Wall clock time and date at job start Wed Apr 1 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39906 * 109.47245 * 2 1 4 4 F 1.39905 * 109.47366 * 240.00131 * 2 1 3 5 5 C 1.52995 * 109.47285 * 119.99928 * 2 1 3 6 6 C 1.53001 * 109.47647 * 179.97438 * 5 2 1 7 7 C 1.50696 * 109.47521 * 179.97438 * 6 5 2 8 8 O 1.21282 * 119.99549 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00262 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64831 * 354.96249 * 9 7 6 11 11 C 1.54905 * 104.83043 * 204.09039 * 10 9 7 12 12 C 1.55153 * 101.58410 * 322.98821 * 11 10 9 13 13 C 1.47020 * 125.65083 * 174.64977 * 9 7 6 14 14 H 1.09001 * 109.88268 * 59.56163 * 13 9 7 15 15 C 1.53004 * 109.88194 * 298.40003 * 13 9 7 16 16 N 1.46900 * 109.46857 * 175.60069 * 15 13 9 17 17 C 1.46898 * 110.99921 * 184.82097 * 16 15 13 18 18 C 1.50697 * 109.47272 * 180.02562 * 17 16 15 19 19 O 1.21295 * 120.00128 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00367 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00261 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00058 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99764 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00108 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47490 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47448 * 119.99927 * 25 23 21 28 28 H 1.48508 * 109.46820 * 239.99606 * 25 23 21 29 29 H 1.08997 * 109.47080 * 300.00573 * 1 2 3 30 30 H 1.09010 * 109.47170 * 60.00102 * 1 2 3 31 31 H 1.08993 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46967 * 300.00078 * 5 2 1 33 33 H 1.09002 * 109.47002 * 59.99814 * 5 2 1 34 34 H 1.09001 * 109.46704 * 300.00093 * 6 5 2 35 35 H 1.09002 * 109.47061 * 59.99864 * 6 5 2 36 36 H 1.09006 * 110.36547 * 322.92980 * 10 9 7 37 37 H 1.08997 * 110.36597 * 85.13912 * 10 9 7 38 38 H 1.08996 * 111.00558 * 81.06951 * 11 10 9 39 39 H 1.09011 * 110.99896 * 204.87689 * 11 10 9 40 40 H 1.08997 * 110.72350 * 153.86834 * 12 11 10 41 41 H 1.09001 * 110.71918 * 277.14546 * 12 11 10 42 42 H 1.08992 * 109.47030 * 295.60206 * 15 13 9 43 43 H 1.09001 * 109.47178 * 55.60366 * 15 13 9 44 44 H 1.00892 * 111.00240 * 308.78213 * 16 15 13 45 45 H 1.08993 * 109.47460 * 300.00511 * 17 16 15 46 46 H 1.09005 * 109.46810 * 60.00203 * 17 16 15 47 47 H 0.97006 * 119.99469 * 359.97438 * 20 18 17 48 48 H 0.97008 * 119.99617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5700 -0.7218 1.2490 7 6 4.0723 -1.4316 2.4797 8 8 3.2842 -1.8922 3.2782 9 7 5.3974 -1.5556 2.6926 10 6 6.4602 -1.1401 1.7591 11 6 7.6828 -2.0133 2.1362 12 6 7.5502 -2.0848 3.6804 13 6 6.0225 -2.1217 3.8968 14 1 5.6945 -3.1519 4.0354 15 6 5.6472 -1.2839 5.1208 16 7 6.1885 -1.9158 6.3314 17 6 5.7516 -1.2015 7.5384 18 6 6.3258 -1.8766 8.7572 19 8 7.0301 -2.8563 8.6326 20 7 6.0567 -1.3920 9.9857 21 6 6.5795 -2.0060 11.0945 22 1 7.2066 -2.8782 10.9835 23 6 6.3016 -1.5066 12.3610 24 7 5.5381 -0.4456 12.4960 25 14 7.0144 -2.3427 13.8717 26 1 7.8346 -3.5075 13.4522 27 1 7.8656 -1.3795 14.6153 28 1 5.9092 -2.8062 14.7487 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -0.2073 2.1392 33 1 1.6766 -1.7489 1.2492 34 1 3.9329 -1.2359 0.3590 35 1 3.9338 0.3057 1.2487 36 1 6.1583 -1.3342 0.7298 37 1 6.6908 -0.0832 1.8931 38 1 7.6066 -3.0053 1.6911 39 1 8.6144 -1.5274 1.8456 40 1 8.0187 -2.9902 4.0663 41 1 7.9805 -1.1981 4.1459 42 1 6.0634 -0.2819 5.0167 43 1 4.5618 -1.2202 5.1985 44 1 5.9327 -2.8907 6.3757 45 1 6.1009 -0.1699 7.4966 46 1 4.6631 -1.2145 7.5942 47 1 5.4938 -0.6083 10.0853 48 1 5.3445 -0.0967 13.3802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671312915.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:44 Heat of formation + Delta-G solvation = -206.145825 kcal Electronic energy + Delta-G solvation = -30400.259227 eV Core-core repulsion = 25738.243764 eV Total energy + Delta-G solvation = -4662.015464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96571 -47.94532 -41.36176 -40.17421 -38.80190 -36.65404 -35.81760 -35.16906 -33.30765 -32.85759 -31.63755 -31.03253 -28.28968 -26.54212 -26.30287 -24.63057 -23.42040 -22.51586 -21.75388 -21.18777 -20.09896 -19.80046 -18.64106 -18.51390 -17.99188 -17.47851 -17.16567 -17.08044 -16.70931 -16.54400 -16.40447 -16.00990 -15.70854 -15.27859 -15.05170 -14.94131 -14.92279 -14.36895 -14.31996 -14.20725 -14.07204 -14.04202 -13.67297 -13.49928 -13.37126 -13.30814 -13.21565 -13.13961 -12.87793 -12.85872 -12.69596 -12.42449 -12.29664 -12.11868 -12.04971 -11.84990 -11.81859 -11.59681 -11.53399 -10.98231 -10.40274 -10.04276 -9.74190 -9.44486 -8.48589 -5.97774 1.35717 1.40939 1.51067 1.55772 1.81301 2.01038 2.28146 2.77506 2.92168 3.17013 3.18047 3.31123 3.46607 3.47107 3.56604 3.67380 3.82929 3.88351 4.06000 4.13004 4.21600 4.23746 4.30738 4.38323 4.44629 4.46706 4.51108 4.59974 4.62742 4.66934 4.70733 4.82732 4.92251 4.93704 5.02863 5.03487 5.04305 5.16241 5.32030 5.39346 5.41660 5.78505 6.02472 6.24557 6.47404 6.56834 7.05854 7.09770 7.52417 8.07168 8.69145 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.001845 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.064273 B =15169.252683 C =16479.481633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.286 3.714 3 F -0.210 7.210 4 F -0.209 7.209 5 C -0.144 4.144 6 C -0.133 4.133 7 C 0.524 3.476 8 O -0.581 6.581 9 N -0.614 5.614 10 C 0.093 3.907 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.666 5.666 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.996 3.004 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.022 0.978 44 H 0.342 0.658 45 H 0.105 0.895 46 H 0.056 0.944 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 4.213 -30.243 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.250 3.750 3 F -0.192 7.192 4 F -0.190 7.190 5 C -0.182 4.182 6 C -0.173 4.173 7 C 0.315 3.685 8 O -0.461 6.461 9 N -0.347 5.347 10 C -0.028 4.028 11 C -0.164 4.164 12 C -0.151 4.151 13 C 0.035 3.965 14 H 0.075 0.925 15 C -0.070 4.070 16 N -0.299 5.299 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.040 0.960 44 H 0.160 0.840 45 H 0.123 0.877 46 H 0.074 0.926 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.154 3.791 -29.838 30.516 hybrid contribution -0.949 -0.178 1.187 1.530 sum -6.103 3.613 -28.651 29.516 Atomic orbital electron populations 1.22800 0.89536 1.06626 1.06189 1.21338 0.95265 0.75002 0.83438 1.92999 1.90815 1.38470 1.96882 1.92995 1.90807 1.81081 1.54161 1.22376 0.95519 1.03612 0.96696 1.21627 0.96193 1.03166 0.96303 1.20757 0.80620 0.79180 0.87970 1.90719 1.55544 1.50519 1.49356 1.48685 1.05458 1.61384 1.19201 1.22667 0.86439 0.99928 0.93765 1.22831 0.98525 1.00917 0.94086 1.22543 0.91538 1.03830 0.97161 1.21444 0.94864 0.95968 0.84225 0.92522 1.22240 0.96849 0.98756 0.89146 1.60095 1.63064 1.06528 1.00170 1.21516 0.97957 0.99029 0.88174 1.20722 0.84936 0.86592 0.85038 1.90484 1.43232 1.30171 1.86735 1.41937 1.45636 1.28636 1.04768 1.19728 1.29392 1.12140 0.85060 0.90159 1.26101 0.96988 0.96878 1.01510 1.69689 1.37450 1.23327 1.25712 0.84828 0.78127 0.78091 0.77009 1.19693 1.19464 1.19619 0.88262 0.89387 0.88058 0.88351 0.88058 0.86488 0.86806 0.88148 0.89601 0.90260 0.87408 0.90349 0.90261 0.90154 0.95972 0.84007 0.87651 0.92574 0.77030 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 9.38 71.98 0.68 -0.89 16 2 C 0.29 3.60 2.11 30.59 0.06 3.67 16 3 F -0.21 -3.31 16.54 44.97 0.74 -2.56 16 4 F -0.21 -3.13 16.54 44.97 0.74 -2.39 16 5 C -0.14 -1.98 4.09 30.59 0.13 -1.86 16 6 C -0.13 -1.84 4.55 29.85 0.14 -1.70 16 7 C 0.52 11.27 7.57 87.66 0.66 11.93 16 8 O -0.58 -17.59 15.17 -3.04 -0.05 -17.63 16 9 N -0.61 -11.62 3.06 -788.04 -2.41 -14.03 16 10 C 0.09 1.00 6.65 86.85 0.58 1.58 16 11 C -0.13 -1.38 7.09 31.98 0.23 -1.15 16 12 C -0.11 -2.08 6.29 31.78 0.20 -1.88 16 13 C 0.14 3.22 2.98 45.35 0.14 3.36 16 14 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 15 C 0.06 1.66 5.10 86.30 0.44 2.10 16 16 N -0.67 -22.64 5.95 -517.95 -3.08 -25.72 16 17 C 0.07 2.45 6.16 85.56 0.53 2.98 16 18 C 0.44 21.77 7.82 87.66 0.69 22.45 16 19 O -0.62 -35.18 15.78 -3.08 -0.05 -35.23 16 20 N -0.57 -30.37 5.29 -306.99 -1.62 -31.99 16 21 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 22 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.92 -50.61 13.05 21.66 0.28 -50.32 16 25 Si 1.00 43.56 29.55 68.60 2.03 45.58 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.47 8.10 -2.38 -0.02 1.46 16 33 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.12 1.22 7.42 -2.39 -0.02 1.20 16 35 H 0.11 1.31 7.80 -2.39 -0.02 1.29 16 36 H 0.10 0.64 7.51 -2.38 -0.02 0.62 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.56 7.77 -2.39 -0.02 1.54 16 42 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 43 H 0.02 0.70 6.90 -2.39 -0.02 0.68 16 44 H 0.34 12.47 8.36 -89.70 -0.75 11.72 16 45 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.40 20.02 7.90 -92.70 -0.73 19.28 16 48 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -74.65 402.00 1.83 -72.82 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.49 Total: 39.81 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 5.74 Total: 21.67 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.83 Total: -122.07 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.86 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.49 Total: -4.95 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.65 1.83 -72.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671312915.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.330 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds