Wall clock time and date at job start Wed Apr 1 2020 04:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39906 * 109.47245 * 2 1 4 4 F 1.39905 * 109.47366 * 240.00131 * 2 1 3 5 5 C 1.52995 * 109.47285 * 119.99928 * 2 1 3 6 6 C 1.53001 * 109.47647 * 179.97438 * 5 2 1 7 7 C 1.50696 * 109.47521 * 179.97438 * 6 5 2 8 8 O 1.21282 * 119.99549 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00262 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64831 * 354.96249 * 9 7 6 11 11 C 1.54905 * 104.83043 * 204.09039 * 10 9 7 12 12 C 1.55153 * 101.58410 * 322.98821 * 11 10 9 13 13 C 1.47020 * 125.65083 * 174.64977 * 9 7 6 14 14 H 1.09001 * 109.88268 * 59.56163 * 13 9 7 15 15 C 1.53004 * 109.88194 * 298.40003 * 13 9 7 16 16 N 1.46900 * 109.46857 * 175.60069 * 15 13 9 17 17 C 1.46898 * 110.99921 * 184.82097 * 16 15 13 18 18 C 1.50697 * 109.47272 * 180.02562 * 17 16 15 19 19 O 1.21295 * 120.00128 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00367 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00261 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00058 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99764 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00108 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47490 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47448 * 119.99927 * 25 23 21 28 28 H 1.48508 * 109.46820 * 239.99606 * 25 23 21 29 29 H 1.08997 * 109.47080 * 300.00573 * 1 2 3 30 30 H 1.09010 * 109.47170 * 60.00102 * 1 2 3 31 31 H 1.08993 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46967 * 300.00078 * 5 2 1 33 33 H 1.09002 * 109.47002 * 59.99814 * 5 2 1 34 34 H 1.09001 * 109.46704 * 300.00093 * 6 5 2 35 35 H 1.09002 * 109.47061 * 59.99864 * 6 5 2 36 36 H 1.09006 * 110.36547 * 322.92980 * 10 9 7 37 37 H 1.08997 * 110.36597 * 85.13912 * 10 9 7 38 38 H 1.08996 * 111.00558 * 81.06951 * 11 10 9 39 39 H 1.09011 * 110.99896 * 204.87689 * 11 10 9 40 40 H 1.08997 * 110.72350 * 153.86834 * 12 11 10 41 41 H 1.09001 * 110.71918 * 277.14546 * 12 11 10 42 42 H 1.08992 * 109.47030 * 295.60206 * 15 13 9 43 43 H 1.09001 * 109.47178 * 55.60366 * 15 13 9 44 44 H 1.00892 * 111.00240 * 308.78213 * 16 15 13 45 45 H 1.08993 * 109.47460 * 300.00511 * 17 16 15 46 46 H 1.09005 * 109.46810 * 60.00203 * 17 16 15 47 47 H 0.97006 * 119.99469 * 359.97438 * 20 18 17 48 48 H 0.97008 * 119.99617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5700 -0.7218 1.2490 7 6 4.0723 -1.4316 2.4797 8 8 3.2842 -1.8922 3.2782 9 7 5.3974 -1.5556 2.6926 10 6 6.4602 -1.1401 1.7591 11 6 7.6828 -2.0133 2.1362 12 6 7.5502 -2.0848 3.6804 13 6 6.0225 -2.1217 3.8968 14 1 5.6945 -3.1519 4.0354 15 6 5.6472 -1.2839 5.1208 16 7 6.1885 -1.9158 6.3314 17 6 5.7516 -1.2015 7.5384 18 6 6.3258 -1.8766 8.7572 19 8 7.0301 -2.8563 8.6326 20 7 6.0567 -1.3920 9.9857 21 6 6.5795 -2.0060 11.0945 22 1 7.2066 -2.8782 10.9835 23 6 6.3016 -1.5066 12.3610 24 7 5.5381 -0.4456 12.4960 25 14 7.0144 -2.3427 13.8717 26 1 7.8346 -3.5075 13.4522 27 1 7.8656 -1.3795 14.6153 28 1 5.9092 -2.8062 14.7487 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -0.2073 2.1392 33 1 1.6766 -1.7489 1.2492 34 1 3.9329 -1.2359 0.3590 35 1 3.9338 0.3057 1.2487 36 1 6.1583 -1.3342 0.7298 37 1 6.6908 -0.0832 1.8931 38 1 7.6066 -3.0053 1.6911 39 1 8.6144 -1.5274 1.8456 40 1 8.0187 -2.9902 4.0663 41 1 7.9805 -1.1981 4.1459 42 1 6.0634 -0.2819 5.0167 43 1 4.5618 -1.2202 5.1985 44 1 5.9327 -2.8907 6.3757 45 1 6.1009 -0.1699 7.4966 46 1 4.6631 -1.2145 7.5942 47 1 5.4938 -0.6083 10.0853 48 1 5.3445 -0.0967 13.3802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671312915.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:45 Heat of formation + Delta-G solvation = -182.504813 kcal Electronic energy + Delta-G solvation = -30399.234076 eV Core-core repulsion = 25738.243764 eV Total energy + Delta-G solvation = -4660.990312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.37543 -47.34541 -40.51380 -38.31735 -37.83765 -35.26296 -34.54696 -33.79912 -32.10579 -31.22620 -30.95221 -30.09845 -26.80814 -25.85876 -24.72852 -23.40184 -22.53395 -21.94243 -20.95824 -19.48780 -18.94684 -18.06157 -17.90182 -17.70010 -16.91246 -16.59393 -16.38136 -15.83428 -15.72607 -15.30891 -15.03564 -14.53214 -14.35131 -14.23414 -13.89910 -13.76788 -13.71780 -13.66813 -13.53181 -13.42718 -13.30215 -13.03361 -12.86588 -12.69322 -12.46891 -12.26150 -12.20286 -11.75007 -11.65857 -11.59531 -11.47775 -11.42849 -11.26395 -11.07850 -10.87678 -10.85701 -10.32671 -10.20401 -10.08102 -9.49648 -8.92194 -8.41345 -8.02774 -7.93188 -6.39396 -3.80094 2.35289 2.59876 3.18002 3.28253 3.34140 3.35822 3.67977 3.84494 3.94094 3.98960 4.14250 4.22272 4.28803 4.47306 4.53236 4.57018 4.70980 4.73883 4.91509 4.97652 5.03313 5.04966 5.14310 5.18422 5.22679 5.27806 5.35083 5.38668 5.45164 5.50450 5.55174 5.61818 5.77341 5.81666 5.85576 5.93399 6.02367 6.15449 6.20559 6.30973 7.18270 7.27799 7.57628 7.66991 7.89769 8.09049 8.63903 9.20300 9.57130 10.08546 10.78493 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.001845 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.064273 B =15169.252683 C =16479.481633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.286 3.714 3 F -0.201 7.201 4 F -0.202 7.202 5 C -0.145 4.145 6 C -0.141 4.141 7 C 0.531 3.469 8 O -0.535 6.535 9 N -0.615 5.615 10 C 0.098 3.902 11 C -0.136 4.136 12 C -0.114 4.114 13 C 0.139 3.861 14 H 0.077 0.923 15 C 0.050 3.950 16 N -0.663 5.663 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.349 0.651 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 3.292 -28.854 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.250 3.750 3 F -0.182 7.182 4 F -0.183 7.183 5 C -0.183 4.183 6 C -0.181 4.181 7 C 0.319 3.681 8 O -0.412 6.412 9 N -0.349 5.349 10 C -0.025 4.025 11 C -0.174 4.174 12 C -0.152 4.152 13 C 0.036 3.964 14 H 0.095 0.905 15 C -0.080 4.080 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.168 0.832 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.423 2.830 -28.409 29.061 hybrid contribution -0.872 0.107 0.787 1.179 sum -6.295 2.937 -27.622 28.482 Atomic orbital electron populations 1.22762 0.91294 1.05672 1.05496 1.21186 0.94057 0.75699 0.84102 1.93018 1.90564 1.37772 1.96876 1.93010 1.90582 1.80959 1.53780 1.22404 0.95600 1.03688 0.96638 1.21619 0.96067 1.02861 0.97581 1.20127 0.80700 0.79713 0.87530 1.90741 1.54317 1.48514 1.47617 1.48573 1.04976 1.62048 1.19337 1.22386 0.87612 0.99189 0.93323 1.22831 0.97444 1.00296 0.96872 1.22606 0.93464 1.04582 0.94577 1.21560 0.93317 0.97390 0.84168 0.90543 1.22267 0.98120 0.98119 0.89518 1.60075 1.62763 1.06902 0.99818 1.21655 0.97638 0.98737 0.90039 1.19793 0.86065 0.87244 0.84094 1.90516 1.41696 1.28489 1.86020 1.41872 1.45338 1.28424 1.04497 1.19756 1.27903 1.11658 0.83430 0.87852 1.25273 0.97118 0.96465 0.99225 1.69628 1.37351 1.22808 1.24561 0.85794 0.78605 0.79148 0.80746 1.19217 1.20762 1.20797 0.89021 0.89977 0.89084 0.87785 0.87878 0.88220 0.88052 0.90600 0.91026 0.90659 0.89647 0.89385 0.89749 0.91137 0.94204 0.83202 0.89697 0.93830 0.77461 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.92 9.38 37.16 0.35 -0.58 16 2 C 0.29 2.00 2.11 -26.73 -0.06 1.94 16 3 F -0.20 -1.73 16.54 2.25 0.04 -1.69 16 4 F -0.20 -1.68 16.54 2.25 0.04 -1.64 16 5 C -0.15 -1.07 4.09 -26.73 -0.11 -1.18 16 6 C -0.14 -1.09 4.55 -27.88 -0.13 -1.22 16 7 C 0.53 5.89 7.57 -10.99 -0.08 5.80 16 8 O -0.54 -7.94 15.17 5.56 0.08 -7.86 16 9 N -0.61 -6.19 3.06 -163.01 -0.50 -6.69 16 10 C 0.10 0.67 6.65 -2.53 -0.02 0.65 16 11 C -0.14 -0.92 7.09 -24.59 -0.17 -1.10 16 12 C -0.11 -1.11 6.29 -24.89 -0.16 -1.27 16 13 C 0.14 1.62 2.98 -66.95 -0.20 1.42 16 14 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 15 C 0.05 0.70 5.10 -3.82 -0.02 0.68 16 16 N -0.66 -11.15 5.95 -115.06 -0.68 -11.83 16 17 C 0.05 0.97 6.16 -4.98 -0.03 0.94 16 18 C 0.44 10.74 7.82 -10.99 -0.09 10.65 16 19 O -0.58 -16.07 15.78 5.54 0.09 -15.98 16 20 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.80 8.10 -51.92 -0.42 0.38 16 33 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.10 0.65 7.42 -51.93 -0.39 0.26 16 35 H 0.10 0.70 7.80 -51.93 -0.41 0.29 16 36 H 0.08 0.39 7.51 -51.93 -0.39 0.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 42 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.04 0.62 6.90 -51.93 -0.36 0.26 16 44 H 0.35 6.16 8.36 -39.30 -0.33 5.83 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -33.99 402.00 -7.78 -41.76 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.59 Total: 11.91 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.95 Total: 8.62 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.52 Total: -57.47 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.84 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.99 -7.78 -41.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671312915.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.742 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds