Wall clock time and date at job start Wed Apr 1 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 N 1.46493 * 109.47553 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00317 * 275.31348 * 4 3 2 6 6 H 1.08004 * 119.99825 * 37.57406 * 5 4 3 7 7 C 1.38811 * 120.00260 * 217.57631 * 5 4 3 8 8 N 1.31622 * 119.99532 * 21.41973 * 7 5 4 9 9 Si 1.86792 * 120.00019 * 201.42024 * 7 5 4 10 10 H 1.48499 * 109.47187 * 60.00001 * 9 7 5 11 11 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47305 * 299.99628 * 9 7 5 13 13 C 1.46500 * 120.00150 * 95.30743 * 4 3 2 14 14 C 1.53000 * 109.47026 * 270.00303 * 13 4 3 15 15 N 1.46498 * 109.46941 * 179.97438 * 14 13 4 16 16 C 1.34786 * 120.00092 * 179.97438 * 15 14 13 17 17 O 1.21527 * 119.99741 * 0.02562 * 16 15 14 18 18 C 1.47991 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.39649 * 119.95423 * 179.97438 * 18 16 15 20 20 C 1.37667 * 120.04822 * 180.02562 * 19 18 16 21 21 C 1.40043 * 119.95115 * 359.97438 * 20 19 18 22 22 N 1.36249 * 120.04453 * 180.02562 * 21 20 19 23 23 N 1.28998 * 120.00006 * 180.02562 * 22 21 20 24 24 C 1.34768 * 119.99925 * 179.97438 * 23 22 21 25 25 N 1.34782 * 120.00077 * 179.97438 * 24 23 22 26 26 O 1.21561 * 120.00656 * 0.02562 * 24 23 22 27 27 C 1.40038 * 119.90899 * 0.27347 * 21 20 19 28 28 C 1.37663 * 119.95164 * 359.49283 * 27 21 20 29 29 H 1.09004 * 109.47074 * 60.00666 * 1 2 3 30 30 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47466 * 299.99679 * 1 2 3 32 32 H 1.09004 * 109.47253 * 239.99894 * 2 1 3 33 33 H 1.09006 * 109.46906 * 119.99840 * 2 1 3 34 34 H 1.09004 * 109.47136 * 59.99822 * 3 2 1 35 35 H 1.09000 * 109.47122 * 300.00133 * 3 2 1 36 36 H 0.96999 * 119.99449 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47501 * 150.00304 * 13 4 3 38 38 H 1.08995 * 109.46796 * 30.00480 * 13 4 3 39 39 H 1.08998 * 109.47208 * 60.00174 * 14 13 4 40 40 H 1.08995 * 109.47477 * 299.99759 * 14 13 4 41 41 H 0.96998 * 120.00301 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.97724 * 0.02562 * 19 18 16 43 43 H 1.08000 * 120.02316 * 179.97438 * 20 19 18 44 44 H 0.96998 * 119.99834 * 0.02562 * 25 24 23 45 45 H 0.97001 * 120.00069 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.02467 * 179.72689 * 27 21 20 47 47 H 1.08001 * 119.97627 * 180.23142 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0515 1.3742 8 7 5.6019 3.1241 0.6502 9 14 6.5966 1.4961 2.6604 10 1 7.0656 0.1248 2.3367 11 1 7.7541 2.4264 2.6691 12 1 5.9522 1.4961 3.9983 13 6 4.2380 1.5598 -1.2624 14 6 4.4933 0.1643 -1.8353 15 7 5.2258 0.2815 -3.0985 16 6 5.5634 -0.8268 -3.7872 17 8 5.2598 -1.9234 -3.3604 18 6 6.3029 -0.7083 -5.0636 19 6 6.6528 -1.8574 -5.7760 20 6 7.3411 -1.7494 -6.9634 21 6 7.6901 -0.4861 -7.4569 22 7 8.3709 -0.3771 -8.6320 23 7 8.6923 0.7870 -9.0856 24 6 9.3661 0.8948 -10.2477 25 7 9.7015 2.1111 -10.7219 26 8 9.6707 -0.1047 -10.8689 27 6 7.3428 0.6646 -6.7383 28 6 6.6503 0.5524 -5.5539 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4207 3.6263 0.7850 37 1 5.1903 2.0594 -1.0848 38 1 3.6492 2.1416 -1.9715 39 1 3.5410 -0.3353 -2.0130 40 1 5.0820 -0.4175 -1.1262 41 1 5.4684 1.1568 -3.4391 42 1 6.3831 -2.8313 -5.3953 43 1 7.6118 -2.6383 -7.5138 44 1 9.4582 2.9087 -10.2265 45 1 10.1862 2.1887 -11.5586 46 1 7.6149 1.6395 -7.1150 47 1 6.3790 1.4398 -5.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663696256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:51 Heat of formation + Delta-G solvation = 38.598720 kcal Electronic energy + Delta-G solvation = -28920.434435 eV Core-core repulsion = 24719.721078 eV Total energy + Delta-G solvation = -4200.713357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.73450 -40.15940 -38.84486 -36.75448 -36.45755 -34.50093 -34.19576 -32.96633 -32.13713 -31.47056 -30.81983 -28.69412 -27.32066 -25.61861 -24.12357 -23.08911 -23.06632 -21.20377 -20.87230 -20.32921 -20.04538 -18.72551 -18.00707 -17.46159 -16.73466 -16.34099 -16.09500 -15.97423 -15.33168 -15.20971 -15.03991 -14.84188 -14.37981 -14.29578 -14.12038 -14.03161 -13.85060 -13.58624 -13.07046 -12.87604 -12.78865 -12.72392 -11.97585 -11.80664 -11.62698 -11.56815 -11.24691 -11.17020 -10.99424 -10.77964 -10.52689 -10.42778 -10.22986 -10.16180 -9.98636 -9.95402 -9.67784 -9.52158 -9.50652 -9.20544 -8.69618 -8.53471 -6.69318 -5.90799 -3.49371 -0.97389 0.90899 1.09847 2.28202 2.64459 3.11926 3.23706 3.33114 3.37399 3.41517 3.59400 3.89405 4.30751 4.39550 4.43271 4.57844 4.75761 4.90697 5.08819 5.20494 5.40695 5.43649 5.53582 5.62226 5.69260 5.71704 5.84157 5.87002 5.96336 6.02886 6.13119 6.18801 6.23067 6.28831 6.35109 6.46545 6.56626 6.60021 6.68672 6.75254 6.90455 6.92970 6.99834 7.12600 7.43120 7.69057 7.74084 8.04220 8.30210 8.41283 9.07446 9.69216 10.26866 11.09459 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.002029 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.018640 B =13798.658329 C =14780.405184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.262 4.262 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.136 3.864 14 C 0.095 3.905 15 N -0.708 5.708 16 C 0.542 3.458 17 O -0.533 6.533 18 C -0.063 4.063 19 C -0.082 4.082 20 C -0.027 4.027 21 C 0.014 3.986 22 N -0.064 5.064 23 N -0.323 5.323 24 C 0.652 3.348 25 N -0.821 5.821 26 O -0.554 6.554 27 C -0.066 4.066 28 C -0.106 4.106 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.256 0.744 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.398 0.602 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.410 0.590 45 H 0.418 0.582 46 H 0.150 0.850 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -0.690 -17.615 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.030 4.030 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.411 6.411 18 C -0.069 4.069 19 C -0.101 4.101 20 C -0.050 4.050 21 C -0.093 4.093 22 N 0.042 4.958 23 N -0.225 5.225 24 C 0.348 3.652 25 N -0.389 5.389 26 O -0.424 6.424 27 C -0.090 4.090 28 C -0.126 4.126 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.239 0.761 45 H 0.251 0.749 46 H 0.168 0.832 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.795 -1.968 -17.832 18.157 hybrid contribution 0.957 0.738 0.373 1.265 sum 3.752 -1.230 -17.459 17.900 Atomic orbital electron populations 1.21722 0.97309 1.00436 1.01010 1.22188 0.93847 1.00903 1.01585 1.20946 0.84978 0.92997 0.98974 1.43583 0.99446 1.84776 1.01999 1.18980 1.05698 1.20512 0.93945 0.92061 1.25180 1.00816 0.94507 0.98124 1.69982 1.25767 1.14686 1.42506 0.86466 0.80967 0.78312 0.81668 1.20745 1.21578 1.20584 1.21071 1.00442 0.91034 0.86573 1.22596 0.94945 1.03180 0.82280 1.46125 1.56964 1.08254 1.24536 1.18250 0.80049 0.85103 0.83904 1.90784 1.54638 1.26329 1.69354 1.20678 0.96819 0.94258 0.95146 1.21304 0.96128 0.99481 0.93212 1.21253 0.93298 0.96122 0.94346 1.19283 1.02765 0.94778 0.92476 1.72583 0.95172 1.21181 1.06869 1.72224 1.13498 1.22341 1.14458 1.17559 0.79857 0.84359 0.83453 1.42729 1.61309 1.06873 1.28038 1.90982 1.54425 1.36355 1.60655 1.22112 0.93689 0.99585 0.93584 1.21437 0.97804 0.97245 0.96100 0.93472 0.93788 0.93189 0.92942 0.92324 0.93528 0.94728 0.93433 0.88324 0.95213 0.92584 0.91335 0.76741 0.82886 0.83256 0.76061 0.74866 0.83246 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.54 6.23 -26.73 -0.17 -2.70 16 3 C 0.15 2.91 5.72 -4.05 -0.02 2.89 16 4 N -0.58 -13.26 2.43 -173.24 -0.42 -13.68 16 5 C -0.26 -6.72 9.45 -15.06 -0.14 -6.86 16 6 H 0.06 1.59 7.92 -52.48 -0.42 1.18 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -23.71 11.47 55.49 0.64 -23.08 16 9 Si 0.90 20.72 29.60 -169.99 -5.03 15.69 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.14 2.82 5.45 -4.04 -0.02 2.79 16 14 C 0.09 1.77 6.00 -4.04 -0.02 1.75 16 15 N -0.71 -10.58 5.51 -61.21 -0.34 -10.92 16 16 C 0.54 8.16 7.78 -12.26 -0.10 8.06 16 17 O -0.53 -9.95 16.33 5.34 0.09 -9.86 16 18 C -0.06 -0.72 5.88 -104.84 -0.62 -1.33 16 19 C -0.08 -0.82 9.57 -39.26 -0.38 -1.19 16 20 C -0.03 -0.24 9.99 -39.11 -0.39 -0.63 16 21 C 0.01 0.14 6.68 -84.55 -0.56 -0.42 16 22 N -0.06 -0.74 10.78 32.21 0.35 -0.40 16 23 N -0.32 -3.45 10.04 27.63 0.28 -3.17 16 24 C 0.65 7.14 8.92 -86.92 -0.78 6.36 16 25 N -0.82 -4.68 8.88 27.63 0.25 -4.44 16 26 O -0.55 -8.31 17.48 5.31 0.09 -8.22 16 27 C -0.07 -0.58 9.47 -39.12 -0.37 -0.95 16 28 C -0.11 -0.98 9.52 -39.26 -0.37 -1.35 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.93 6.64 -51.93 -0.34 0.59 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 36 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.10 2.30 5.52 -51.93 -0.29 2.01 16 38 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.06 1.07 6.64 -51.93 -0.34 0.72 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 4.83 6.49 -40.82 -0.26 4.57 16 42 H 0.15 1.48 7.63 -52.49 -0.40 1.08 16 43 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.41 1.24 8.93 -40.82 -0.36 0.88 16 45 H 0.42 1.62 8.93 -40.82 -0.36 1.25 16 46 H 0.15 1.10 7.37 -52.49 -0.39 0.71 16 47 H 0.14 1.04 6.38 -52.49 -0.33 0.70 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -33.59 402.66 -8.11 -41.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.41 Total: 5.34 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.66 Total: 4.98 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.75 Total: -55.69 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.59 -8.11 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663696256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.296 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds