Wall clock time and date at job start Wed Apr 1 2020 04:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53004 * 109.47178 * 2 1
4 4 C 1.50700 * 109.47276 * 120.00562 * 2 1 3
5 5 O 1.21276 * 119.99777 * 0.11840 * 4 2 1
6 6 N 1.34776 * 119.99987 * 179.84547 * 4 2 1
7 7 C 1.47023 * 125.64561 * 3.80385 * 6 4 2
8 8 C 1.54331 * 107.26875 * 178.90313 * 7 6 4
9 9 C 1.55154 * 102.94080 * 337.80865 * 8 7 6
10 10 H 1.09003 * 111.00292 * 277.38565 * 9 8 7
11 11 C 1.53000 * 111.00257 * 153.57694 * 9 8 7
12 12 N 1.46901 * 109.47184 * 66.44864 * 11 9 8
13 13 C 1.46901 * 111.00059 * 179.97438 * 12 11 9
14 14 C 1.50693 * 109.47142 * 180.02562 * 13 12 11
15 15 O 1.21291 * 120.00403 * 0.02562 * 14 13 12
16 16 N 1.34783 * 119.99860 * 180.02562 * 14 13 12
17 17 C 1.37098 * 119.99689 * 180.02562 * 16 14 13
18 18 H 1.08002 * 120.00470 * 0.02562 * 17 16 14
19 19 C 1.38951 * 119.99740 * 179.97438 * 17 16 14
20 20 N 1.31417 * 119.99950 * 179.97438 * 19 17 16
21 21 Si 1.86801 * 119.99890 * 0.02562 * 19 17 16
22 22 H 1.48499 * 109.47455 * 89.99780 * 21 19 17
23 23 H 1.48504 * 109.46683 * 209.99484 * 21 19 17
24 24 H 1.48491 * 109.47241 * 329.99300 * 21 19 17
25 25 C 1.47424 * 125.64922 * 183.49432 * 6 4 2
26 26 C 1.53006 * 109.46708 * 240.00739 * 2 1 3
27 27 F 1.39907 * 109.46778 * 294.27980 * 26 2 1
28 28 F 1.39896 * 109.47298 * 54.27805 * 26 2 1
29 29 H 1.08995 * 109.46451 * 292.36522 * 1 2 3
30 30 H 1.08996 * 109.47176 * 52.36648 * 1 2 3
31 31 H 1.08997 * 109.47071 * 172.36859 * 1 2 3
32 32 H 1.08995 * 109.46846 * 191.89416 * 3 2 1
33 33 H 1.09000 * 109.46856 * 311.89390 * 3 2 1
34 34 H 1.08997 * 109.46685 * 71.89483 * 3 2 1
35 35 H 1.08998 * 109.88435 * 298.32027 * 7 6 4
36 36 H 1.09001 * 109.88430 * 59.33168 * 7 6 4
37 37 H 1.09002 * 110.71733 * 96.17309 * 8 7 6
38 38 H 1.08994 * 110.71747 * 219.44142 * 8 7 6
39 39 H 1.08995 * 109.47276 * 186.45181 * 11 9 8
40 40 H 1.09003 * 109.46958 * 306.45224 * 11 9 8
41 41 H 1.00897 * 111.00371 * 303.95404 * 12 11 9
42 42 H 1.08997 * 109.47139 * 300.00315 * 13 12 11
43 43 H 1.08998 * 109.46987 * 60.00444 * 13 12 11
44 44 H 0.96994 * 120.00219 * 0.02562 * 16 14 13
45 45 H 0.96999 * 119.99980 * 180.02562 * 20 19 17
46 46 H 1.08992 * 110.36595 * 323.00409 * 25 6 4
47 47 H 1.09002 * 110.36128 * 85.32592 * 25 6 4
48 48 H 1.08998 * 109.47195 * 174.28336 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0324 -0.7105 1.2304
5 8 1.2443 -1.1734 2.0275
6 7 3.3575 -0.8364 1.4420
7 6 4.4179 -0.2630 0.6004
8 6 5.7686 -0.6423 1.2434
9 6 5.3831 -0.9271 2.7191
10 1 5.3239 -0.0022 3.2929
11 6 6.3660 -1.9067 3.3634
12 7 7.6874 -1.2743 3.4720
13 6 8.6592 -2.1876 4.0881
14 6 9.9995 -1.5054 4.1831
15 8 10.1322 -0.3699 3.7779
16 7 11.0509 -2.1570 4.7184
17 6 12.2701 -1.5361 4.8054
18 1 12.3881 -0.5248 4.4453
19 6 13.3539 -2.2078 5.3577
20 7 14.5228 -1.6128 5.4406
21 14 13.1498 -3.9568 5.9811
22 1 13.4365 -4.9114 4.8803
23 1 14.0939 -4.1960 7.1022
24 1 11.7568 -4.1534 6.4566
25 6 3.9836 -1.5664 2.5594
26 6 2.0400 -0.7211 -1.2494
27 9 1.6840 -2.0726 -1.1857
28 9 1.4694 -0.1418 -2.3878
29 1 -0.3632 0.3910 0.9504
30 1 -0.3633 0.6275 -0.8138
31 1 -0.3633 -1.0185 -0.1365
32 1 3.1092 1.4498 -0.2118
33 1 1.5142 2.0138 -0.7650
34 1 1.8601 1.8915 0.9768
35 1 4.3571 -0.6772 -0.4060
36 1 4.3147 0.8214 0.5616
37 1 6.1822 -1.5347 0.7737
38 1 6.4717 0.1883 1.1819
39 1 6.0101 -2.1777 4.3573
40 1 6.4417 -2.8031 2.7477
41 1 8.0111 -0.9558 2.5710
42 1 8.3189 -2.4600 5.0871
43 1 8.7509 -3.0860 3.4779
44 1 10.9449 -3.0652 5.0422
45 1 15.2794 -2.0818 5.8258
46 1 3.4006 -1.4369 3.4711
47 1 4.0781 -2.6246 2.3155
48 1 3.1251 -0.6334 -1.3021
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001662680747.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:42
Heat of formation + Delta-G solvation = -189.143714 kcal
Electronic energy + Delta-G solvation = -30884.438864 eV
Core-core repulsion = 26223.160668 eV
Total energy + Delta-G solvation = -4661.278197 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-50.13881 -48.10158 -41.62049 -40.29377 -39.12455 -36.76202 -36.35248 -35.81876
-33.74071 -32.87646 -30.65010 -29.06616 -28.24570 -27.55200 -26.57510 -25.18432
-24.18067 -22.55453 -21.41373 -21.16333 -20.41657 -20.22414 -18.78180 -18.56161
-18.22938 -17.93313 -17.29122 -17.20402 -16.79032 -16.55717 -16.15217 -15.89569
-15.64354 -15.07635 -14.96548 -14.95520 -14.77596 -14.53366 -14.47060 -14.43471
-14.26761 -14.15136 -13.88697 -13.74657 -13.46434 -13.44947 -13.29553 -13.17793
-12.99347 -12.92081 -12.66867 -12.40189 -12.29825 -12.13556 -11.96850 -11.81566
-11.58622 -11.50241 -11.47555 -11.03099 -10.41566 -10.23260 -9.78516 -9.29191
-8.39993 -6.00680 1.26877 1.31741 1.36524 1.45686 1.70303 1.97961
2.24134 2.60247 2.73148 2.97306 2.98139 3.16828 3.29468 3.38396
3.51741 3.64624 3.83357 3.86718 3.94310 4.02985 4.18638 4.20657
4.33023 4.35778 4.46369 4.50697 4.57411 4.58643 4.65071 4.68534
4.72398 4.75639 4.76736 4.89657 4.94040 5.08095 5.09723 5.17568
5.19420 5.35888 5.54041 5.92043 6.06079 6.29525 6.45561 6.61332
6.88066 6.89857 7.41836 7.98216 8.77503
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.027665 B = 0.001715 C = 0.001694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.860979 B =16325.211021 C =16526.409135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.128 4.128
3 C -0.150 4.150
4 C 0.539 3.461
5 O -0.568 6.568
6 N -0.614 5.614
7 C 0.079 3.921
8 C -0.129 4.129
9 C -0.089 4.089
10 H 0.086 0.914
11 C 0.074 3.926
12 N -0.685 5.685
13 C 0.061 3.939
14 C 0.448 3.552
15 O -0.613 6.613
16 N -0.592 5.592
17 C -0.327 4.327
18 H 0.056 0.944
19 C -0.016 4.016
20 N -0.935 5.935
21 Si 0.964 3.036
22 H -0.257 1.257
23 H -0.277 1.277
24 H -0.231 1.231
25 C 0.112 3.888
26 C 0.262 3.738
27 F -0.215 7.215
28 F -0.197 7.197
29 H 0.069 0.931
30 H 0.090 0.910
31 H 0.050 0.950
32 H 0.094 0.906
33 H 0.094 0.906
34 H 0.073 0.927
35 H 0.088 0.912
36 H 0.102 0.898
37 H 0.087 0.913
38 H 0.095 0.905
39 H 0.081 0.919
40 H 0.050 0.950
41 H 0.348 0.652
42 H 0.111 0.889
43 H 0.079 0.921
44 H 0.390 0.610
45 H 0.278 0.722
46 H 0.069 0.931
47 H 0.077 0.923
48 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.413 -1.735 -13.342 30.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.132 4.132
3 C -0.207 4.207
4 C 0.327 3.673
5 O -0.447 6.447
6 N -0.347 5.347
7 C -0.042 4.042
8 C -0.166 4.166
9 C -0.108 4.108
10 H 0.104 0.896
11 C -0.055 4.055
12 N -0.318 5.318
13 C -0.071 4.071
14 C 0.236 3.764
15 O -0.498 6.498
16 N -0.234 5.234
17 C -0.457 4.457
18 H 0.074 0.926
19 C -0.215 4.215
20 N -0.575 5.575
21 Si 0.784 3.216
22 H -0.181 1.181
23 H -0.203 1.203
24 H -0.154 1.154
25 C -0.011 4.011
26 C 0.209 3.791
27 F -0.197 7.197
28 F -0.178 7.178
29 H 0.088 0.912
30 H 0.109 0.891
31 H 0.069 0.931
32 H 0.113 0.887
33 H 0.113 0.887
34 H 0.092 0.908
35 H 0.106 0.894
36 H 0.120 0.880
37 H 0.105 0.895
38 H 0.114 0.886
39 H 0.099 0.901
40 H 0.068 0.932
41 H 0.167 0.833
42 H 0.129 0.871
43 H 0.097 0.903
44 H 0.225 0.775
45 H 0.088 0.912
46 H 0.087 0.913
47 H 0.096 0.904
48 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -27.783 -0.914 -12.592 30.517
hybrid contribution 0.579 -1.400 -0.107 1.519
sum -27.203 -2.314 -12.699 30.111
Atomic orbital electron populations
1.21689 0.90355 1.02916 1.03974 1.21938 1.00388 0.99488 0.91364
1.22124 1.03689 0.89915 1.04941 1.20055 0.80881 0.79132 0.87241
1.90707 1.55518 1.50077 1.48383 1.48526 1.04733 1.52911 1.28517
1.22825 0.86281 1.00513 0.94579 1.22769 0.95921 1.03865 0.94092
1.22183 0.92320 0.99473 0.96855 0.89581 1.21882 0.87405 0.94922
1.01321 1.59989 1.02150 1.39427 1.30270 1.21623 0.88404 0.94207
1.02854 1.21023 0.86717 0.87184 0.81444 1.90540 1.85354 1.20897
1.52964 1.42053 1.08805 1.15724 1.56814 1.19010 0.86508 1.00104
1.40057 0.92563 1.26121 0.93959 1.04369 0.97049 1.69807 1.01868
1.40288 1.45568 0.85369 0.80365 0.76835 0.78984 1.18104 1.20256
1.15440 1.22201 0.92856 0.96283 0.89738 1.22453 0.99603 0.74365
0.82666 1.92993 1.94179 1.35941 1.96541 1.92991 1.87767 1.84139
1.52920 0.91195 0.89127 0.93132 0.88724 0.88698 0.90818 0.89388
0.88019 0.89457 0.88635 0.90095 0.93206 0.83303 0.87055 0.90307
0.77494 0.91203 0.91258 0.90447 0.83488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.98 7.57 71.98 0.55 -1.44 16
2 C -0.13 -1.71 0.47 -52.92 -0.02 -1.73 16
3 C -0.15 -1.10 7.90 71.98 0.57 -0.54 16
4 C 0.54 10.38 6.15 87.66 0.54 10.91 16
5 O -0.57 -15.91 16.10 -3.02 -0.05 -15.96 16
6 N -0.61 -9.17 3.32 -812.24 -2.69 -11.86 16
7 C 0.08 0.67 5.27 86.73 0.46 1.12 16
8 C -0.13 -1.35 5.63 31.78 0.18 -1.17 16
9 C -0.09 -1.26 3.28 -9.48 -0.03 -1.29 16
10 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
11 C 0.07 1.20 5.19 86.30 0.45 1.65 16
12 N -0.69 -17.06 6.12 -517.95 -3.17 -20.23 16
13 C 0.06 1.68 6.17 85.55 0.53 2.21 16
14 C 0.45 19.19 7.82 87.65 0.69 19.88 16
15 O -0.61 -32.48 15.78 -3.06 -0.05 -32.53 16
16 N -0.59 -26.93 5.09 -306.98 -1.56 -28.50 16
17 C -0.33 -18.78 10.16 84.04 0.85 -17.93 16
18 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16
19 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16
20 N -0.93 -55.65 13.96 21.66 0.30 -55.35 16
21 Si 0.96 37.93 27.74 68.60 1.90 39.83 16
22 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16
23 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16
24 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16
25 C 0.11 1.73 6.39 86.78 0.55 2.28 16
26 C 0.26 3.24 4.04 71.98 0.29 3.53 16
27 F -0.22 -4.05 16.48 44.97 0.74 -3.31 16
28 F -0.20 -2.65 16.60 44.97 0.75 -1.90 16
29 H 0.07 1.15 7.86 -2.39 -0.02 1.13 16
30 H 0.09 0.99 7.82 -2.39 -0.02 0.98 16
31 H 0.05 0.94 7.78 -2.39 -0.02 0.92 16
32 H 0.09 0.34 4.87 -2.39 -0.01 0.32 16
33 H 0.09 0.48 8.02 -2.39 -0.02 0.46 16
34 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16
35 H 0.09 0.40 5.40 -2.39 -0.01 0.39 16
36 H 0.10 0.54 5.60 -2.39 -0.01 0.52 16
37 H 0.09 0.82 8.01 -2.39 -0.02 0.80 16
38 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16
39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
40 H 0.05 0.67 8.11 -2.39 -0.02 0.65 16
41 H 0.35 8.97 7.65 -89.70 -0.69 8.28 16
42 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16
43 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16
44 H 0.39 14.57 5.76 -92.71 -0.53 14.03 16
45 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16
46 H 0.07 1.28 8.00 -2.39 -0.02 1.26 16
47 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16
48 H 0.15 0.90 4.71 -2.39 -0.01 0.89 16
Total: -1.00 -82.10 385.54 1.96 -80.14
By element:
Atomic # 1 Polarization: 32.87 SS G_CDS: -0.27 Total: 32.61 kcal
Atomic # 6 Polarization: 10.99 SS G_CDS: 6.06 Total: 17.05 kcal
Atomic # 7 Polarization: -108.81 SS G_CDS: -7.13 Total: -115.94 kcal
Atomic # 8 Polarization: -48.39 SS G_CDS: -0.10 Total: -48.49 kcal
Atomic # 9 Polarization: -6.69 SS G_CDS: 1.49 Total: -5.21 kcal
Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal
Total: -82.10 1.96 -80.14 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001662680747.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -109.003 kcal
(2) G-P(sol) polarization free energy of solvation -82.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -189.144 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds