Wall clock time and date at job start Wed Apr 1 2020 04:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46699 * 2 1 4 4 N 1.30452 * 125.98956 * 270.14613 * 3 2 1 5 5 N 1.39934 * 108.89626 * 180.26821 * 4 3 2 6 6 H 0.96996 * 125.75137 * 179.77503 * 5 4 3 7 7 C 1.34258 * 108.49365 * 359.74431 * 5 4 3 8 8 C 1.38046 * 107.41698 * 0.02562 * 7 5 4 9 9 C 1.47432 * 126.41397 * 179.97438 * 8 7 5 10 10 O 1.21599 * 119.99733 * 180.02562 * 9 8 7 11 11 N 1.34768 * 119.99818 * 0.02562 * 9 8 7 12 12 C 1.49046 * 127.52700 * 1.21291 * 11 9 8 13 13 C 1.56019 * 105.22062 * 181.94734 * 12 11 9 14 14 H 1.08992 * 116.91173 * 158.55392 * 13 12 11 15 15 C 1.57088 * 99.59583 * 32.13385 * 13 12 11 16 16 C 1.49284 * 126.92561 * 179.97438 * 11 9 8 17 17 H 1.09000 * 116.11944 * 16.85675 * 16 11 9 18 18 C 1.56011 * 104.90127 * 247.09273 * 16 11 9 19 19 N 1.48287 * 105.06773 * 288.60818 * 18 16 11 20 20 C 1.46896 * 111.00201 * 122.54331 * 19 18 16 21 21 C 1.50697 * 109.47308 * 183.76225 * 20 19 18 22 22 O 1.21285 * 120.00151 * 0.02562 * 21 20 19 23 23 N 1.34784 * 119.99915 * 180.02562 * 21 20 19 24 24 C 1.37094 * 119.99891 * 179.97438 * 23 21 20 25 25 H 1.08000 * 120.00084 * 0.02562 * 24 23 21 26 26 C 1.38954 * 120.00123 * 180.02562 * 24 23 21 27 27 N 1.31412 * 119.99424 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00174 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46993 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47350 * 59.99490 * 28 26 24 31 31 H 1.48503 * 109.46965 * 299.99532 * 28 26 24 32 32 H 1.08994 * 109.47677 * 59.99989 * 1 2 3 33 33 H 1.09006 * 109.46938 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47140 * 299.99757 * 1 2 3 35 35 H 1.08994 * 109.46718 * 239.99930 * 2 1 3 36 36 H 1.08998 * 109.46987 * 119.99833 * 2 1 3 37 37 H 1.08001 * 126.29304 * 179.97438 * 7 5 4 38 38 H 1.09000 * 110.82915 * 62.70959 * 12 11 9 39 39 H 1.09010 * 109.69808 * 300.60165 * 12 11 9 40 40 H 1.09005 * 112.35692 * 64.33982 * 15 13 12 41 41 H 1.09005 * 112.35579 * 191.65637 * 15 13 12 42 42 H 1.09002 * 110.32189 * 169.71668 * 18 16 11 43 43 H 1.08991 * 110.32248 * 47.50689 * 18 16 11 44 44 H 1.09003 * 109.47015 * 63.75643 * 20 19 18 45 45 H 1.09005 * 109.47219 * 303.76306 * 20 19 18 46 46 H 0.97003 * 119.99940 * 0.02562 * 23 21 20 47 47 H 0.97003 * 120.00618 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1445 -1.0555 5 7 2.7378 3.4031 -0.6442 6 1 2.9981 4.1310 -1.2301 7 6 2.7502 3.4335 0.6979 8 6 2.3094 2.2035 1.1432 9 6 2.1608 1.7833 2.5486 10 8 1.7605 0.6652 2.8097 11 7 2.4687 2.6384 3.5437 12 6 2.9460 4.0447 3.4171 13 6 3.1889 4.5281 4.8805 14 1 3.8632 5.3737 5.0152 15 6 3.6281 3.1695 5.5355 16 6 2.3768 2.3778 5.0107 17 1 2.3034 1.3318 5.3086 18 6 1.2398 3.3195 5.5150 19 7 1.8116 4.6859 5.4452 20 6 0.9906 5.5573 4.5940 21 6 1.6500 6.9068 4.4725 22 8 2.7009 7.1215 5.0388 23 7 1.0721 7.8753 3.7345 24 6 1.6718 9.1032 3.6243 25 1 2.6075 9.2943 4.1286 26 6 1.0757 10.1018 2.8639 27 7 -0.0626 9.8690 2.2500 28 14 1.8932 11.7746 2.7133 29 1 1.0622 12.6561 1.8543 30 1 3.2385 11.6153 2.1050 31 1 2.0284 12.3827 4.0614 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0506 4.2669 1.3157 38 1 2.1935 4.6672 2.9330 39 1 3.8776 4.0670 2.8516 40 1 4.5623 2.7917 5.1200 41 1 3.6590 3.2247 6.6237 42 1 0.9722 3.0732 6.5426 43 1 0.3674 3.2406 4.8665 44 1 0.0027 5.6743 5.0397 45 1 0.8920 5.1106 3.6046 46 1 0.2314 7.7037 3.2819 47 1 -0.4870 9.0002 2.3279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665400833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:13 Heat of formation + Delta-G solvation = 32.317782 kcal Electronic energy + Delta-G solvation = -31737.881107 eV Core-core repulsion = 27536.895388 eV Total energy + Delta-G solvation = -4200.985719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.78385 -42.04996 -40.10080 -39.18752 -36.38626 -35.43239 -34.87116 -33.25248 -32.68566 -31.40964 -30.89806 -30.72825 -28.00023 -26.51021 -25.86926 -25.09108 -23.97251 -22.56453 -21.94411 -21.21215 -20.75974 -20.27628 -19.88195 -18.63450 -18.19961 -17.86224 -17.59955 -16.86542 -16.58806 -16.33068 -16.03655 -15.89880 -15.60592 -15.44934 -15.21464 -15.05630 -14.76429 -14.34445 -14.13869 -13.94569 -13.71610 -13.38706 -13.32843 -13.17671 -12.94447 -12.92317 -12.62227 -12.56384 -12.44450 -12.35243 -12.15073 -12.04930 -11.92545 -11.88057 -11.83633 -11.45617 -10.95600 -10.68403 -10.26386 -10.07772 -10.06560 -9.77102 -9.24303 -8.88635 -6.03169 0.36637 0.97894 1.53119 1.55754 1.56854 1.83097 1.85998 2.01658 2.28658 2.39334 2.66934 3.12483 3.19454 3.24353 3.35594 3.46753 3.54443 3.73561 3.82948 3.93985 3.97343 4.04545 4.16603 4.23538 4.25151 4.34056 4.41243 4.42691 4.46862 4.54685 4.61800 4.68996 4.77562 4.90278 4.97495 5.00264 5.11640 5.13133 5.18137 5.25195 5.37781 5.61739 5.73364 5.88722 5.98768 6.07723 6.34925 6.46546 6.59031 6.77547 7.10681 7.46916 7.94250 8.58317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003447 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.011705 B = 8121.376854 C = 9796.778292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C 0.127 3.873 4 N -0.316 5.316 5 N -0.449 5.449 6 H 0.459 0.541 7 C 0.112 3.888 8 C -0.310 4.310 9 C 0.612 3.388 10 O -0.567 6.567 11 N -0.616 5.616 12 C 0.058 3.942 13 C 0.062 3.938 14 H 0.131 0.869 15 C -0.121 4.121 16 C 0.115 3.885 17 H 0.138 0.862 18 C 0.029 3.971 19 N -0.506 5.506 20 C 0.042 3.958 21 C 0.452 3.548 22 O -0.600 6.600 23 N -0.586 5.586 24 C -0.402 4.402 25 H 0.078 0.922 26 C -0.042 4.042 27 N -0.920 5.920 28 Si 1.130 2.870 29 H -0.278 1.278 30 H -0.269 1.269 31 H -0.275 1.275 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.206 0.794 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.381 0.619 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -16.512 -1.715 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.041 4.041 4 N -0.138 5.138 5 N -0.154 5.154 6 H 0.306 0.694 7 C -0.042 4.042 8 C -0.325 4.325 9 C 0.404 3.596 10 O -0.448 6.448 11 N -0.350 5.350 12 C -0.066 4.066 13 C -0.046 4.046 14 H 0.148 0.852 15 C -0.160 4.160 16 C 0.012 3.988 17 H 0.155 0.845 18 C -0.099 4.099 19 N -0.230 5.230 20 C -0.090 4.090 21 C 0.240 3.760 22 O -0.485 6.485 23 N -0.226 5.226 24 C -0.532 4.532 25 H 0.096 0.904 26 C -0.240 4.240 27 N -0.560 5.560 28 Si 0.950 3.050 29 H -0.203 1.203 30 H -0.195 1.195 31 H -0.200 1.200 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.215 0.785 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.848 -15.214 -2.752 16.203 hybrid contribution -0.488 -1.061 0.124 1.174 sum 4.360 -16.275 -2.629 17.053 Atomic orbital electron populations 1.21565 0.93441 1.02982 1.01024 1.20139 0.96925 0.87307 1.04178 1.22758 0.95073 0.97666 0.88621 1.77101 1.22354 0.91603 1.22780 1.46219 1.50159 1.13304 1.05724 0.69352 1.24036 0.95268 0.98927 0.85978 1.20293 1.21505 0.96564 0.94158 1.16952 0.76122 0.83316 0.83250 1.90707 1.49005 1.20782 1.84318 1.49361 1.65993 1.13167 1.06510 1.23713 1.00246 0.81853 1.00772 1.24779 0.91587 0.98479 0.89770 0.85161 1.23968 0.97226 0.92467 1.02292 1.24116 0.95837 1.00518 0.78305 0.84466 1.23790 0.96396 0.86862 1.02879 1.64749 1.02056 1.09199 1.47030 1.22080 0.98017 0.91182 0.97694 1.20419 0.86803 0.86703 0.82122 1.90462 1.25313 1.82579 1.50099 1.41998 1.22947 1.11941 1.45668 1.20497 1.08709 0.90678 1.33266 0.90351 1.27695 0.96130 1.07136 0.93027 1.70982 1.17269 1.25044 1.42666 0.82660 0.74916 0.70055 0.77328 1.20348 1.19453 1.20042 0.92931 0.89968 0.94124 0.89189 0.89131 0.77783 0.91019 0.89145 0.88691 0.87550 0.87278 0.92635 0.88116 0.91519 0.78537 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.89 71.98 0.71 -2.03 16 2 C -0.05 -1.04 5.97 29.85 0.18 -0.86 16 3 C 0.13 3.29 6.52 43.51 0.28 3.57 16 4 N -0.32 -8.00 12.63 -46.68 -0.59 -8.59 16 5 N -0.45 -9.14 7.29 -56.32 -0.41 -9.55 16 6 H 0.46 6.38 8.96 -213.43 -1.91 4.46 16 7 C 0.11 2.41 10.70 84.28 0.90 3.32 16 8 C -0.31 -8.05 6.11 -20.15 -0.12 -8.17 16 9 C 0.61 16.89 7.90 86.67 0.68 17.58 16 10 O -0.57 -17.98 15.27 -4.03 -0.06 -18.05 16 11 N -0.62 -14.68 3.01 -769.12 -2.31 -16.99 16 12 C 0.06 1.35 4.05 86.93 0.35 1.70 16 13 C 0.06 1.63 4.17 46.85 0.20 1.82 16 14 H 0.13 4.21 6.39 -2.39 -0.02 4.19 16 15 C -0.12 -2.38 6.80 33.47 0.23 -2.16 16 16 C 0.11 2.40 5.18 46.93 0.24 2.65 16 17 H 0.14 2.65 8.06 -2.39 -0.02 2.63 16 18 C 0.03 0.65 6.30 87.08 0.55 1.20 16 19 N -0.51 -14.32 5.16 -844.23 -4.36 -18.68 16 20 C 0.04 1.31 4.65 85.56 0.40 1.71 16 21 C 0.45 19.14 7.44 87.65 0.65 19.79 16 22 O -0.60 -29.01 13.59 -3.05 -0.04 -29.05 16 23 N -0.59 -27.36 5.28 -306.98 -1.62 -28.99 16 24 C -0.40 -21.31 9.68 84.04 0.81 -20.50 16 25 H 0.08 4.43 7.16 -2.91 -0.02 4.41 16 26 C -0.04 -2.14 5.50 84.93 0.47 -1.67 16 27 N -0.92 -49.33 13.68 21.66 0.30 -49.03 16 28 Si 1.13 46.06 29.92 68.60 2.05 48.11 16 29 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 30 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 31 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 2.21 6.56 -2.39 -0.02 2.19 16 37 H 0.21 3.74 4.55 -2.91 -0.01 3.73 16 38 H 0.07 1.85 4.41 -2.39 -0.01 1.84 16 39 H 0.09 1.83 6.87 -2.38 -0.02 1.81 16 40 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.32 7.62 -2.39 -0.02 1.31 16 44 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.07 1.94 5.65 -2.38 -0.01 1.93 16 46 H 0.38 16.71 6.73 -92.71 -0.62 16.09 16 47 H 0.26 13.41 6.78 -92.71 -0.63 12.78 16 Total: -1.00 -70.17 372.88 -1.85 -72.02 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -1.34 Total: 40.84 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.53 Total: 17.96 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -9.00 Total: -131.84 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.10 Total: -47.10 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.05 Total: 48.11 kcal Total: -70.17 -1.85 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665400833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.339 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds