Wall clock time and date at job start Wed Apr 1 2020 05:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 N 1.46493 * 109.47553 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00317 * 275.31348 * 4 3 2 6 6 H 1.08004 * 119.99825 * 37.57406 * 5 4 3 7 7 C 1.38811 * 120.00260 * 217.57631 * 5 4 3 8 8 N 1.31622 * 119.99532 * 21.41973 * 7 5 4 9 9 Si 1.86792 * 120.00019 * 201.42024 * 7 5 4 10 10 H 1.48499 * 109.47187 * 60.00001 * 9 7 5 11 11 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47305 * 299.99628 * 9 7 5 13 13 C 1.46500 * 120.00150 * 95.30743 * 4 3 2 14 14 C 1.53000 * 109.47026 * 270.00303 * 13 4 3 15 15 N 1.46498 * 109.46941 * 179.97438 * 14 13 4 16 16 C 1.34786 * 120.00092 * 179.97438 * 15 14 13 17 17 O 1.21527 * 119.99741 * 0.02562 * 16 15 14 18 18 C 1.47991 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.39649 * 119.95423 * 179.97438 * 18 16 15 20 20 C 1.37667 * 120.04822 * 180.02562 * 19 18 16 21 21 C 1.40043 * 119.95115 * 359.97438 * 20 19 18 22 22 N 1.36249 * 120.04453 * 180.02562 * 21 20 19 23 23 N 1.28998 * 120.00006 * 180.02562 * 22 21 20 24 24 C 1.34768 * 119.99925 * 179.97438 * 23 22 21 25 25 N 1.34782 * 120.00077 * 179.97438 * 24 23 22 26 26 O 1.21561 * 120.00656 * 0.02562 * 24 23 22 27 27 C 1.40038 * 119.90899 * 0.27347 * 21 20 19 28 28 C 1.37663 * 119.95164 * 359.49283 * 27 21 20 29 29 H 1.09004 * 109.47074 * 60.00666 * 1 2 3 30 30 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47466 * 299.99679 * 1 2 3 32 32 H 1.09004 * 109.47253 * 239.99894 * 2 1 3 33 33 H 1.09006 * 109.46906 * 119.99840 * 2 1 3 34 34 H 1.09004 * 109.47136 * 59.99822 * 3 2 1 35 35 H 1.09000 * 109.47122 * 300.00133 * 3 2 1 36 36 H 0.96999 * 119.99449 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47501 * 150.00304 * 13 4 3 38 38 H 1.08995 * 109.46796 * 30.00480 * 13 4 3 39 39 H 1.08998 * 109.47208 * 60.00174 * 14 13 4 40 40 H 1.08995 * 109.47477 * 299.99759 * 14 13 4 41 41 H 0.96998 * 120.00301 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.97724 * 0.02562 * 19 18 16 43 43 H 1.08000 * 120.02316 * 179.97438 * 20 19 18 44 44 H 0.96998 * 119.99834 * 0.02562 * 25 24 23 45 45 H 0.97001 * 120.00069 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.02467 * 179.72689 * 27 21 20 47 47 H 1.08001 * 119.97627 * 180.23142 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0515 1.3742 8 7 5.6019 3.1241 0.6502 9 14 6.5966 1.4961 2.6604 10 1 7.0656 0.1248 2.3367 11 1 7.7541 2.4264 2.6691 12 1 5.9522 1.4961 3.9983 13 6 4.2380 1.5598 -1.2624 14 6 4.4933 0.1643 -1.8353 15 7 5.2258 0.2815 -3.0985 16 6 5.5634 -0.8268 -3.7872 17 8 5.2598 -1.9234 -3.3604 18 6 6.3029 -0.7083 -5.0636 19 6 6.6528 -1.8574 -5.7760 20 6 7.3411 -1.7494 -6.9634 21 6 7.6901 -0.4861 -7.4569 22 7 8.3709 -0.3771 -8.6320 23 7 8.6923 0.7870 -9.0856 24 6 9.3661 0.8948 -10.2477 25 7 9.7015 2.1111 -10.7219 26 8 9.6707 -0.1047 -10.8689 27 6 7.3428 0.6646 -6.7383 28 6 6.6503 0.5524 -5.5539 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4207 3.6263 0.7850 37 1 5.1903 2.0594 -1.0848 38 1 3.6492 2.1416 -1.9715 39 1 3.5410 -0.3353 -2.0130 40 1 5.0820 -0.4175 -1.1262 41 1 5.4684 1.1568 -3.4391 42 1 6.3831 -2.8313 -5.3953 43 1 7.6118 -2.6383 -7.5138 44 1 9.4582 2.9087 -10.2265 45 1 10.1862 2.1887 -11.5586 46 1 7.6149 1.6395 -7.1150 47 1 6.3790 1.4398 -5.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663696256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:50 Heat of formation + Delta-G solvation = 20.668646 kcal Electronic energy + Delta-G solvation = -28921.211941 eV Core-core repulsion = 24719.721078 eV Total energy + Delta-G solvation = -4201.490864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32488 -40.23357 -39.07326 -38.13745 -36.98333 -35.88792 -34.89887 -34.27048 -33.55431 -31.81648 -30.66593 -30.38219 -29.37752 -27.05966 -26.09013 -24.32751 -22.94866 -22.57131 -22.35215 -21.30512 -20.58555 -19.75353 -19.31601 -18.34784 -17.81526 -17.64728 -17.26734 -16.82540 -16.32609 -16.20999 -15.99660 -15.65561 -15.51915 -15.17657 -14.95496 -14.90309 -14.68679 -14.62416 -14.45192 -14.12427 -13.90030 -13.64612 -13.39247 -13.23288 -13.07073 -12.99344 -12.93131 -12.63374 -12.42185 -12.30871 -11.99608 -11.86811 -11.63999 -11.22337 -11.15963 -11.05712 -10.60599 -10.44133 -10.21654 -10.00397 -9.97508 -9.18328 -8.33684 -7.60642 -5.43518 -1.99825 0.25218 0.68162 0.99468 1.25884 1.56997 1.57869 1.81553 2.08717 2.52823 2.63618 2.69569 3.23571 3.33625 3.34298 3.51504 3.61793 3.73311 3.87089 3.97902 4.15726 4.19946 4.32761 4.39076 4.46557 4.56170 4.57345 4.61132 4.72372 4.73886 4.81382 4.92505 4.96094 5.19940 5.23260 5.28953 5.30708 5.47369 5.58934 5.68125 5.88523 6.04603 6.23958 6.36584 6.39278 6.73379 6.89355 6.95692 7.08740 7.48172 7.74190 8.12764 8.56239 9.89707 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.002029 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.018640 B =13798.658329 C =14780.405184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.152 4.152 3 C 0.068 3.932 4 N -0.433 5.433 5 C 0.393 3.607 6 H 0.286 0.714 7 C -0.094 4.094 8 N -0.526 5.526 9 Si 1.013 2.987 10 H -0.250 1.250 11 H -0.266 1.266 12 H -0.195 1.195 13 C 0.061 3.939 14 C 0.106 3.894 15 N -0.734 5.734 16 C 0.589 3.411 17 O -0.621 6.621 18 C -0.396 4.396 19 C -0.009 4.009 20 C -0.273 4.273 21 C 0.090 3.910 22 N -0.470 5.470 23 N -0.641 5.641 24 C 0.577 3.423 25 N -0.851 5.851 26 O -0.765 6.765 27 C -0.273 4.273 28 C -0.020 4.020 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.122 0.878 36 H 0.378 0.622 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.408 0.592 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.394 0.606 45 H 0.393 0.607 46 H 0.066 0.934 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.734 17.979 66.651 75.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.189 4.189 3 C -0.051 4.051 4 N -0.104 5.104 5 C 0.216 3.784 6 H 0.302 0.698 7 C -0.330 4.330 8 N -0.151 5.151 9 Si 0.826 3.174 10 H -0.174 1.174 11 H -0.190 1.190 12 H -0.116 1.116 13 C -0.061 4.061 14 C -0.018 4.018 15 N -0.389 5.389 16 C 0.387 3.613 17 O -0.508 6.508 18 C -0.405 4.405 19 C -0.031 4.031 20 C -0.296 4.296 21 C -0.073 4.073 22 N -0.296 5.296 23 N -0.521 5.521 24 C 0.275 3.725 25 N -0.419 5.419 26 O -0.661 6.661 27 C -0.297 4.297 28 C -0.042 4.042 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.179 0.821 35 H 0.141 0.859 36 H 0.198 0.802 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.245 0.755 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.222 0.778 45 H 0.223 0.777 46 H 0.085 0.915 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -30.713 16.946 65.678 74.459 hybrid contribution 1.467 0.586 -1.788 2.386 sum -29.246 17.532 63.890 72.420 Atomic orbital electron populations 1.21713 0.94190 1.02544 1.03042 1.22102 0.97474 0.94672 1.04701 1.23405 0.71445 1.00106 1.10096 1.49067 1.11215 1.43054 1.07041 1.27125 0.84542 0.77955 0.88777 0.69849 1.28481 1.02618 0.96880 1.05036 1.69814 1.25359 1.03788 1.16153 0.84452 0.75364 0.80747 0.76849 1.17397 1.19027 1.11584 1.22974 1.01435 0.97339 0.84372 1.21642 0.97781 0.96041 0.86319 1.45320 1.60754 1.09002 1.23799 1.17885 0.77066 0.83230 0.83097 1.90522 1.60028 1.28370 1.71863 1.18221 1.26452 0.93075 1.02792 1.20198 0.94026 0.96816 0.92097 1.19779 1.15002 0.93665 1.01160 1.18948 1.01271 0.93831 0.93245 1.71574 1.20875 1.22896 1.14279 1.71515 1.40312 1.21298 1.18957 1.18490 0.84128 0.82941 0.86940 1.41907 1.66411 1.05885 1.27653 1.90406 1.69086 1.39268 1.67367 1.20705 1.12460 0.96023 1.00513 1.20457 0.94967 0.95362 0.93390 0.93091 0.93102 0.89969 0.92662 0.87487 0.82080 0.85943 0.80195 0.85253 0.84695 0.91018 0.90908 0.75537 0.89034 0.92942 0.77843 0.77742 0.91524 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.53 9.91 71.98 0.71 2.25 16 2 C -0.15 2.18 6.23 30.59 0.19 2.37 16 3 C 0.07 -1.39 5.72 86.38 0.49 -0.90 16 4 N -0.43 8.17 2.43 -702.02 -1.71 6.46 16 5 C 0.39 -10.04 9.45 84.03 0.79 -9.25 16 6 H 0.29 -11.10 7.92 -2.91 -0.02 -11.12 16 7 C -0.09 1.86 4.95 84.86 0.42 2.28 16 8 N -0.53 7.49 11.47 21.65 0.25 7.74 16 9 Si 1.01 -16.26 29.60 68.60 2.03 -14.23 16 10 H -0.25 2.52 7.11 99.48 0.71 3.22 16 11 H -0.27 2.42 7.11 99.48 0.71 3.12 16 12 H -0.19 3.73 7.11 99.48 0.71 4.44 16 13 C 0.06 -0.49 5.45 86.38 0.47 -0.02 16 14 C 0.11 0.67 6.00 86.38 0.52 1.18 16 15 N -0.73 -16.66 5.51 -465.84 -2.56 -19.22 16 16 C 0.59 24.39 7.78 86.83 0.68 25.06 16 17 O -0.62 -28.51 16.33 -3.80 -0.06 -28.58 16 18 C -0.40 -21.96 5.88 -20.01 -0.12 -22.08 16 19 C -0.01 -0.59 9.57 22.48 0.22 -0.37 16 20 C -0.27 -20.75 9.99 22.57 0.23 -20.52 16 21 C 0.09 7.45 6.68 39.33 0.26 7.71 16 22 N -0.47 -43.44 10.78 -52.01 -0.56 -44.00 16 23 N -0.64 -56.76 10.04 -184.78 -1.85 -58.62 16 24 C 0.58 48.94 8.92 179.06 1.60 50.54 16 25 N -0.85 -55.22 8.88 -184.77 -1.64 -56.86 16 26 O -0.77 -71.49 17.48 -3.91 -0.07 -71.55 16 27 C -0.27 -19.68 9.47 22.57 0.21 -19.47 16 28 C -0.02 -1.10 9.52 22.48 0.21 -0.88 16 29 H 0.05 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.08 -1.13 8.14 -2.39 -0.02 -1.15 16 32 H 0.05 -0.36 6.64 -2.39 -0.02 -0.38 16 33 H 0.11 -2.12 8.14 -2.38 -0.02 -2.14 16 34 H 0.16 -4.56 8.08 -2.39 -0.02 -4.57 16 35 H 0.12 -2.25 7.83 -2.39 -0.02 -2.26 16 36 H 0.38 -5.32 8.31 -92.71 -0.77 -6.09 16 37 H 0.13 -1.04 5.52 -2.39 -0.01 -1.05 16 38 H 0.14 -1.18 7.86 -2.39 -0.02 -1.20 16 39 H 0.07 0.54 6.64 -2.39 -0.02 0.53 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.41 7.95 6.49 -92.71 -0.60 7.35 16 42 H 0.09 5.56 7.63 -2.91 -0.02 5.54 16 43 H 0.05 4.08 8.06 -2.91 -0.02 4.06 16 44 H 0.39 22.67 8.93 -92.71 -0.83 21.84 16 45 H 0.39 22.38 8.93 -92.71 -0.83 21.55 16 46 H 0.07 4.96 7.37 -2.91 -0.02 4.94 16 47 H 0.12 5.12 6.38 -2.91 -0.02 5.10 16 Total: -1.00 -209.00 402.66 -0.51 -209.51 By element: Atomic # 1 Polarization: 52.67 SS G_CDS: -1.22 Total: 51.46 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.89 Total: 17.90 kcal Atomic # 7 Polarization: -156.42 SS G_CDS: -8.08 Total: -164.50 kcal Atomic # 8 Polarization: -100.00 SS G_CDS: -0.13 Total: -100.13 kcal Atomic # 14 Polarization: -16.26 SS G_CDS: 2.03 Total: -14.23 kcal Total: -209.00 -0.51 -209.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663696256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.182 kcal (2) G-P(sol) polarization free energy of solvation -209.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -209.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds