Wall clock time and date at job start Wed Apr 1 2020 04:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46509 * 119.99772 * 2 1 4 4 C 1.52996 * 109.46689 * 269.99875 * 3 2 1 5 5 H 1.09005 * 112.75074 * 75.77134 * 4 3 2 6 6 C 1.53516 * 113.52791 * 206.59191 * 4 3 2 7 7 C 1.53514 * 83.57600 * 140.80283 * 6 4 3 8 8 N 1.47481 * 113.47667 * 304.99738 * 4 3 2 9 9 C 1.46902 * 110.99598 * 106.47700 * 8 4 3 10 10 C 1.50708 * 109.46915 * 170.00042 * 9 8 4 11 11 O 1.21295 * 119.99833 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99998 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99950 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00404 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99865 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00215 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99916 * 179.72225 * 15 13 12 18 18 H 1.48500 * 109.47497 * 180.27510 * 17 15 13 19 19 H 1.48493 * 109.47351 * 300.28076 * 17 15 13 20 20 H 1.48508 * 109.46851 * 60.27569 * 17 15 13 21 21 C 1.34774 * 120.00316 * 179.97438 * 2 1 3 22 22 O 1.21276 * 120.00108 * 174.45147 * 21 2 1 23 23 C 1.50694 * 119.99834 * 354.44818 * 21 2 1 24 24 C 1.53002 * 109.47704 * 296.65912 * 23 21 2 25 25 C 1.53007 * 109.47312 * 56.65532 * 23 21 2 26 26 C 1.52998 * 109.47496 * 176.65418 * 23 21 2 27 27 F 1.39898 * 109.47106 * 59.99962 * 26 23 21 28 28 F 1.39902 * 109.47651 * 180.02562 * 26 23 21 29 29 H 1.09002 * 109.47044 * 85.86725 * 1 2 3 30 30 H 1.09000 * 109.46855 * 205.86728 * 1 2 3 31 31 H 1.08999 * 109.47329 * 325.86973 * 1 2 3 32 32 H 1.08994 * 109.46933 * 150.00024 * 3 2 1 33 33 H 1.08997 * 109.47015 * 29.99385 * 3 2 1 34 34 H 1.09007 * 114.17040 * 254.44617 * 6 4 3 35 35 H 1.08993 * 114.16947 * 26.96212 * 6 4 3 36 36 H 1.09005 * 113.47709 * 219.21291 * 7 6 4 37 37 H 1.08993 * 113.48009 * 88.74261 * 7 6 4 38 38 H 1.08994 * 109.47773 * 49.99859 * 9 8 4 39 39 H 1.08999 * 109.47110 * 289.99241 * 9 8 4 40 40 H 0.96997 * 119.99832 * 359.97438 * 12 10 9 41 41 H 0.96999 * 119.99600 * 359.72306 * 16 15 13 42 42 H 1.09002 * 109.47001 * 43.57738 * 24 23 21 43 43 H 1.08991 * 109.47500 * 163.58838 * 24 23 21 44 44 H 1.09003 * 109.46579 * 283.58844 * 24 23 21 45 45 H 1.09004 * 109.46892 * 59.99546 * 25 23 21 46 46 H 1.08998 * 109.47273 * 179.97438 * 25 23 21 47 47 H 1.09004 * 109.47076 * 299.99938 * 25 23 21 48 48 H 1.09004 * 109.46773 * 300.00494 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5624 2.1175 -1.9223 6 6 3.6935 2.6000 -1.6008 7 6 3.8966 1.7909 -2.8895 8 7 3.1443 0.6924 -2.2550 9 6 2.2216 0.0656 -3.2108 10 6 3.0031 -0.7821 -4.1814 11 8 4.2101 -0.8562 -4.0865 12 7 2.3609 -1.4577 -5.1548 13 6 3.0719 -2.2283 -6.0381 14 1 4.1466 -2.2944 -5.9536 15 6 2.4097 -2.9253 -7.0413 16 7 1.1021 -2.8454 -7.1438 17 14 3.3792 -3.9692 -8.2496 18 1 2.4469 -4.5997 -9.2183 19 1 4.3464 -3.1113 -8.9800 20 1 4.1152 -5.0265 -7.5108 21 6 2.1390 -1.1671 0.0005 22 8 3.3474 -1.1696 -0.1010 23 6 1.3908 -2.4691 0.1274 24 6 0.6864 -2.5225 1.4845 25 6 0.3515 -2.5712 -0.9909 26 6 2.3747 -3.6356 0.0172 27 9 3.3249 -3.5423 1.0397 28 9 1.6801 -4.8443 0.1344 29 1 -0.3633 0.0741 -1.0250 30 1 -0.3633 -0.9247 0.4484 31 1 -0.3634 0.8506 0.5766 32 1 3.1499 1.1385 0.5138 33 1 1.6084 2.0285 0.5137 34 1 3.4692 3.6538 -1.7662 35 1 4.4592 2.4369 -0.8425 36 1 4.9398 1.5448 -3.0879 37 1 3.3920 2.2194 -3.7554 38 1 1.6826 0.8397 -3.7568 39 1 1.5107 -0.5610 -2.6720 40 1 1.3957 -1.3987 -5.2304 41 1 0.5987 -2.3030 -6.5166 42 1 0.2163 -1.5604 1.6880 43 1 -0.0746 -3.3027 1.4685 44 1 1.4159 -2.7425 2.2640 45 1 0.8533 -2.5331 -1.9578 46 1 -0.1893 -3.5131 -0.8994 47 1 -0.3495 -1.7402 -0.9124 48 1 2.8765 -3.5975 -0.9497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688888809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:21 Heat of formation + Delta-G solvation = -135.264049 kcal Electronic energy + Delta-G solvation = -33848.618294 eV Core-core repulsion = 29189.676495 eV Total energy + Delta-G solvation = -4658.941799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.11781 -48.06682 -41.91332 -40.85721 -39.70256 -36.93737 -36.39886 -35.94940 -33.27588 -32.03384 -29.94582 -28.59252 -28.02737 -27.34007 -27.00931 -25.38172 -24.89239 -22.69596 -21.56451 -20.63883 -20.33933 -20.00410 -18.66529 -18.35061 -18.19959 -17.84532 -17.40772 -17.09048 -17.03042 -16.40289 -16.25555 -16.01205 -15.50931 -15.43241 -15.36229 -15.02708 -14.77055 -14.64406 -14.59112 -14.41581 -14.17122 -13.86814 -13.67480 -13.41320 -13.36328 -13.32193 -13.02729 -12.89255 -12.81808 -12.62574 -12.47019 -12.37972 -12.23502 -11.98581 -11.95309 -11.89608 -11.62632 -11.55728 -11.45132 -10.60507 -10.45103 -10.13532 -9.82539 -9.41027 -8.95626 -6.09073 1.48535 1.50660 1.64355 1.78711 1.88811 1.96915 2.36553 2.58404 2.77538 3.04794 3.12154 3.18226 3.30066 3.37096 3.53224 3.74527 3.79927 3.97711 4.02699 4.07734 4.15697 4.20730 4.25120 4.27956 4.32124 4.42452 4.50899 4.53613 4.57874 4.65459 4.67304 4.72910 4.79867 4.89700 4.94925 4.96826 5.10411 5.16273 5.22438 5.38319 5.57499 5.67999 5.92593 6.09092 6.39029 6.55191 6.72812 7.23663 7.40179 7.91259 8.52164 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.004484 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.772275 B = 6242.388270 C = 8003.865319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.605 5.605 3 C 0.138 3.862 4 C 0.009 3.991 5 H 0.100 0.900 6 C -0.113 4.113 7 C -0.003 4.003 8 N -0.450 5.450 9 C 0.031 3.969 10 C 0.443 3.557 11 O -0.613 6.613 12 N -0.586 5.586 13 C -0.409 4.409 14 H 0.066 0.934 15 C -0.038 4.038 16 N -0.912 5.912 17 Si 1.130 2.870 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.277 1.277 21 C 0.519 3.481 22 O -0.545 6.545 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.163 4.163 26 C 0.280 3.720 27 F -0.206 7.206 28 F -0.200 7.200 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.383 0.617 41 H 0.259 0.741 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.124 0.876 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 10.118 18.183 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.337 5.337 3 C 0.015 3.985 4 C -0.101 4.101 5 H 0.118 0.882 6 C -0.151 4.151 7 C -0.133 4.133 8 N -0.173 5.173 9 C -0.101 4.101 10 C 0.231 3.769 11 O -0.498 6.498 12 N -0.225 5.225 13 C -0.538 4.538 14 H 0.084 0.916 15 C -0.236 4.236 16 N -0.552 5.552 17 Si 0.950 3.050 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.203 1.203 21 C 0.306 3.694 22 O -0.421 6.421 23 C -0.129 4.129 24 C -0.203 4.203 25 C -0.220 4.220 26 C 0.226 3.774 27 F -0.187 7.187 28 F -0.181 7.181 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.217 0.783 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.142 0.858 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.301 8.451 17.200 21.301 hybrid contribution -0.144 1.017 0.382 1.096 sum -9.445 9.468 17.582 22.090 Atomic orbital electron populations 1.22766 0.77541 1.06062 1.03382 1.47568 1.07986 1.04771 1.73414 1.21583 0.97783 0.84745 0.94378 1.24050 0.97595 0.91897 0.96552 0.88222 1.23067 0.96945 0.99137 0.95908 1.23628 0.99726 0.92269 0.97631 1.69013 1.15621 1.18735 1.13888 1.22313 0.95262 0.98500 0.94034 1.20799 0.88484 0.84080 0.83552 1.90520 1.16592 1.67726 1.74952 1.41952 1.08948 1.43540 1.28103 1.20436 0.93883 1.27670 1.11855 0.91631 1.27715 0.97221 0.98969 0.99715 1.70974 1.06323 1.39732 1.38129 0.82681 0.73754 0.74780 0.73821 1.19208 1.19956 1.20263 1.20154 0.87242 0.85683 0.76361 1.90831 1.15875 1.87158 1.48258 1.21777 0.96856 0.91495 1.02810 1.22115 1.01014 1.06026 0.91183 1.22455 0.97974 1.06912 0.94620 1.21511 0.84134 0.81821 0.89950 1.92943 1.66444 1.96254 1.63073 1.92950 1.80216 1.47937 1.97021 0.91700 0.87983 0.87648 0.91848 0.85520 0.87264 0.89388 0.93364 0.91778 0.90966 0.88606 0.78268 0.92983 0.87387 0.88762 0.92510 0.94350 0.89267 0.85826 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 8.17 127.77 1.04 1.44 16 2 N -0.60 -11.46 2.71 -846.77 -2.29 -13.76 16 3 C 0.14 2.46 5.60 86.38 0.48 2.95 16 4 C 0.01 0.19 3.37 42.19 0.14 0.34 16 5 H 0.10 1.63 7.77 -2.38 -0.02 1.61 16 6 C -0.11 -2.37 8.00 30.94 0.25 -2.13 16 7 C 0.00 -0.10 6.71 83.58 0.56 0.46 16 8 N -0.45 -15.31 4.42 -906.62 -4.01 -19.32 16 9 C 0.03 1.10 5.31 85.56 0.45 1.56 16 10 C 0.44 22.32 7.62 87.66 0.67 22.99 16 11 O -0.61 -37.01 15.34 -3.08 -0.05 -37.06 16 12 N -0.59 -30.67 5.28 -306.97 -1.62 -32.29 16 13 C -0.41 -24.14 9.68 84.04 0.81 -23.33 16 14 H 0.07 4.23 7.16 -2.91 -0.02 4.21 16 15 C -0.04 -2.08 5.50 84.93 0.47 -1.61 16 16 N -0.91 -50.91 13.68 21.66 0.30 -50.62 16 17 Si 1.13 49.88 29.92 68.60 2.05 51.94 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 C 0.52 14.67 5.54 87.66 0.49 15.16 16 22 O -0.55 -21.78 14.11 -3.02 -0.04 -21.82 16 23 C -0.13 -3.00 0.46 -52.93 -0.02 -3.03 16 24 C -0.15 -2.38 7.83 71.98 0.56 -1.81 16 25 C -0.16 -3.33 7.83 71.98 0.56 -2.76 16 26 C 0.28 8.88 3.81 71.98 0.27 9.15 16 27 F -0.21 -7.29 15.59 44.97 0.70 -6.59 16 28 F -0.20 -5.92 16.54 44.97 0.74 -5.18 16 29 H 0.06 0.57 7.49 -2.39 -0.02 0.55 16 30 H 0.10 0.74 3.10 -2.39 -0.01 0.73 16 31 H 0.11 0.30 7.95 -2.39 -0.02 0.28 16 32 H 0.06 1.51 7.24 -2.39 -0.02 1.49 16 33 H 0.13 1.07 7.93 -2.39 -0.02 1.05 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.99 7.94 -2.39 -0.02 1.97 16 36 H 0.05 1.91 8.13 -2.38 -0.02 1.90 16 37 H 0.06 1.97 7.70 -2.39 -0.02 1.95 16 38 H 0.07 2.21 7.56 -2.39 -0.02 2.19 16 39 H 0.10 3.11 6.86 -2.39 -0.02 3.10 16 40 H 0.38 18.17 6.73 -92.71 -0.62 17.55 16 41 H 0.26 13.91 6.77 -92.71 -0.63 13.28 16 42 H 0.11 1.11 5.33 -2.39 -0.01 1.09 16 43 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 44 H 0.06 1.11 7.40 -2.39 -0.02 1.09 16 45 H 0.04 1.05 7.39 -2.38 -0.02 1.03 16 46 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 47 H 0.12 1.61 3.99 -2.39 -0.01 1.61 16 48 H 0.09 3.20 8.13 -2.38 -0.02 3.18 16 Total: -1.00 -86.79 380.90 3.05 -83.74 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.52 Total: 31.60 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.74 Total: 19.36 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -7.63 Total: -115.99 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.09 Total: -58.88 kcal Atomic # 9 Polarization: -13.22 SS G_CDS: 1.44 Total: -11.77 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.94 kcal Total: -86.79 3.05 -83.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688888809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.525 kcal (2) G-P(sol) polarization free energy of solvation -86.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds