Wall clock time and date at job start Wed Apr 1 2020 04:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53004 * 109.47178 * 2 1
4 4 C 1.50700 * 109.47276 * 120.00562 * 2 1 3
5 5 O 1.21276 * 119.99777 * 0.11840 * 4 2 1
6 6 N 1.34776 * 119.99987 * 179.84547 * 4 2 1
7 7 C 1.47023 * 125.64561 * 3.80385 * 6 4 2
8 8 C 1.54331 * 107.26875 * 178.90313 * 7 6 4
9 9 C 1.55154 * 102.94080 * 337.80865 * 8 7 6
10 10 H 1.09003 * 111.00292 * 277.38565 * 9 8 7
11 11 C 1.53000 * 111.00257 * 153.57694 * 9 8 7
12 12 N 1.46901 * 109.47184 * 66.44864 * 11 9 8
13 13 C 1.46901 * 111.00059 * 179.97438 * 12 11 9
14 14 C 1.50693 * 109.47142 * 180.02562 * 13 12 11
15 15 O 1.21291 * 120.00403 * 0.02562 * 14 13 12
16 16 N 1.34783 * 119.99860 * 180.02562 * 14 13 12
17 17 C 1.37098 * 119.99689 * 180.02562 * 16 14 13
18 18 H 1.08002 * 120.00470 * 0.02562 * 17 16 14
19 19 C 1.38951 * 119.99740 * 179.97438 * 17 16 14
20 20 N 1.31417 * 119.99950 * 179.97438 * 19 17 16
21 21 Si 1.86801 * 119.99890 * 0.02562 * 19 17 16
22 22 H 1.48499 * 109.47455 * 89.99780 * 21 19 17
23 23 H 1.48504 * 109.46683 * 209.99484 * 21 19 17
24 24 H 1.48491 * 109.47241 * 329.99300 * 21 19 17
25 25 C 1.47424 * 125.64922 * 183.49432 * 6 4 2
26 26 C 1.53006 * 109.46708 * 240.00739 * 2 1 3
27 27 F 1.39907 * 109.46778 * 294.27980 * 26 2 1
28 28 F 1.39896 * 109.47298 * 54.27805 * 26 2 1
29 29 H 1.08995 * 109.46451 * 292.36522 * 1 2 3
30 30 H 1.08996 * 109.47176 * 52.36648 * 1 2 3
31 31 H 1.08997 * 109.47071 * 172.36859 * 1 2 3
32 32 H 1.08995 * 109.46846 * 191.89416 * 3 2 1
33 33 H 1.09000 * 109.46856 * 311.89390 * 3 2 1
34 34 H 1.08997 * 109.46685 * 71.89483 * 3 2 1
35 35 H 1.08998 * 109.88435 * 298.32027 * 7 6 4
36 36 H 1.09001 * 109.88430 * 59.33168 * 7 6 4
37 37 H 1.09002 * 110.71733 * 96.17309 * 8 7 6
38 38 H 1.08994 * 110.71747 * 219.44142 * 8 7 6
39 39 H 1.08995 * 109.47276 * 186.45181 * 11 9 8
40 40 H 1.09003 * 109.46958 * 306.45224 * 11 9 8
41 41 H 1.00897 * 111.00371 * 303.95404 * 12 11 9
42 42 H 1.08997 * 109.47139 * 300.00315 * 13 12 11
43 43 H 1.08998 * 109.46987 * 60.00444 * 13 12 11
44 44 H 0.96994 * 120.00219 * 0.02562 * 16 14 13
45 45 H 0.96999 * 119.99980 * 180.02562 * 20 19 17
46 46 H 1.08992 * 110.36595 * 323.00409 * 25 6 4
47 47 H 1.09002 * 110.36128 * 85.32592 * 25 6 4
48 48 H 1.08998 * 109.47195 * 174.28336 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0324 -0.7105 1.2304
5 8 1.2443 -1.1734 2.0275
6 7 3.3575 -0.8364 1.4420
7 6 4.4179 -0.2630 0.6004
8 6 5.7686 -0.6423 1.2434
9 6 5.3831 -0.9271 2.7191
10 1 5.3239 -0.0022 3.2929
11 6 6.3660 -1.9067 3.3634
12 7 7.6874 -1.2743 3.4720
13 6 8.6592 -2.1876 4.0881
14 6 9.9995 -1.5054 4.1831
15 8 10.1322 -0.3699 3.7779
16 7 11.0509 -2.1570 4.7184
17 6 12.2701 -1.5361 4.8054
18 1 12.3881 -0.5248 4.4453
19 6 13.3539 -2.2078 5.3577
20 7 14.5228 -1.6128 5.4406
21 14 13.1498 -3.9568 5.9811
22 1 13.4365 -4.9114 4.8803
23 1 14.0939 -4.1960 7.1022
24 1 11.7568 -4.1534 6.4566
25 6 3.9836 -1.5664 2.5594
26 6 2.0400 -0.7211 -1.2494
27 9 1.6840 -2.0726 -1.1857
28 9 1.4694 -0.1418 -2.3878
29 1 -0.3632 0.3910 0.9504
30 1 -0.3633 0.6275 -0.8138
31 1 -0.3633 -1.0185 -0.1365
32 1 3.1092 1.4498 -0.2118
33 1 1.5142 2.0138 -0.7650
34 1 1.8601 1.8915 0.9768
35 1 4.3571 -0.6772 -0.4060
36 1 4.3147 0.8214 0.5616
37 1 6.1822 -1.5347 0.7737
38 1 6.4717 0.1883 1.1819
39 1 6.0101 -2.1777 4.3573
40 1 6.4417 -2.8031 2.7477
41 1 8.0111 -0.9558 2.5710
42 1 8.3189 -2.4600 5.0871
43 1 8.7509 -3.0860 3.4779
44 1 10.9449 -3.0652 5.0422
45 1 15.2794 -2.0818 5.8258
46 1 3.4006 -1.4369 3.4711
47 1 4.0781 -2.6246 2.3155
48 1 3.1251 -0.6334 -1.3021
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001662680747.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:43
Heat of formation + Delta-G solvation = -162.492295 kcal
Electronic energy + Delta-G solvation = -30883.283172 eV
Core-core repulsion = 26223.160668 eV
Total energy + Delta-G solvation = -4660.122504 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.52652 -47.47537 -40.93627 -38.74874 -38.19232 -35.89895 -35.47063 -33.95871
-32.10100 -31.65613 -30.03554 -28.11683 -27.49381 -26.91071 -25.29384 -24.14102
-23.16443 -21.93521 -20.64186 -19.79223 -19.41310 -18.41039 -18.13038 -17.96903
-17.60172 -16.87261 -16.49999 -15.84860 -15.66708 -15.55688 -15.10915 -14.80622
-14.38072 -14.34164 -14.22385 -13.99550 -13.83362 -13.71969 -13.54033 -13.40308
-13.32702 -13.14704 -12.91425 -12.85242 -12.79413 -12.48306 -12.33447 -12.29009
-12.09071 -11.77976 -11.65372 -11.43999 -11.22366 -11.17056 -10.99953 -10.89739
-10.62560 -10.27195 -10.00963 -9.60976 -9.12550 -8.65365 -8.25676 -8.19973
-6.34517 -3.86161 1.98120 2.35337 3.00070 3.03862 3.12706 3.16514
3.47626 3.56527 3.69470 3.83193 3.90967 4.07092 4.08726 4.21590
4.32349 4.44282 4.49442 4.62514 4.69049 4.83350 4.88762 5.00506
5.01760 5.08215 5.17885 5.19528 5.25391 5.28639 5.32101 5.40919
5.45214 5.48300 5.54740 5.57673 5.70213 5.74168 5.75889 5.81511
5.88400 6.00753 6.95331 6.99308 7.48256 7.54534 7.60136 8.10599
8.55855 8.91218 9.38678 9.78320 10.78483
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.027665 B = 0.001715 C = 0.001694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.860979 B =16325.211021 C =16526.409135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.130 4.130
3 C -0.152 4.152
4 C 0.544 3.456
5 O -0.520 6.520
6 N -0.616 5.616
7 C 0.083 3.917
8 C -0.132 4.132
9 C -0.096 4.096
10 H 0.098 0.902
11 C 0.070 3.930
12 N -0.667 5.667
13 C 0.048 3.952
14 C 0.449 3.551
15 O -0.566 6.566
16 N -0.590 5.590
17 C -0.306 4.306
18 H 0.120 0.880
19 C 0.041 3.959
20 N -0.880 5.880
21 Si 0.880 3.120
22 H -0.271 1.271
23 H -0.276 1.276
24 H -0.269 1.269
25 C 0.111 3.889
26 C 0.265 3.735
27 F -0.197 7.197
28 F -0.195 7.195
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.069 0.931
32 H 0.076 0.924
33 H 0.080 0.920
34 H 0.077 0.923
35 H 0.067 0.933
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.095 0.905
39 H 0.077 0.923
40 H 0.031 0.969
41 H 0.350 0.650
42 H 0.088 0.912
43 H 0.045 0.955
44 H 0.371 0.629
45 H 0.274 0.726
46 H 0.083 0.917
47 H 0.072 0.928
48 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.221 0.263 -12.692 29.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.134 4.134
3 C -0.209 4.209
4 C 0.331 3.669
5 O -0.395 6.395
6 N -0.350 5.350
7 C -0.039 4.039
8 C -0.170 4.170
9 C -0.116 4.116
10 H 0.117 0.883
11 C -0.060 4.060
12 N -0.300 5.300
13 C -0.085 4.085
14 C 0.235 3.765
15 O -0.447 6.447
16 N -0.229 5.229
17 C -0.434 4.434
18 H 0.137 0.863
19 C -0.162 4.162
20 N -0.520 5.520
21 Si 0.706 3.294
22 H -0.197 1.197
23 H -0.201 1.201
24 H -0.195 1.195
25 C -0.011 4.011
26 C 0.211 3.789
27 F -0.178 7.178
28 F -0.176 7.176
29 H 0.096 0.904
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.095 0.905
33 H 0.099 0.901
34 H 0.096 0.904
35 H 0.085 0.915
36 H 0.102 0.898
37 H 0.098 0.902
38 H 0.114 0.886
39 H 0.095 0.905
40 H 0.050 0.950
41 H 0.170 0.830
42 H 0.106 0.894
43 H 0.063 0.937
44 H 0.203 0.797
45 H 0.084 0.916
46 H 0.102 0.898
47 H 0.090 0.910
48 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -26.577 1.081 -11.921 29.148
hybrid contribution 0.228 -2.164 -0.261 2.192
sum -26.348 -1.083 -12.182 29.048
Atomic orbital electron populations
1.21698 0.89679 1.03816 1.03758 1.21930 1.00818 0.98250 0.92450
1.22083 1.02453 0.91785 1.04625 1.19602 0.80768 0.79611 0.86951
1.90733 1.54259 1.47928 1.46611 1.48448 1.04657 1.53484 1.28425
1.22603 0.87720 0.99338 0.94223 1.22773 0.95494 1.03437 0.95263
1.22342 0.92868 1.00409 0.95970 0.88330 1.21848 0.89413 0.94279
1.00468 1.60011 1.01064 1.38760 1.30184 1.21706 0.92350 0.93878
1.00561 1.19694 0.84898 0.87737 0.84198 1.90561 1.84129 1.18384
1.51676 1.42212 1.09971 1.14905 1.55837 1.19430 0.83653 1.01786
1.38579 0.86266 1.25051 0.95133 0.98421 0.97580 1.69622 1.00537
1.37482 1.44389 0.86666 0.78401 0.84707 0.79583 1.19654 1.20143
1.19468 1.22250 0.92992 0.95877 0.90014 1.22152 0.98210 0.75460
0.83052 1.93026 1.93912 1.34417 1.96472 1.92996 1.87532 1.84213
1.52874 0.90375 0.90868 0.91239 0.90514 0.90070 0.90389 0.91486
0.89781 0.90249 0.88634 0.90487 0.95047 0.82992 0.89384 0.93709
0.79673 0.91583 0.89819 0.91005 0.86379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.01 7.57 37.16 0.28 -0.73 16
2 C -0.13 -0.96 0.47 -155.65 -0.07 -1.03 16
3 C -0.15 -0.74 7.90 37.16 0.29 -0.45 16
4 C 0.54 5.44 6.15 -10.99 -0.07 5.37 16
5 O -0.52 -7.13 16.10 5.56 0.09 -7.04 16
6 N -0.62 -5.11 3.32 -170.66 -0.57 -5.68 16
7 C 0.08 0.47 5.27 -3.06 -0.02 0.46 16
8 C -0.13 -0.87 5.63 -24.89 -0.14 -1.01 16
9 C -0.10 -0.78 3.28 -88.59 -0.29 -1.07 16
10 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16
11 C 0.07 0.67 5.19 -3.82 -0.02 0.65 16
12 N -0.67 -9.10 6.12 -115.06 -0.70 -9.80 16
13 C 0.05 0.73 6.17 -4.98 -0.03 0.70 16
14 C 0.45 9.79 7.82 -10.99 -0.09 9.70 16
15 O -0.57 -14.64 15.78 5.55 0.09 -14.55 16
16 N -0.59 -13.66 5.09 -10.96 -0.06 -13.72 16
17 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16
18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16
19 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16
20 N -0.88 -25.37 13.96 55.50 0.77 -24.60 16
21 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16
22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
24 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16
25 C 0.11 0.94 6.39 -2.65 -0.02 0.92 16
26 C 0.26 1.91 4.04 37.16 0.15 2.06 16
27 F -0.20 -1.96 16.48 2.25 0.04 -1.92 16
28 F -0.19 -1.52 16.60 2.25 0.04 -1.48 16
29 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16
30 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16
31 H 0.07 0.62 7.78 -51.93 -0.40 0.22 16
32 H 0.08 0.27 4.87 -51.93 -0.25 0.02 16
33 H 0.08 0.32 8.02 -51.93 -0.42 -0.10 16
34 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16
35 H 0.07 0.29 5.40 -51.93 -0.28 0.01 16
36 H 0.08 0.37 5.60 -51.93 -0.29 0.08 16
37 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16
38 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16
39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
40 H 0.03 0.28 8.11 -51.93 -0.42 -0.15 16
41 H 0.35 4.84 7.65 -39.29 -0.30 4.54 16
42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
44 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16
45 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16
46 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16
47 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16
48 H 0.12 0.56 4.71 -51.93 -0.24 0.32 16
LS Contribution 385.54 15.07 5.81 5.81
Total: -1.00 -34.75 385.54 -6.47 -41.21
By element:
Atomic # 1 Polarization: 16.55 SS G_CDS: -7.00 Total: 9.55 kcal
Atomic # 6 Polarization: 8.20 SS G_CDS: -0.26 Total: 7.94 kcal
Atomic # 7 Polarization: -53.25 SS G_CDS: -0.55 Total: -53.80 kcal
Atomic # 8 Polarization: -21.77 SS G_CDS: 0.18 Total: -21.59 kcal
Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal
Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -34.75 -6.47 -41.21 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001662680747.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.281 kcal
(2) G-P(sol) polarization free energy of solvation -34.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds