Wall clock time and date at job start Wed Apr 1 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46699 * 2 1 4 4 N 1.30452 * 125.98956 * 270.14613 * 3 2 1 5 5 N 1.39934 * 108.89626 * 180.26821 * 4 3 2 6 6 H 0.96996 * 125.75137 * 179.77503 * 5 4 3 7 7 C 1.34258 * 108.49365 * 359.74431 * 5 4 3 8 8 C 1.38046 * 107.41698 * 0.02562 * 7 5 4 9 9 C 1.47432 * 126.41397 * 179.97438 * 8 7 5 10 10 O 1.21599 * 119.99733 * 180.02562 * 9 8 7 11 11 N 1.34768 * 119.99818 * 0.02562 * 9 8 7 12 12 C 1.49046 * 127.52700 * 1.21291 * 11 9 8 13 13 C 1.56019 * 105.22062 * 181.94734 * 12 11 9 14 14 H 1.08992 * 116.91173 * 158.55392 * 13 12 11 15 15 C 1.57088 * 99.59583 * 32.13385 * 13 12 11 16 16 C 1.49284 * 126.92561 * 179.97438 * 11 9 8 17 17 H 1.09000 * 116.11944 * 16.85675 * 16 11 9 18 18 C 1.56011 * 104.90127 * 247.09273 * 16 11 9 19 19 N 1.48287 * 105.06773 * 288.60818 * 18 16 11 20 20 C 1.46896 * 111.00201 * 122.54331 * 19 18 16 21 21 C 1.50697 * 109.47308 * 183.76225 * 20 19 18 22 22 O 1.21285 * 120.00151 * 0.02562 * 21 20 19 23 23 N 1.34784 * 119.99915 * 180.02562 * 21 20 19 24 24 C 1.37094 * 119.99891 * 179.97438 * 23 21 20 25 25 H 1.08000 * 120.00084 * 0.02562 * 24 23 21 26 26 C 1.38954 * 120.00123 * 180.02562 * 24 23 21 27 27 N 1.31412 * 119.99424 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00174 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46993 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47350 * 59.99490 * 28 26 24 31 31 H 1.48503 * 109.46965 * 299.99532 * 28 26 24 32 32 H 1.08994 * 109.47677 * 59.99989 * 1 2 3 33 33 H 1.09006 * 109.46938 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47140 * 299.99757 * 1 2 3 35 35 H 1.08994 * 109.46718 * 239.99930 * 2 1 3 36 36 H 1.08998 * 109.46987 * 119.99833 * 2 1 3 37 37 H 1.08001 * 126.29304 * 179.97438 * 7 5 4 38 38 H 1.09000 * 110.82915 * 62.70959 * 12 11 9 39 39 H 1.09010 * 109.69808 * 300.60165 * 12 11 9 40 40 H 1.09005 * 112.35692 * 64.33982 * 15 13 12 41 41 H 1.09005 * 112.35579 * 191.65637 * 15 13 12 42 42 H 1.09002 * 110.32189 * 169.71668 * 18 16 11 43 43 H 1.08991 * 110.32248 * 47.50689 * 18 16 11 44 44 H 1.09003 * 109.47015 * 63.75643 * 20 19 18 45 45 H 1.09005 * 109.47219 * 303.76306 * 20 19 18 46 46 H 0.97003 * 119.99940 * 0.02562 * 23 21 20 47 47 H 0.97003 * 120.00618 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1445 -1.0555 5 7 2.7378 3.4031 -0.6442 6 1 2.9981 4.1310 -1.2301 7 6 2.7502 3.4335 0.6979 8 6 2.3094 2.2035 1.1432 9 6 2.1608 1.7833 2.5486 10 8 1.7605 0.6652 2.8097 11 7 2.4687 2.6384 3.5437 12 6 2.9460 4.0447 3.4171 13 6 3.1889 4.5281 4.8805 14 1 3.8632 5.3737 5.0152 15 6 3.6281 3.1695 5.5355 16 6 2.3768 2.3778 5.0107 17 1 2.3034 1.3318 5.3086 18 6 1.2398 3.3195 5.5150 19 7 1.8116 4.6859 5.4452 20 6 0.9906 5.5573 4.5940 21 6 1.6500 6.9068 4.4725 22 8 2.7009 7.1215 5.0388 23 7 1.0721 7.8753 3.7345 24 6 1.6718 9.1032 3.6243 25 1 2.6075 9.2943 4.1286 26 6 1.0757 10.1018 2.8639 27 7 -0.0626 9.8690 2.2500 28 14 1.8932 11.7746 2.7133 29 1 1.0622 12.6561 1.8543 30 1 3.2385 11.6153 2.1050 31 1 2.0284 12.3827 4.0614 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0506 4.2669 1.3157 38 1 2.1935 4.6672 2.9330 39 1 3.8776 4.0670 2.8516 40 1 4.5623 2.7917 5.1200 41 1 3.6590 3.2247 6.6237 42 1 0.9722 3.0732 6.5426 43 1 0.3674 3.2406 4.8665 44 1 0.0027 5.6743 5.0397 45 1 0.8920 5.1106 3.6046 46 1 0.2314 7.7037 3.2819 47 1 -0.4870 9.0002 2.3279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665400833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:14 Heat of formation + Delta-G solvation = 56.645901 kcal Electronic energy + Delta-G solvation = -31736.826161 eV Core-core repulsion = 27536.895388 eV Total energy + Delta-G solvation = -4199.930773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78606 -40.99234 -38.57795 -37.86909 -34.64820 -34.37674 -33.70573 -31.82753 -31.12037 -30.48083 -29.86063 -29.69555 -26.56422 -25.44774 -24.22561 -24.10893 -22.93133 -21.60330 -20.63235 -19.88378 -19.66569 -19.24034 -18.02500 -17.57405 -17.00228 -16.60543 -16.36072 -15.56519 -15.27766 -15.22256 -14.90952 -14.51732 -14.38777 -14.15311 -13.97761 -13.81303 -13.43729 -13.25667 -12.87801 -12.76946 -12.69782 -12.46657 -12.09827 -11.86098 -11.65440 -11.54382 -11.50409 -11.38139 -11.32215 -11.18979 -11.01630 -10.98194 -10.92202 -10.28658 -9.95832 -9.88058 -9.73362 -9.63272 -9.05004 -8.74468 -8.52882 -8.16767 -8.06544 -6.85293 -3.99666 1.32327 1.98599 2.45238 2.83204 3.21790 3.27831 3.33535 3.47442 3.69963 3.81349 4.18741 4.21466 4.33766 4.41932 4.46724 4.57757 4.83082 4.86673 4.91556 4.97177 5.09220 5.16568 5.18923 5.23702 5.28954 5.35247 5.37559 5.50398 5.59245 5.65654 5.71075 5.72632 5.80749 5.83474 5.89180 5.91002 6.02369 6.10103 6.18241 6.27039 6.30959 6.85417 6.88161 7.01756 7.32417 7.48683 7.69103 7.97057 8.17454 8.47971 8.68085 9.35728 9.74902 10.57479 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003447 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.011705 B = 8121.376854 C = 9796.778292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.137 3.863 4 N -0.299 5.299 5 N -0.459 5.459 6 H 0.446 0.554 7 C 0.100 3.900 8 C -0.287 4.287 9 C 0.614 3.386 10 O -0.544 6.544 11 N -0.620 5.620 12 C 0.051 3.949 13 C 0.072 3.928 14 H 0.157 0.843 15 C -0.138 4.138 16 C 0.113 3.887 17 H 0.126 0.874 18 C 0.024 3.976 19 N -0.492 5.492 20 C 0.029 3.971 21 C 0.445 3.555 22 O -0.573 6.573 23 N -0.573 5.573 24 C -0.383 4.383 25 H 0.100 0.900 26 C -0.008 4.008 27 N -0.898 5.898 28 Si 1.090 2.910 29 H -0.279 1.279 30 H -0.284 1.284 31 H -0.283 1.283 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.192 0.808 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.375 0.625 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -15.769 -1.726 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.031 4.031 4 N -0.121 5.121 5 N -0.163 5.163 6 H 0.291 0.709 7 C -0.053 4.053 8 C -0.302 4.302 9 C 0.405 3.595 10 O -0.423 6.423 11 N -0.355 5.355 12 C -0.073 4.073 13 C -0.036 4.036 14 H 0.174 0.826 15 C -0.177 4.177 16 C 0.010 3.990 17 H 0.144 0.856 18 C -0.105 4.105 19 N -0.215 5.215 20 C -0.103 4.103 21 C 0.230 3.770 22 O -0.457 6.457 23 N -0.211 5.211 24 C -0.512 4.512 25 H 0.118 0.882 26 C -0.211 4.211 27 N -0.537 5.537 28 Si 0.916 3.084 29 H -0.204 1.204 30 H -0.210 1.210 31 H -0.209 1.209 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.209 0.791 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.208 0.792 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.414 -14.458 -2.764 15.367 hybrid contribution -0.398 -1.238 0.066 1.302 sum 4.016 -15.696 -2.697 16.424 Atomic orbital electron populations 1.21617 0.93952 1.02019 1.02069 1.20109 0.96556 0.87988 1.03996 1.22461 0.95129 0.96934 0.88585 1.77144 1.21690 0.90784 1.22495 1.46174 1.51059 1.13461 1.05605 0.70942 1.23893 0.96407 0.99260 0.85730 1.20199 1.20016 0.95626 0.94344 1.16827 0.76415 0.83503 0.82764 1.90725 1.47778 1.19830 1.83927 1.49374 1.66510 1.13446 1.06139 1.23822 0.99845 0.82189 1.01420 1.24935 0.92305 0.97890 0.88489 0.82598 1.24028 0.97018 0.94806 1.01825 1.24000 0.95924 1.00007 0.79091 0.85609 1.23760 0.96542 0.88320 1.01836 1.64732 1.01646 1.07917 1.47248 1.22230 0.97987 0.93794 0.96249 1.19568 0.87566 0.85593 0.84231 1.90467 1.24020 1.81652 1.49576 1.41956 1.22450 1.12147 1.44537 1.20524 1.08954 0.89010 1.32748 0.88202 1.26508 0.96282 1.04488 0.93778 1.70912 1.16437 1.24896 1.41470 0.83149 0.75031 0.73345 0.76918 1.20407 1.21014 1.20914 0.92916 0.91890 0.92222 0.90641 0.88168 0.79141 0.89950 0.90801 0.89973 0.88555 0.89090 0.92147 0.89219 0.93028 0.79222 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.05 -0.55 5.97 -27.88 -0.17 -0.71 16 3 C 0.14 1.84 6.52 -82.02 -0.53 1.30 16 4 N -0.30 -3.95 12.63 33.90 0.43 -3.52 16 5 N -0.46 -4.99 7.29 30.85 0.22 -4.76 16 6 H 0.45 3.43 8.96 -182.73 -1.64 1.79 16 7 C 0.10 1.15 10.70 -16.56 -0.18 0.97 16 8 C -0.29 -3.86 6.11 -105.06 -0.64 -4.50 16 9 C 0.61 8.82 7.90 -12.52 -0.10 8.72 16 10 O -0.54 -8.84 15.27 5.28 0.08 -8.76 16 11 N -0.62 -7.91 3.01 -157.07 -0.47 -8.39 16 12 C 0.05 0.63 4.05 -1.02 0.00 0.63 16 13 C 0.07 0.99 4.17 -62.32 -0.26 0.73 16 14 H 0.16 2.53 6.39 -51.93 -0.33 2.20 16 15 C -0.14 -1.52 6.80 -22.29 -0.15 -1.67 16 16 C 0.11 1.31 5.18 -62.55 -0.32 0.99 16 17 H 0.13 1.38 8.06 -51.93 -0.42 0.96 16 18 C 0.02 0.30 6.30 -1.45 -0.01 0.29 16 19 N -0.49 -7.33 5.16 -218.19 -1.13 -8.46 16 20 C 0.03 0.47 4.65 -4.98 -0.02 0.45 16 21 C 0.44 9.44 7.44 -10.98 -0.08 9.36 16 22 O -0.57 -13.78 13.59 5.55 0.08 -13.71 16 23 N -0.57 -13.29 5.28 -10.96 -0.06 -13.35 16 24 C -0.38 -10.04 9.68 -14.93 -0.14 -10.19 16 25 H 0.10 2.77 7.16 -52.49 -0.38 2.39 16 26 C -0.01 -0.20 5.50 -17.47 -0.10 -0.29 16 27 N -0.90 -24.07 13.68 55.50 0.76 -23.31 16 28 Si 1.09 23.06 29.92 -169.99 -5.09 17.97 16 29 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 30 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 31 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.24 6.56 -51.93 -0.34 0.90 16 37 H 0.19 1.90 4.55 -52.49 -0.24 1.66 16 38 H 0.08 1.12 4.41 -51.93 -0.23 0.89 16 39 H 0.07 0.81 6.87 -51.92 -0.36 0.46 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.78 7.62 -51.93 -0.40 0.39 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.05 0.79 5.65 -51.93 -0.29 0.49 16 46 H 0.37 8.17 6.73 -40.82 -0.27 7.90 16 47 H 0.26 6.73 6.78 -40.82 -0.28 6.46 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -32.78 372.88 -9.25 -42.03 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -7.35 Total: 13.68 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -2.35 Total: 4.95 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.24 Total: -61.79 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.46 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.09 Total: 17.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.78 -9.25 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665400833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.674 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds