Wall clock time and date at job start Wed Apr 1 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31912 * 119.03988 * 2 1 4 4 C 1.32172 * 121.03418 * 179.97438 * 3 2 1 5 5 C 1.38801 * 119.14839 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.26058 * 0.02562 * 5 4 3 7 7 C 1.48461 * 120.55113 * 179.72360 * 6 5 4 8 8 O 1.21479 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00438 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00186 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47075 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.84993 * 316.19493 * 11 10 9 13 13 C 1.53780 * 113.61976 * 87.50070 * 11 10 9 14 14 C 1.53780 * 87.08149 * 89.11620 * 13 11 10 15 15 H 1.08999 * 113.61429 * 270.89021 * 14 13 11 16 16 N 1.46898 * 113.61487 * 139.98198 * 14 13 11 17 17 C 1.46897 * 110.99791 * 107.50290 * 16 14 13 18 18 C 1.50704 * 109.47156 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99709 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00058 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99869 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00111 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00366 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47524 * 89.99445 * 25 23 21 27 27 H 1.48500 * 109.47144 * 209.99734 * 25 23 21 28 28 H 1.48510 * 109.46798 * 329.99353 * 25 23 21 29 29 C 1.53780 * 87.08146 * 25.43326 * 14 13 11 30 30 N 1.31546 * 119.04157 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47375 * 89.99822 * 1 2 3 32 32 H 1.08997 * 109.47057 * 209.99916 * 1 2 3 33 33 H 1.09007 * 109.47385 * 329.99592 * 1 2 3 34 34 H 1.08004 * 120.42722 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.87455 * 180.02562 * 5 4 3 36 36 H 0.97006 * 119.99264 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.46824 * 300.00240 * 10 9 7 38 38 H 1.08993 * 109.46978 * 60.00537 * 10 9 7 39 39 H 1.09000 * 113.61352 * 203.66778 * 13 11 10 40 40 H 1.09001 * 113.61403 * 334.56807 * 13 11 10 41 41 H 1.00904 * 110.99914 * 343.54962 * 16 14 13 42 42 H 1.08995 * 109.47585 * 299.99969 * 17 16 14 43 43 H 1.09005 * 109.47231 * 60.00092 * 17 16 14 44 44 H 0.96995 * 120.00243 * 0.02562 * 20 18 17 45 45 H 0.97002 * 120.00088 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.61961 * 220.01670 * 29 14 13 47 47 H 1.09006 * 113.61623 * 89.11447 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 0.0005 5 6 4.1861 0.0113 0.0016 6 6 3.4760 -1.1894 0.0015 7 6 4.1924 -2.4897 -0.0035 8 8 5.4070 -2.5140 -0.0072 9 7 3.4954 -3.6432 -0.0030 10 6 4.2024 -4.9263 -0.0074 11 6 3.1851 -6.0691 -0.0064 12 1 2.3642 -5.9045 0.6917 13 6 2.7254 -6.4860 -1.4134 14 6 3.9086 -7.4682 -1.4235 15 1 4.8311 -7.0365 -1.8116 16 7 3.5883 -8.7691 -2.0258 17 6 4.2248 -8.9108 -3.3421 18 6 3.8748 -10.2547 -3.9273 19 8 3.1647 -11.0191 -3.3089 20 7 4.3510 -10.6072 -5.1379 21 6 4.0322 -11.8297 -5.6705 22 1 3.3998 -12.5103 -5.1198 23 6 4.5235 -12.1934 -6.9182 24 7 5.2933 -11.3653 -7.5881 25 14 4.0886 -13.8586 -7.6443 26 1 2.8434 -13.7398 -8.4447 27 1 5.1963 -14.3223 -8.5179 28 1 3.8803 -14.8377 -6.5472 29 6 3.8243 -7.4628 0.1120 30 7 2.1456 -1.1501 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 3.9825 2.1490 0.0009 35 1 5.2660 0.0164 0.0024 36 1 2.5256 -3.6238 0.0003 37 1 4.8248 -4.9951 -0.8995 38 1 4.8306 -4.9980 0.8804 39 1 1.7515 -6.9753 -1.4274 40 1 2.8114 -5.6911 -2.1542 41 1 2.5901 -8.9017 -2.0906 42 1 3.8688 -8.1218 -4.0046 43 1 5.3065 -8.8330 -3.2329 44 1 4.9192 -9.9961 -5.6323 45 1 5.6360 -11.6191 -8.4594 46 1 4.7976 -7.4565 0.6028 47 1 3.1509 -8.2192 0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688950741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:58 Heat of formation + Delta-G solvation = -28.490314 kcal Electronic energy + Delta-G solvation = -28442.302113 eV Core-core repulsion = 24238.679557 eV Total energy + Delta-G solvation = -4203.622556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.36366 -41.01403 -40.28111 -39.73097 -36.29812 -35.88181 -35.07055 -34.31711 -34.27636 -33.24249 -29.49378 -29.45511 -27.98597 -26.59851 -26.39083 -25.59222 -24.05605 -23.37686 -21.96887 -21.19614 -20.27897 -19.88050 -19.13825 -18.55041 -17.86430 -17.18921 -16.91971 -16.87612 -16.63065 -16.40446 -16.30674 -16.04357 -15.92562 -15.63188 -15.56710 -14.88317 -14.58345 -14.51067 -14.38760 -14.21350 -13.67280 -13.52159 -13.48666 -13.25838 -13.23980 -13.06604 -12.86924 -12.68356 -12.43125 -12.15963 -12.09327 -12.06959 -11.98637 -11.65159 -11.51666 -11.36928 -11.21719 -10.63090 -10.47207 -10.33560 -10.21624 -10.02571 -9.22068 -8.47398 -5.96508 -0.66758 -0.17211 1.37730 1.41487 1.54582 1.55323 1.79633 2.04224 2.28943 2.66262 2.67933 2.96385 2.99714 3.19711 3.43256 3.51847 3.54622 3.67447 3.70221 3.81740 3.97140 4.02952 4.27538 4.32397 4.37116 4.42473 4.46453 4.50965 4.61060 4.65883 4.72286 4.77118 4.83291 4.90020 4.99617 5.00221 5.09690 5.19590 5.27304 5.32067 5.38518 5.40553 5.69311 5.93117 6.17108 6.29311 6.45210 6.59190 6.83565 6.94361 7.11540 7.55179 8.10293 8.69967 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.001502 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.140963 B =18634.175825 C =18914.275405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.305 3.695 3 N -0.520 5.520 4 C 0.162 3.838 5 C -0.181 4.181 6 C 0.116 3.884 7 C 0.566 3.434 8 O -0.557 6.557 9 N -0.692 5.692 10 C 0.136 3.864 11 C -0.106 4.106 12 H 0.104 0.896 13 C -0.157 4.157 14 C 0.056 3.944 15 H 0.099 0.901 16 N -0.671 5.671 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.273 1.273 29 C -0.112 4.112 30 N -0.506 5.506 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.215 0.785 35 H 0.170 0.830 36 H 0.420 0.580 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.346 0.654 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.076 0.924 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 28.132 16.540 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.235 5.235 4 C -0.005 4.005 5 C -0.203 4.203 6 C -0.031 4.031 7 C 0.350 3.650 8 O -0.434 6.434 9 N -0.343 5.343 10 C 0.013 3.987 11 C -0.125 4.125 12 H 0.122 0.878 13 C -0.197 4.197 14 C -0.054 4.054 15 H 0.117 0.883 16 N -0.302 5.302 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.151 4.151 30 N -0.224 5.224 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.188 0.812 36 H 0.257 0.743 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.166 0.834 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.779 27.143 17.075 32.584 hybrid contribution 0.347 -0.100 -1.419 1.464 sum -5.432 27.043 15.656 31.717 Atomic orbital electron populations 1.20736 0.83125 1.05401 1.05087 1.23888 0.99678 0.82715 0.89885 1.68336 1.11324 1.30425 1.13394 1.24018 0.88940 0.99779 0.87809 1.23187 1.04554 0.92855 0.99747 1.21602 0.90446 0.94711 0.96310 1.18014 0.86270 0.83756 0.76966 1.90801 1.13955 1.87422 1.51238 1.45803 1.11719 1.04858 1.71941 1.21294 0.94308 0.80366 1.02692 1.22255 0.98538 0.93534 0.98173 0.87800 1.23721 0.99059 0.99655 0.97227 1.23326 0.98765 0.86991 0.96362 0.88264 1.60055 1.16562 1.32019 1.21567 1.21570 1.01273 0.92827 0.91109 1.20919 0.83953 0.90534 0.82145 1.90482 1.42880 1.55613 1.62013 1.41948 1.45580 1.16934 1.16613 1.19689 1.30379 0.94640 1.01803 0.90265 1.26064 0.95955 1.03081 0.96219 1.69678 1.33908 1.37856 1.14721 0.84906 0.78183 0.77145 0.77965 1.19545 1.19548 1.19768 1.23027 1.01789 0.95212 0.95057 1.68173 1.08417 1.31868 1.13958 0.88377 0.88523 0.88355 0.76824 0.81237 0.74264 0.91518 0.90470 0.89230 0.91304 0.83387 0.91800 0.88146 0.77019 0.91293 0.90494 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.31 71.24 0.73 0.08 16 2 C 0.31 4.37 7.64 138.79 1.06 5.43 16 3 N -0.52 -7.31 10.32 -187.88 -1.94 -9.25 16 4 C 0.16 1.67 11.31 84.78 0.96 2.63 16 5 C -0.18 -2.43 9.72 22.71 0.22 -2.21 16 6 C 0.12 2.04 6.79 41.98 0.29 2.32 16 7 C 0.57 11.43 7.83 86.97 0.68 12.11 16 8 O -0.56 -14.45 16.43 -3.65 -0.06 -14.51 16 9 N -0.69 -11.14 5.55 -465.40 -2.58 -13.72 16 10 C 0.14 2.17 5.35 86.38 0.46 2.63 16 11 C -0.11 -1.50 3.94 -10.27 -0.04 -1.54 16 12 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 13 C -0.16 -2.73 7.23 31.12 0.22 -2.50 16 14 C 0.06 1.22 3.83 45.44 0.17 1.39 16 15 H 0.10 2.12 7.44 -2.39 -0.02 2.10 16 16 N -0.67 -20.77 6.24 -492.86 -3.08 -23.85 16 17 C 0.06 2.24 6.01 85.56 0.51 2.75 16 18 C 0.44 21.06 7.82 87.66 0.69 21.75 16 19 O -0.62 -34.88 15.78 -3.05 -0.05 -34.93 16 20 N -0.57 -29.86 5.29 -306.99 -1.62 -31.49 16 21 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 29 C -0.11 -2.03 7.47 31.12 0.23 -1.80 16 30 N -0.51 -8.25 9.60 -177.09 -1.70 -9.95 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.17 1.92 7.74 -2.91 -0.02 1.90 16 36 H 0.42 5.55 7.86 -92.70 -0.73 4.82 16 37 H 0.07 1.22 7.39 -2.39 -0.02 1.20 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.57 7.82 -2.39 -0.02 1.55 16 40 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.35 11.17 7.90 -89.69 -0.71 10.46 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 3.20 8.13 -2.38 -0.02 3.18 16 44 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 45 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 47 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -75.03 402.45 -2.38 -77.41 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.13 Total: 40.60 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 7.47 Total: 24.30 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -10.64 Total: -138.12 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.11 Total: -49.44 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -75.03 -2.38 -77.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688950741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.917 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds