Wall clock time and date at job start Wed Apr 1 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31912 * 119.03988 * 2 1 4 4 C 1.32172 * 121.03418 * 179.97438 * 3 2 1 5 5 C 1.38801 * 119.14839 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.26058 * 0.02562 * 5 4 3 7 7 C 1.48461 * 120.55113 * 179.72360 * 6 5 4 8 8 O 1.21479 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00438 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00186 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47075 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.84993 * 316.19493 * 11 10 9 13 13 C 1.53780 * 113.61976 * 87.50070 * 11 10 9 14 14 C 1.53780 * 87.08149 * 89.11620 * 13 11 10 15 15 H 1.08999 * 113.61429 * 270.89021 * 14 13 11 16 16 N 1.46898 * 113.61487 * 139.98198 * 14 13 11 17 17 C 1.46897 * 110.99791 * 107.50290 * 16 14 13 18 18 C 1.50704 * 109.47156 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99709 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00058 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99869 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00111 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00366 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47524 * 89.99445 * 25 23 21 27 27 H 1.48500 * 109.47144 * 209.99734 * 25 23 21 28 28 H 1.48510 * 109.46798 * 329.99353 * 25 23 21 29 29 C 1.53780 * 87.08146 * 25.43326 * 14 13 11 30 30 N 1.31546 * 119.04157 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47375 * 89.99822 * 1 2 3 32 32 H 1.08997 * 109.47057 * 209.99916 * 1 2 3 33 33 H 1.09007 * 109.47385 * 329.99592 * 1 2 3 34 34 H 1.08004 * 120.42722 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.87455 * 180.02562 * 5 4 3 36 36 H 0.97006 * 119.99264 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.46824 * 300.00240 * 10 9 7 38 38 H 1.08993 * 109.46978 * 60.00537 * 10 9 7 39 39 H 1.09000 * 113.61352 * 203.66778 * 13 11 10 40 40 H 1.09001 * 113.61403 * 334.56807 * 13 11 10 41 41 H 1.00904 * 110.99914 * 343.54962 * 16 14 13 42 42 H 1.08995 * 109.47585 * 299.99969 * 17 16 14 43 43 H 1.09005 * 109.47231 * 60.00092 * 17 16 14 44 44 H 0.96995 * 120.00243 * 0.02562 * 20 18 17 45 45 H 0.97002 * 120.00088 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.61961 * 220.01670 * 29 14 13 47 47 H 1.09006 * 113.61623 * 89.11447 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 0.0005 5 6 4.1861 0.0113 0.0016 6 6 3.4760 -1.1894 0.0015 7 6 4.1924 -2.4897 -0.0035 8 8 5.4070 -2.5140 -0.0072 9 7 3.4954 -3.6432 -0.0030 10 6 4.2024 -4.9263 -0.0074 11 6 3.1851 -6.0691 -0.0064 12 1 2.3642 -5.9045 0.6917 13 6 2.7254 -6.4860 -1.4134 14 6 3.9086 -7.4682 -1.4235 15 1 4.8311 -7.0365 -1.8116 16 7 3.5883 -8.7691 -2.0258 17 6 4.2248 -8.9108 -3.3421 18 6 3.8748 -10.2547 -3.9273 19 8 3.1647 -11.0191 -3.3089 20 7 4.3510 -10.6072 -5.1379 21 6 4.0322 -11.8297 -5.6705 22 1 3.3998 -12.5103 -5.1198 23 6 4.5235 -12.1934 -6.9182 24 7 5.2933 -11.3653 -7.5881 25 14 4.0886 -13.8586 -7.6443 26 1 2.8434 -13.7398 -8.4447 27 1 5.1963 -14.3223 -8.5179 28 1 3.8803 -14.8377 -6.5472 29 6 3.8243 -7.4628 0.1120 30 7 2.1456 -1.1501 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 3.9825 2.1490 0.0009 35 1 5.2660 0.0164 0.0024 36 1 2.5256 -3.6238 0.0003 37 1 4.8248 -4.9951 -0.8995 38 1 4.8306 -4.9980 0.8804 39 1 1.7515 -6.9753 -1.4274 40 1 2.8114 -5.6911 -2.1542 41 1 2.5901 -8.9017 -2.0906 42 1 3.8688 -8.1218 -4.0046 43 1 5.3065 -8.8330 -3.2329 44 1 4.9192 -9.9961 -5.6323 45 1 5.6360 -11.6191 -8.4594 46 1 4.7976 -7.4565 0.6028 47 1 3.1509 -8.2192 0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688950741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:59 Heat of formation + Delta-G solvation = -1.962226 kcal Electronic energy + Delta-G solvation = -28441.151769 eV Core-core repulsion = 24238.679557 eV Total energy + Delta-G solvation = -4202.472212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79426 -40.20696 -39.24546 -38.05120 -35.27820 -34.45752 -33.99349 -33.78488 -33.13543 -31.19414 -29.05767 -28.48925 -26.61556 -25.79884 -25.43981 -24.11786 -23.45425 -22.45991 -21.25627 -19.68551 -19.12627 -18.47158 -17.95930 -17.83087 -16.66813 -16.21386 -16.05545 -16.04365 -15.66003 -15.41569 -15.33696 -14.93472 -14.55485 -14.34718 -14.11205 -13.95868 -13.93341 -13.54197 -13.22653 -13.11398 -12.93398 -12.72224 -12.57149 -12.30637 -11.81654 -11.59626 -11.55037 -11.54032 -11.39200 -11.21076 -11.03288 -10.86049 -10.55102 -10.40562 -10.38087 -10.20293 -10.09523 -9.88070 -9.50324 -9.47846 -8.43571 -8.00679 -7.93984 -6.40953 -3.81839 -0.05600 0.33107 2.26093 2.48137 3.18325 3.22887 3.23936 3.26932 3.33078 3.44991 3.91941 3.99969 4.11129 4.25791 4.28710 4.37104 4.41700 4.43302 4.58604 4.83644 4.85162 4.87031 5.02452 5.05675 5.18424 5.19285 5.27185 5.29265 5.35686 5.38389 5.55359 5.67783 5.74251 5.74926 5.81327 5.85225 5.97460 5.97789 6.10252 6.16394 6.24508 6.31746 6.98683 7.28440 7.39658 7.55869 7.64768 7.68833 8.07235 8.62132 9.18617 9.55294 10.06745 10.76778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.001502 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.140963 B =18634.175825 C =18914.275405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.318 3.682 3 N -0.506 5.506 4 C 0.155 3.845 5 C -0.178 4.178 6 C 0.137 3.863 7 C 0.568 3.432 8 O -0.523 6.523 9 N -0.702 5.702 10 C 0.134 3.866 11 C -0.127 4.127 12 H 0.085 0.915 13 C -0.165 4.165 14 C 0.066 3.934 15 H 0.095 0.905 16 N -0.657 5.657 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.115 4.115 30 N -0.497 5.497 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.071 0.929 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 26.683 16.298 31.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.221 5.221 4 C -0.012 4.012 5 C -0.201 4.201 6 C -0.011 4.011 7 C 0.351 3.649 8 O -0.398 6.398 9 N -0.353 5.353 10 C 0.011 3.989 11 C -0.147 4.147 12 H 0.104 0.896 13 C -0.205 4.205 14 C -0.045 4.045 15 H 0.113 0.887 16 N -0.288 5.288 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.153 4.153 30 N -0.215 5.215 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.196 0.804 35 H 0.180 0.820 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.172 0.828 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.337 25.670 16.829 31.155 hybrid contribution 0.214 0.284 -1.388 1.433 sum -5.122 25.954 15.442 30.631 Atomic orbital electron populations 1.20632 0.84995 1.04575 1.04349 1.23301 0.98414 0.82882 0.90335 1.68240 1.10514 1.30400 1.12946 1.23409 0.89384 0.98778 0.89635 1.22994 1.04034 0.92957 1.00089 1.21643 0.89903 0.94773 0.94828 1.17783 0.86565 0.82988 0.77578 1.90828 1.12620 1.86881 1.49432 1.45851 1.11401 1.05197 1.72865 1.21335 0.94248 0.80208 1.03069 1.22438 0.98617 0.94823 0.98782 0.89622 1.23801 0.99959 1.00400 0.96311 1.23114 0.97627 0.88277 0.95467 0.88651 1.60018 1.16970 1.29091 1.22710 1.21718 1.00239 0.96390 0.89961 1.19844 0.85610 0.88840 0.83126 1.90517 1.41415 1.53708 1.61202 1.41871 1.45038 1.17362 1.15793 1.19710 1.29016 0.93448 1.00756 0.87919 1.25266 0.96551 0.99654 0.96501 1.69616 1.33852 1.36482 1.14381 0.85851 0.77889 0.81631 0.78873 1.20448 1.20925 1.19396 1.23061 1.01353 0.94316 0.96619 1.68179 1.08654 1.31318 1.13299 0.89203 0.89257 0.89289 0.80409 0.82030 0.75102 0.90588 0.90541 0.89389 0.91473 0.82831 0.93887 0.89639 0.77463 0.91885 0.91015 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.31 36.00 0.37 -0.03 16 2 C 0.32 2.47 7.64 -157.31 -1.20 1.27 16 3 N -0.51 -3.96 10.32 -10.74 -0.11 -4.07 16 4 C 0.16 0.94 11.31 -17.20 -0.19 0.75 16 5 C -0.18 -1.29 9.72 -38.91 -0.38 -1.67 16 6 C 0.14 1.24 6.79 -82.63 -0.56 0.68 16 7 C 0.57 5.85 7.83 -12.05 -0.09 5.75 16 8 O -0.52 -6.79 16.43 5.38 0.09 -6.70 16 9 N -0.70 -6.00 5.55 -61.06 -0.34 -6.34 16 10 C 0.13 1.15 5.35 -4.04 -0.02 1.13 16 11 C -0.13 -1.02 3.94 -89.81 -0.35 -1.38 16 12 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 13 C -0.17 -1.57 7.23 -25.92 -0.19 -1.76 16 14 C 0.07 0.77 3.83 -66.90 -0.26 0.51 16 15 H 0.10 1.09 7.44 -51.93 -0.39 0.70 16 16 N -0.66 -10.38 6.24 -107.13 -0.67 -11.05 16 17 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 18 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 19 O -0.58 -15.95 15.78 5.55 0.09 -15.87 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.11 -1.13 7.47 -25.92 -0.19 -1.32 16 30 N -0.50 -4.27 9.60 -7.32 -0.07 -4.34 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.18 0.43 8.06 -52.48 -0.42 0.00 16 35 H 0.16 0.98 7.74 -52.49 -0.41 0.57 16 36 H 0.41 3.02 7.86 -40.82 -0.32 2.70 16 37 H 0.08 0.73 7.39 -51.93 -0.38 0.35 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.84 7.82 -51.93 -0.41 0.44 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.35 5.70 7.90 -39.29 -0.31 5.39 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -34.40 402.45 -9.42 -43.82 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.69 Total: 13.72 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -3.43 Total: 7.09 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.52 Total: -64.27 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.18 Total: -22.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.40 -9.42 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688950741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.859 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds