Wall clock time and date at job start Wed Apr 1 2020 04:16:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.31912 * 119.03988 * 2 1
4 4 C 1.32172 * 121.03418 * 179.97438 * 3 2 1
5 5 C 1.38801 * 119.14839 * 359.97438 * 4 3 2
6 6 C 1.39495 * 118.26058 * 0.02562 * 5 4 3
7 7 C 1.48461 * 120.55113 * 179.72360 * 6 5 4
8 8 O 1.21479 * 119.99695 * 0.02562 * 7 6 5
9 9 N 1.34773 * 120.00438 * 179.97438 * 7 6 5
10 10 C 1.46498 * 120.00186 * 180.02562 * 9 7 6
11 11 C 1.52998 * 109.47075 * 180.02562 * 10 9 7
12 12 H 1.09008 * 112.84993 * 316.19493 * 11 10 9
13 13 C 1.53780 * 113.61976 * 87.50070 * 11 10 9
14 14 C 1.53780 * 87.08149 * 89.11620 * 13 11 10
15 15 H 1.08999 * 113.61429 * 270.89021 * 14 13 11
16 16 N 1.46898 * 113.61487 * 139.98198 * 14 13 11
17 17 C 1.46897 * 110.99791 * 107.50290 * 16 14 13
18 18 C 1.50704 * 109.47156 * 179.97438 * 17 16 14
19 19 O 1.21288 * 119.99709 * 0.02562 * 18 17 16
20 20 N 1.34775 * 120.00058 * 180.02562 * 18 17 16
21 21 C 1.37098 * 119.99869 * 180.02562 * 20 18 17
22 22 H 1.08001 * 120.00160 * 359.97438 * 21 20 18
23 23 C 1.38947 * 120.00111 * 180.02562 * 21 20 18
24 24 N 1.31417 * 119.99880 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00366 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47524 * 89.99445 * 25 23 21
27 27 H 1.48500 * 109.47144 * 209.99734 * 25 23 21
28 28 H 1.48510 * 109.46798 * 329.99353 * 25 23 21
29 29 C 1.53780 * 87.08146 * 25.43326 * 14 13 11
30 30 N 1.31546 * 119.04157 * 179.97438 * 2 1 3
31 31 H 1.08998 * 109.47375 * 89.99822 * 1 2 3
32 32 H 1.08997 * 109.47057 * 209.99916 * 1 2 3
33 33 H 1.09007 * 109.47385 * 329.99592 * 1 2 3
34 34 H 1.08004 * 120.42722 * 180.02562 * 4 3 2
35 35 H 1.07999 * 120.87455 * 180.02562 * 5 4 3
36 36 H 0.97006 * 119.99264 * 0.02562 * 9 7 6
37 37 H 1.08999 * 109.46824 * 300.00240 * 10 9 7
38 38 H 1.08993 * 109.46978 * 60.00537 * 10 9 7
39 39 H 1.09000 * 113.61352 * 203.66778 * 13 11 10
40 40 H 1.09001 * 113.61403 * 334.56807 * 13 11 10
41 41 H 1.00904 * 110.99914 * 343.54962 * 16 14 13
42 42 H 1.08995 * 109.47585 * 299.99969 * 17 16 14
43 43 H 1.09005 * 109.47231 * 60.00092 * 17 16 14
44 44 H 0.96995 * 120.00243 * 0.02562 * 20 18 17
45 45 H 0.97002 * 120.00088 * 180.02562 * 24 23 21
46 46 H 1.08998 * 113.61961 * 220.01670 * 29 14 13
47 47 H 1.09006 * 113.61623 * 89.11447 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1473 1.1533 0.0000
4 6 3.4682 1.1993 0.0005
5 6 4.1861 0.0113 0.0016
6 6 3.4760 -1.1894 0.0015
7 6 4.1924 -2.4897 -0.0035
8 8 5.4070 -2.5140 -0.0072
9 7 3.4954 -3.6432 -0.0030
10 6 4.2024 -4.9263 -0.0074
11 6 3.1851 -6.0691 -0.0064
12 1 2.3642 -5.9045 0.6917
13 6 2.7254 -6.4860 -1.4134
14 6 3.9086 -7.4682 -1.4235
15 1 4.8311 -7.0365 -1.8116
16 7 3.5883 -8.7691 -2.0258
17 6 4.2248 -8.9108 -3.3421
18 6 3.8748 -10.2547 -3.9273
19 8 3.1647 -11.0191 -3.3089
20 7 4.3510 -10.6072 -5.1379
21 6 4.0322 -11.8297 -5.6705
22 1 3.3998 -12.5103 -5.1198
23 6 4.5235 -12.1934 -6.9182
24 7 5.2933 -11.3653 -7.5881
25 14 4.0886 -13.8586 -7.6443
26 1 2.8434 -13.7398 -8.4447
27 1 5.1963 -14.3223 -8.5179
28 1 3.8803 -14.8377 -6.5472
29 6 3.8243 -7.4628 0.1120
30 7 2.1456 -1.1501 0.0005
31 1 -0.3634 0.0000 -1.0276
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3634 0.8900 0.5139
34 1 3.9825 2.1490 0.0009
35 1 5.2660 0.0164 0.0024
36 1 2.5256 -3.6238 0.0003
37 1 4.8248 -4.9951 -0.8995
38 1 4.8306 -4.9980 0.8804
39 1 1.7515 -6.9753 -1.4274
40 1 2.8114 -5.6911 -2.1542
41 1 2.5901 -8.9017 -2.0906
42 1 3.8688 -8.1218 -4.0046
43 1 5.3065 -8.8330 -3.2329
44 1 4.9192 -9.9961 -5.6323
45 1 5.6360 -11.6191 -8.4594
46 1 4.7976 -7.4565 0.6028
47 1 3.1509 -8.2192 0.5151
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001688950741.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:58
Heat of formation + Delta-G solvation = -28.490314 kcal
Electronic energy + Delta-G solvation = -28442.302113 eV
Core-core repulsion = 24238.679557 eV
Total energy + Delta-G solvation = -4203.622556 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.36366 -41.01403 -40.28111 -39.73097 -36.29812 -35.88181 -35.07055 -34.31711
-34.27636 -33.24249 -29.49378 -29.45511 -27.98597 -26.59851 -26.39083 -25.59222
-24.05605 -23.37686 -21.96887 -21.19614 -20.27897 -19.88050 -19.13825 -18.55041
-17.86430 -17.18921 -16.91971 -16.87612 -16.63065 -16.40446 -16.30674 -16.04357
-15.92562 -15.63188 -15.56710 -14.88317 -14.58345 -14.51067 -14.38760 -14.21350
-13.67280 -13.52159 -13.48666 -13.25838 -13.23980 -13.06604 -12.86924 -12.68356
-12.43125 -12.15963 -12.09327 -12.06959 -11.98637 -11.65159 -11.51666 -11.36928
-11.21719 -10.63090 -10.47207 -10.33560 -10.21624 -10.02571 -9.22068 -8.47398
-5.96508 -0.66758 -0.17211 1.37730 1.41487 1.54582 1.55323 1.79633
2.04224 2.28943 2.66262 2.67933 2.96385 2.99714 3.19711 3.43256
3.51847 3.54622 3.67447 3.70221 3.81740 3.97140 4.02952 4.27538
4.32397 4.37116 4.42473 4.46453 4.50965 4.61060 4.65883 4.72286
4.77118 4.83291 4.90020 4.99617 5.00221 5.09690 5.19590 5.27304
5.32067 5.38518 5.40553 5.69311 5.93117 6.17108 6.29311 6.45210
6.59190 6.83565 6.94361 7.11540 7.55179 8.10293 8.69967
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018247 B = 0.001502 C = 0.001480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.140963 B =18634.175825 C =18914.275405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.305 3.695
3 N -0.520 5.520
4 C 0.162 3.838
5 C -0.181 4.181
6 C 0.116 3.884
7 C 0.566 3.434
8 O -0.557 6.557
9 N -0.692 5.692
10 C 0.136 3.864
11 C -0.106 4.106
12 H 0.104 0.896
13 C -0.157 4.157
14 C 0.056 3.944
15 H 0.099 0.901
16 N -0.671 5.671
17 C 0.065 3.935
18 C 0.437 3.563
19 O -0.623 6.623
20 N -0.574 5.574
21 C -0.336 4.336
22 H 0.079 0.921
23 C -0.014 4.014
24 N -0.921 5.921
25 Si 0.995 3.005
26 H -0.270 1.270
27 H -0.271 1.271
28 H -0.273 1.273
29 C -0.112 4.112
30 N -0.506 5.506
31 H 0.098 0.902
32 H 0.096 0.904
33 H 0.098 0.902
34 H 0.215 0.785
35 H 0.170 0.830
36 H 0.420 0.580
37 H 0.067 0.933
38 H 0.077 0.923
39 H 0.089 0.911
40 H 0.068 0.932
41 H 0.346 0.654
42 H 0.064 0.936
43 H 0.100 0.900
44 H 0.396 0.604
45 H 0.278 0.722
46 H 0.076 0.924
47 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.788 28.132 16.540 33.143
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.038 3.962
3 N -0.235 5.235
4 C -0.005 4.005
5 C -0.203 4.203
6 C -0.031 4.031
7 C 0.350 3.650
8 O -0.434 6.434
9 N -0.343 5.343
10 C 0.013 3.987
11 C -0.125 4.125
12 H 0.122 0.878
13 C -0.197 4.197
14 C -0.054 4.054
15 H 0.117 0.883
16 N -0.302 5.302
17 C -0.068 4.068
18 C 0.224 3.776
19 O -0.510 6.510
20 N -0.211 5.211
21 C -0.465 4.465
22 H 0.097 0.903
23 C -0.213 4.213
24 N -0.562 5.562
25 Si 0.818 3.182
26 H -0.195 1.195
27 H -0.195 1.195
28 H -0.198 1.198
29 C -0.151 4.151
30 N -0.224 5.224
31 H 0.116 0.884
32 H 0.115 0.885
33 H 0.116 0.884
34 H 0.232 0.768
35 H 0.188 0.812
36 H 0.257 0.743
37 H 0.085 0.915
38 H 0.095 0.905
39 H 0.108 0.892
40 H 0.087 0.913
41 H 0.166 0.834
42 H 0.082 0.918
43 H 0.119 0.881
44 H 0.230 0.770
45 H 0.087 0.913
46 H 0.095 0.905
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.779 27.143 17.075 32.584
hybrid contribution 0.347 -0.100 -1.419 1.464
sum -5.432 27.043 15.656 31.717
Atomic orbital electron populations
1.20736 0.83125 1.05401 1.05087 1.23888 0.99678 0.82715 0.89885
1.68336 1.11324 1.30425 1.13394 1.24018 0.88940 0.99779 0.87809
1.23187 1.04554 0.92855 0.99747 1.21602 0.90446 0.94711 0.96310
1.18014 0.86270 0.83756 0.76966 1.90801 1.13955 1.87422 1.51238
1.45803 1.11719 1.04858 1.71941 1.21294 0.94308 0.80366 1.02692
1.22255 0.98538 0.93534 0.98173 0.87800 1.23721 0.99059 0.99655
0.97227 1.23326 0.98765 0.86991 0.96362 0.88264 1.60055 1.16562
1.32019 1.21567 1.21570 1.01273 0.92827 0.91109 1.20919 0.83953
0.90534 0.82145 1.90482 1.42880 1.55613 1.62013 1.41948 1.45580
1.16934 1.16613 1.19689 1.30379 0.94640 1.01803 0.90265 1.26064
0.95955 1.03081 0.96219 1.69678 1.33908 1.37856 1.14721 0.84906
0.78183 0.77145 0.77965 1.19545 1.19548 1.19768 1.23027 1.01789
0.95212 0.95057 1.68173 1.08417 1.31868 1.13958 0.88377 0.88523
0.88355 0.76824 0.81237 0.74264 0.91518 0.90470 0.89230 0.91304
0.83387 0.91800 0.88146 0.77019 0.91293 0.90494 0.89315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.66 10.31 71.24 0.73 0.08 16
2 C 0.31 4.37 7.64 138.79 1.06 5.43 16
3 N -0.52 -7.31 10.32 -187.88 -1.94 -9.25 16
4 C 0.16 1.67 11.31 84.78 0.96 2.63 16
5 C -0.18 -2.43 9.72 22.71 0.22 -2.21 16
6 C 0.12 2.04 6.79 41.98 0.29 2.32 16
7 C 0.57 11.43 7.83 86.97 0.68 12.11 16
8 O -0.56 -14.45 16.43 -3.65 -0.06 -14.51 16
9 N -0.69 -11.14 5.55 -465.40 -2.58 -13.72 16
10 C 0.14 2.17 5.35 86.38 0.46 2.63 16
11 C -0.11 -1.50 3.94 -10.27 -0.04 -1.54 16
12 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16
13 C -0.16 -2.73 7.23 31.12 0.22 -2.50 16
14 C 0.06 1.22 3.83 45.44 0.17 1.39 16
15 H 0.10 2.12 7.44 -2.39 -0.02 2.10 16
16 N -0.67 -20.77 6.24 -492.86 -3.08 -23.85 16
17 C 0.06 2.24 6.01 85.56 0.51 2.75 16
18 C 0.44 21.06 7.82 87.66 0.69 21.75 16
19 O -0.62 -34.88 15.78 -3.05 -0.05 -34.93 16
20 N -0.57 -29.86 5.29 -306.99 -1.62 -31.49 16
21 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16
22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16
23 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16
24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16
25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16
26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
28 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
29 C -0.11 -2.03 7.47 31.12 0.23 -1.80 16
30 N -0.51 -8.25 9.60 -177.09 -1.70 -9.95 16
31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
33 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16
34 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16
35 H 0.17 1.92 7.74 -2.91 -0.02 1.90 16
36 H 0.42 5.55 7.86 -92.70 -0.73 4.82 16
37 H 0.07 1.22 7.39 -2.39 -0.02 1.20 16
38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
39 H 0.09 1.57 7.82 -2.39 -0.02 1.55 16
40 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16
41 H 0.35 11.17 7.90 -89.69 -0.71 10.46 16
42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
43 H 0.10 3.20 8.13 -2.38 -0.02 3.18 16
44 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16
45 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16
46 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16
47 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16
Total: -1.00 -75.03 402.45 -2.38 -77.41
By element:
Atomic # 1 Polarization: 41.74 SS G_CDS: -1.13 Total: 40.60 kcal
Atomic # 6 Polarization: 16.83 SS G_CDS: 7.47 Total: 24.30 kcal
Atomic # 7 Polarization: -127.48 SS G_CDS: -10.64 Total: -138.12 kcal
Atomic # 8 Polarization: -49.33 SS G_CDS: -0.11 Total: -49.44 kcal
Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal
Total: -75.03 -2.38 -77.41 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001688950741.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.917 kcal
(2) G-P(sol) polarization free energy of solvation -75.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds