Wall clock time and date at job start Wed Apr 1 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46509 * 119.99772 * 2 1 4 4 C 1.52996 * 109.46689 * 269.99875 * 3 2 1 5 5 H 1.09005 * 112.75074 * 75.77134 * 4 3 2 6 6 C 1.53516 * 113.52791 * 206.59191 * 4 3 2 7 7 C 1.53514 * 83.57600 * 140.80283 * 6 4 3 8 8 N 1.47481 * 113.47667 * 304.99738 * 4 3 2 9 9 C 1.46902 * 110.99598 * 106.47700 * 8 4 3 10 10 C 1.50708 * 109.46915 * 170.00042 * 9 8 4 11 11 O 1.21295 * 119.99833 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99998 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99950 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00404 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99865 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00215 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99916 * 179.72225 * 15 13 12 18 18 H 1.48500 * 109.47497 * 180.27510 * 17 15 13 19 19 H 1.48493 * 109.47351 * 300.28076 * 17 15 13 20 20 H 1.48508 * 109.46851 * 60.27569 * 17 15 13 21 21 C 1.34774 * 120.00316 * 179.97438 * 2 1 3 22 22 O 1.21276 * 120.00108 * 174.45147 * 21 2 1 23 23 C 1.50694 * 119.99834 * 354.44818 * 21 2 1 24 24 C 1.53002 * 109.47704 * 296.65912 * 23 21 2 25 25 C 1.53007 * 109.47312 * 56.65532 * 23 21 2 26 26 C 1.52998 * 109.47496 * 176.65418 * 23 21 2 27 27 F 1.39898 * 109.47106 * 59.99962 * 26 23 21 28 28 F 1.39902 * 109.47651 * 180.02562 * 26 23 21 29 29 H 1.09002 * 109.47044 * 85.86725 * 1 2 3 30 30 H 1.09000 * 109.46855 * 205.86728 * 1 2 3 31 31 H 1.08999 * 109.47329 * 325.86973 * 1 2 3 32 32 H 1.08994 * 109.46933 * 150.00024 * 3 2 1 33 33 H 1.08997 * 109.47015 * 29.99385 * 3 2 1 34 34 H 1.09007 * 114.17040 * 254.44617 * 6 4 3 35 35 H 1.08993 * 114.16947 * 26.96212 * 6 4 3 36 36 H 1.09005 * 113.47709 * 219.21291 * 7 6 4 37 37 H 1.08993 * 113.48009 * 88.74261 * 7 6 4 38 38 H 1.08994 * 109.47773 * 49.99859 * 9 8 4 39 39 H 1.08999 * 109.47110 * 289.99241 * 9 8 4 40 40 H 0.96997 * 119.99832 * 359.97438 * 12 10 9 41 41 H 0.96999 * 119.99600 * 359.72306 * 16 15 13 42 42 H 1.09002 * 109.47001 * 43.57738 * 24 23 21 43 43 H 1.08991 * 109.47500 * 163.58838 * 24 23 21 44 44 H 1.09003 * 109.46579 * 283.58844 * 24 23 21 45 45 H 1.09004 * 109.46892 * 59.99546 * 25 23 21 46 46 H 1.08998 * 109.47273 * 179.97438 * 25 23 21 47 47 H 1.09004 * 109.47076 * 299.99938 * 25 23 21 48 48 H 1.09004 * 109.46773 * 300.00494 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5624 2.1175 -1.9223 6 6 3.6935 2.6000 -1.6008 7 6 3.8966 1.7909 -2.8895 8 7 3.1443 0.6924 -2.2550 9 6 2.2216 0.0656 -3.2108 10 6 3.0031 -0.7821 -4.1814 11 8 4.2101 -0.8562 -4.0865 12 7 2.3609 -1.4577 -5.1548 13 6 3.0719 -2.2283 -6.0381 14 1 4.1466 -2.2944 -5.9536 15 6 2.4097 -2.9253 -7.0413 16 7 1.1021 -2.8454 -7.1438 17 14 3.3792 -3.9692 -8.2496 18 1 2.4469 -4.5997 -9.2183 19 1 4.3464 -3.1113 -8.9800 20 1 4.1152 -5.0265 -7.5108 21 6 2.1390 -1.1671 0.0005 22 8 3.3474 -1.1696 -0.1010 23 6 1.3908 -2.4691 0.1274 24 6 0.6864 -2.5225 1.4845 25 6 0.3515 -2.5712 -0.9909 26 6 2.3747 -3.6356 0.0172 27 9 3.3249 -3.5423 1.0397 28 9 1.6801 -4.8443 0.1344 29 1 -0.3633 0.0741 -1.0250 30 1 -0.3633 -0.9247 0.4484 31 1 -0.3634 0.8506 0.5766 32 1 3.1499 1.1385 0.5138 33 1 1.6084 2.0285 0.5137 34 1 3.4692 3.6538 -1.7662 35 1 4.4592 2.4369 -0.8425 36 1 4.9398 1.5448 -3.0879 37 1 3.3920 2.2194 -3.7554 38 1 1.6826 0.8397 -3.7568 39 1 1.5107 -0.5610 -2.6720 40 1 1.3957 -1.3987 -5.2304 41 1 0.5987 -2.3030 -6.5166 42 1 0.2163 -1.5604 1.6880 43 1 -0.0746 -3.3027 1.4685 44 1 1.4159 -2.7425 2.2640 45 1 0.8533 -2.5331 -1.9578 46 1 -0.1893 -3.5131 -0.8994 47 1 -0.3495 -1.7402 -0.9124 48 1 2.8765 -3.5975 -0.9497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688888809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:22 Heat of formation + Delta-G solvation = -107.956697 kcal Electronic energy + Delta-G solvation = -33847.434158 eV Core-core repulsion = 29189.676495 eV Total energy + Delta-G solvation = -4657.757663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.87063 -46.80674 -40.82527 -39.63631 -37.85448 -35.88169 -35.07335 -34.24296 -31.31075 -30.55874 -29.00162 -27.77748 -27.13272 -26.01371 -25.57936 -23.84476 -23.61814 -21.70143 -19.71862 -19.52756 -19.35691 -17.90000 -17.51411 -17.11797 -16.91374 -16.32620 -16.16826 -16.00943 -15.71385 -15.36533 -14.61114 -14.38734 -14.31284 -14.16844 -13.94699 -13.83628 -13.69368 -13.53274 -13.40684 -13.17075 -12.84484 -12.63940 -12.46953 -12.37901 -12.29508 -12.12915 -11.71028 -11.69414 -11.54283 -11.41032 -11.27779 -11.19081 -10.95218 -10.79916 -10.58103 -10.43793 -10.19884 -9.84735 -9.53707 -9.51820 -8.88989 -8.44753 -8.23011 -8.01382 -6.74015 -3.86825 2.67412 2.80118 3.32150 3.35890 3.55868 3.67742 3.85588 3.99129 4.13182 4.30837 4.33805 4.40200 4.50910 4.66846 4.76081 4.82200 4.92230 5.02069 5.08795 5.11624 5.19549 5.21494 5.23801 5.27407 5.32389 5.42711 5.45515 5.47182 5.50990 5.58363 5.58980 5.71127 5.77439 5.81947 5.85186 5.97977 6.02777 6.12582 6.28748 6.41902 6.67189 7.22942 7.33389 7.82246 8.09506 8.23643 8.61538 8.82795 9.48904 9.91068 10.69380 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.004484 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.772275 B = 6242.388270 C = 8003.865319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.612 5.612 3 C 0.140 3.860 4 C 0.001 3.999 5 H 0.072 0.928 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.413 5.413 9 C 0.013 3.987 10 C 0.448 3.552 11 O -0.564 6.564 12 N -0.580 5.580 13 C -0.379 4.379 14 H 0.098 0.902 15 C -0.009 4.009 16 N -0.903 5.903 17 Si 1.089 2.911 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.527 3.473 22 O -0.484 6.484 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.167 4.167 26 C 0.286 3.714 27 F -0.194 7.194 28 F -0.203 7.203 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.373 0.627 41 H 0.259 0.741 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 8.231 16.917 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.347 5.347 3 C 0.017 3.983 4 C -0.111 4.111 5 H 0.090 0.910 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.135 5.135 9 C -0.120 4.120 10 C 0.233 3.767 11 O -0.446 6.446 12 N -0.219 5.219 13 C -0.508 4.508 14 H 0.115 0.885 15 C -0.211 4.211 16 N -0.542 5.542 17 Si 0.915 3.085 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.312 3.688 22 O -0.355 6.355 23 C -0.136 4.136 24 C -0.210 4.210 25 C -0.224 4.224 26 C 0.231 3.769 27 F -0.175 7.175 28 F -0.184 7.184 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.206 0.794 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.828 6.524 15.911 18.157 hybrid contribution -1.221 1.580 0.740 2.129 sum -7.049 8.103 16.651 19.814 Atomic orbital electron populations 1.22442 0.80435 1.03797 1.02022 1.47486 1.06226 1.05750 1.75258 1.21448 0.97712 0.83894 0.95275 1.23925 0.96863 0.93822 0.96448 0.90983 1.23173 0.97424 0.97666 0.99217 1.23586 1.02051 0.91102 0.95168 1.68980 1.14267 1.16748 1.13533 1.22479 0.95818 0.98719 0.94952 1.19613 0.88583 0.84803 0.83682 1.90551 1.13985 1.66278 1.73797 1.41938 1.08569 1.43405 1.27948 1.20509 0.94829 1.25543 1.09954 0.88451 1.26460 0.96951 0.98810 0.98911 1.70914 1.06045 1.39407 1.37861 0.83156 0.74372 0.75685 0.75237 1.20414 1.21065 1.20993 1.19767 0.87760 0.84199 0.77106 1.90851 1.13241 1.86207 1.45166 1.21799 0.97565 0.93892 1.00343 1.22076 1.01247 1.03710 0.93936 1.22400 0.98178 1.04752 0.97076 1.21492 0.83519 0.80292 0.91572 1.92975 1.65585 1.96112 1.62808 1.92955 1.80493 1.47875 1.97115 0.92471 0.88941 0.91323 0.89290 0.90483 0.90979 0.88773 0.89155 0.92158 0.93505 0.90128 0.79446 0.92946 0.90277 0.90526 0.91134 0.90967 0.90351 0.89244 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 8.17 59.85 0.49 0.89 16 2 N -0.61 -6.74 2.71 -181.57 -0.49 -7.24 16 3 C 0.14 1.49 5.60 -4.04 -0.02 1.46 16 4 C 0.00 0.01 3.37 -71.43 -0.24 -0.23 16 5 H 0.07 0.79 7.77 -51.93 -0.40 0.38 16 6 C -0.14 -1.59 8.00 -26.20 -0.21 -1.80 16 7 C 0.01 0.16 6.71 -7.53 -0.05 0.11 16 8 N -0.41 -7.07 4.42 -237.91 -1.05 -8.13 16 9 C 0.01 0.23 5.31 -4.97 -0.03 0.20 16 10 C 0.45 10.86 7.62 -10.98 -0.08 10.78 16 11 O -0.56 -16.03 15.34 5.54 0.09 -15.94 16 12 N -0.58 -14.71 5.28 -10.96 -0.06 -14.77 16 13 C -0.38 -10.77 9.68 -14.93 -0.14 -10.91 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 15 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 16 N -0.90 -25.24 13.68 55.50 0.76 -24.48 16 17 Si 1.09 24.63 29.92 -169.99 -5.09 19.54 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.53 7.58 5.54 -10.99 -0.06 7.52 16 22 O -0.48 -9.24 14.11 5.56 0.08 -9.17 16 23 C -0.13 -1.63 0.46 -155.66 -0.07 -1.70 16 24 C -0.15 -1.43 7.83 37.16 0.29 -1.14 16 25 C -0.17 -1.84 7.83 37.16 0.29 -1.55 16 26 C 0.29 4.30 3.81 37.16 0.14 4.44 16 27 F -0.19 -3.24 15.59 2.25 0.04 -3.20 16 28 F -0.20 -2.95 16.54 2.25 0.04 -2.92 16 29 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 30 H 0.09 0.58 3.10 -51.93 -0.16 0.42 16 31 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 32 H 0.09 1.12 7.24 -51.93 -0.38 0.74 16 33 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.11 7.94 -51.93 -0.41 0.70 16 36 H 0.09 1.66 8.13 -51.93 -0.42 1.24 16 37 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 38 H 0.05 0.77 7.56 -51.93 -0.39 0.38 16 39 H 0.08 1.35 6.86 -51.93 -0.36 1.00 16 40 H 0.37 8.71 6.73 -40.82 -0.27 8.44 16 41 H 0.26 6.95 6.77 -40.82 -0.28 6.67 16 42 H 0.08 0.58 5.33 -51.93 -0.28 0.30 16 43 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.07 0.74 7.40 -51.93 -0.38 0.35 16 45 H 0.07 0.99 7.39 -51.93 -0.38 0.61 16 46 H 0.08 0.79 7.80 -51.93 -0.41 0.39 16 47 H 0.09 0.75 3.99 -51.93 -0.21 0.54 16 48 H 0.12 1.96 8.13 -51.93 -0.42 1.54 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -36.38 380.90 -6.53 -42.91 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.78 Total: 9.91 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 0.21 Total: 7.73 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.84 Total: -54.61 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.16 Total: -25.11 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.07 Total: -6.12 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.38 -6.53 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688888809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.047 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds