 * 109.47321 * 174.43793 * 1 2 3 33 33 H 1.08998 * 109.47304 * 54.44151 * 1 2 3 34 34 H 1.09005 * 109.47282 * 294.43698 * 1 2 3 35 35 H 1.09000 * 109.46838 * 120.00301 * 2 1 3 36 36 H 1.09000 * 109.46463 * 240.00092 * 2 1 3 37 37 H 0.97006 * 119.99248 * 180.02562 * 8 7 5 38 38 H 1.00901 * 110.99934 * 149.79362 * 13 3 2 39 39 H 1.09006 * 109.46730 * 294.96677 * 14 13 3 40 40 H 1.08996 * 109.47238 * 54.96140 * 14 13 3 41 41 H 0.96703 * 113.99804 * 299.99751 * 17 15 14 42 42 H 1.08999 * 109.47062 * 304.99927 * 18 15 14 43 43 H 1.09001 * 109.46808 * 65.00128 * 18 15 14 44 44 H 1.08000 * 119.97181 * 359.95370 * 21 20 19 45 45 H 1.07997 * 119.85529 * 179.97438 * 22 21 20 46 46 H 1.07991 * 119.88621 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.03387 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0369 5 6 1.4965 2.1674 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7114 2.4726 8 7 2.5378 0.6435 2.6314 9 14 1.1125 2.6096 3.9652 10 1 0.3020 3.7714 3.5195 11 1 0.2608 1.6854 4.7560 12 1 2.2394 3.0865 4.8067 13 7 1.5913 2.1205 -1.2235 14 6 2.5289 1.8855 -2.3296 15 6 1.9672 2.4993 -3.6135 16 1 1.8309 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9440 2.2552 -4.7655 19 8 2.4767 2.9272 -5.9369 20 6 3.2344 2.8106 -7.0584 21 6 4.4032 2.0663 -7.0336 22 6 5.1728 1.9480 -8.1751 23 6 4.7827 2.5710 -9.3477 24 6 3.6211 3.3152 -9.3860 25 6 2.8351 3.4361 -8.2426 26 6 1.5819 4.2300 -8.2802 27 7 0.7310 4.4319 -7.2640 28 7 -0.2248 5.1760 -7.7071 29 7 -0.0106 5.4361 -8.9495 30 1 -0.5842 5.9743 -9.5170 31 7 1.0858 4.8695 -9.3208 32 1 -0.3634 -1.0228 -0.0996 33 1 -0.3634 0.5976 -0.8360 34 1 -0.3634 0.4252 0.9356 35 1 1.8933 -0.5139 0.8900 36 1 1.8932 -0.5138 -0.8900 37 1 2.7418 0.3225 3.5238 38 1 1.4619 3.1082 -1.0628 39 1 3.4888 2.3464 -2.0963 40 1 2.6652 0.8131 -2.4689 41 1 0.7545 0.9390 -4.0565 42 1 3.9279 2.6384 -4.4949 43 1 3.0125 1.1854 -4.9632 44 1 4.7130 1.5785 -6.1212 45 1 6.0832 1.3675 -8.1520 46 1 5.3894 2.4746 -10.2358 47 1 3.3195 3.7997 -10.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:32 Heat of formation + Delta-G solvation = 40.123350 kcal Electronic energy + Delta-G solvation = -29969.027015 eV Core-core repulsion = 25768.379770 eV Total energy + Delta-G solvation = -4200.647244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.34663 -41.18650 -39.25958 -38.14267 -37.09138 -35.32724 -34.55421 -34.37419 -32.73363 -31.63862 -31.37735 -30.28060 -28.27968 -26.13066 -25.62193 -25.29951 -24.85663 -23.09979 -22.72102 -22.11289 -20.90504 -20.21201 -19.02493 -18.41857 -18.06459 -17.67498 -17.50146 -17.13228 -16.84571 -16.27176 -16.05753 -15.65413 -15.30102 -15.17847 -15.12323 -15.05309 -14.67087 -14.46171 -13.92805 -13.87007 -13.72450 -13.43372 -13.17220 -12.95898 -12.83297 -12.60724 -12.50102 -12.42174 -12.29129 -12.26712 -12.00398 -11.97224 -11.92604 -11.85083 -11.75041 -11.53523 -11.31368 -10.83749 -10.71539 -10.51331 -9.81836 -9.10664 -8.91730 -8.09008 -6.19819 -0.23073 0.27192 0.46070 1.40230 1.40923 1.43604 1.50352 1.54019 2.08968 2.43866 2.77664 2.83526 3.20078 3.26034 3.47992 3.65666 3.91132 3.98333 3.99777 4.17228 4.19298 4.29976 4.36342 4.44973 4.46495 4.51104 4.55578 4.65511 4.66760 4.77998 4.84634 4.96052 4.99369 5.11441 5.29357 5.34202 5.41677 5.42604 5.53578 5.59723 5.68904 5.74051 5.81749 5.85184 5.94114 6.30849 6.42881 6.51499 6.81780 6.97224 7.06708 7.24793 7.48728 8.96173 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002177 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.840552 B =12859.489009 C =13922.426866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.095 4.095 3 C 0.223 3.777 4 H -0.032 1.032 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.674 5.674 14 C 0.039 3.961 15 C 0.131 3.869 16 H 0.087 0.913 17 O -0.553 6.553 18 C 0.030 3.970 19 O -0.298 6.298 20 C 0.150 3.850 21 C -0.221 4.221 22 C -0.052 4.052 23 C -0.159 4.159 24 C -0.044 4.044 25 C -0.085 4.085 26 C 0.212 3.788 27 N -0.276 5.276 28 N -0.072 5.072 29 N -0.205 5.205 30 H 0.492 0.508 31 N -0.298 5.298 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.260 0.740 38 H 0.330 0.670 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.379 0.621 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 4.238 -28.895 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.134 4.134 3 C 0.114 3.886 4 H -0.014 1.014 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.304 5.304 14 C -0.091 4.091 15 C 0.071 3.929 16 H 0.105 0.895 17 O -0.359 6.359 18 C -0.045 4.045 19 O -0.209 6.209 20 C 0.101 3.899 21 C -0.240 4.240 22 C -0.071 4.071 23 C -0.177 4.177 24 C -0.064 4.064 25 C -0.089 4.089 26 C -0.068 4.068 27 N -0.148 5.148 28 N -0.067 5.067 29 N -0.056 5.056 30 H 0.350 0.650 31 N -0.152 5.152 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.146 0.854 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.226 0.774 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.180 0.820 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.460 4.607 -28.554 29.130 hybrid contribution 0.747 0.478 1.085 1.401 sum 4.207 5.085 -27.469 28.251 Atomic orbital electron populations 1.21302 0.96300 0.98353 1.00529 1.21287 0.96044 0.97565 0.98501 1.18923 0.91102 0.92318 0.86234 1.01425 1.21486 1.31229 1.11889 0.91510 0.92871 1.25571 0.95414 0.95729 1.01370 1.70016 1.38510 1.24210 1.22732 0.85613 0.78140 0.78766 0.79755 1.19438 1.20787 1.20771 1.60442 1.47800 1.15947 1.06244 1.22476 0.93914 1.01016 0.91741 1.21643 0.83412 0.98067 0.89789 0.89519 1.86645 1.30369 1.26269 1.92595 1.23652 0.98843 0.98076 0.83976 1.86354 1.47873 1.69301 1.17404 1.19260 0.90759 0.93824 0.86080 1.21494 0.95717 1.04570 1.02200 1.21545 0.98817 0.95560 0.91173 1.21365 0.97132 0.99324 0.99860 1.21227 0.93182 0.96088 0.95879 1.16855 0.93095 1.04598 0.94363 1.23783 0.97993 0.99423 0.85556 1.76414 1.00453 1.12233 1.25742 1.78957 1.19885 1.12219 0.95629 1.47779 1.15572 1.33717 1.08484 0.64960 1.74797 1.00467 1.13984 1.25906 0.94766 0.92714 0.95440 0.92617 0.95580 0.93047 0.85351 0.94996 0.90747 0.77366 0.89681 0.89716 0.83455 0.82224 0.82049 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 9.46 71.98 0.68 -4.14 16 2 C -0.10 -4.56 5.58 30.60 0.17 -4.39 16 3 C 0.22 10.99 2.30 44.17 0.10 11.09 16 4 H -0.03 -1.73 7.84 -2.39 -0.02 -1.75 16 5 C -0.52 -28.30 7.33 25.60 0.19 -28.11 16 6 H 0.05 2.89 7.60 -2.91 -0.02 2.87 16 7 C 0.02 1.00 5.30 84.66 0.45 1.45 16 8 N -0.91 -52.10 11.34 21.45 0.24 -51.86 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.67 -27.86 5.38 -495.49 -2.66 -30.53 16 14 C 0.04 1.26 5.12 86.30 0.44 1.70 16 15 C 0.13 3.80 3.49 30.59 0.11 3.90 16 16 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 17 O -0.55 -17.92 13.17 -144.36 -1.90 -19.82 16 18 C 0.03 0.69 4.38 71.98 0.31 1.01 16 19 O -0.30 -8.15 8.45 -87.20 -0.74 -8.88 16 20 C 0.15 3.48 6.69 22.72 0.15 3.63 16 21 C -0.22 -3.73 9.03 22.34 0.20 -3.53 16 22 C -0.05 -0.62 10.03 22.29 0.22 -0.40 16 23 C -0.16 -1.80 10.03 22.25 0.22 -1.58 16 24 C -0.04 -0.69 9.70 22.46 0.22 -0.47 16 25 C -0.08 -1.93 5.89 -19.95 -0.12 -2.05 16 26 C 0.21 5.49 7.91 137.35 1.09 6.57 16 27 N -0.28 -8.46 11.06 -52.21 -0.58 -9.04 16 28 N -0.07 -1.82 13.47 37.02 0.50 -1.32 16 29 N -0.21 -3.46 7.90 37.02 0.29 -3.17 16 30 H 0.49 2.95 8.96 -347.54 -3.12 -0.17 16 31 N -0.30 -6.12 12.08 -52.16 -0.63 -6.75 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 2.40 7.50 -2.39 -0.02 2.38 16 34 H 0.03 1.33 7.37 -2.38 -0.02 1.31 16 35 H 0.06 3.00 6.13 -2.39 -0.01 2.99 16 36 H 0.03 1.12 7.43 -2.39 -0.02 1.10 16 37 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 38 H 0.33 13.93 8.25 -89.69 -0.74 13.19 16 39 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.07 2.33 7.40 -2.39 -0.02 2.31 16 41 H 0.38 9.80 9.05 -74.06 -0.67 9.13 16 42 H 0.09 1.65 7.66 -2.39 -0.02 1.63 16 43 H 0.08 1.59 7.66 -2.39 -0.02 1.57 16 44 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 45 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.16 0.79 8.06 -2.92 -0.02 0.77 16 47 H 0.15 1.87 7.88 -2.91 -0.02 1.85 16 Total: -1.00 -73.45 391.82 -2.49 -75.95 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -3.48 Total: 24.90 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 4.44 Total: -15.31 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -2.84 Total: -102.68 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -2.64 Total: -28.70 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.45 -2.49 -75.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.071 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds