Wall clock time and date at job start Wed Apr 1 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31922 * 120.16706 * 2 1 4 4 N 1.28287 * 122.32224 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.51344 * 359.97438 * 4 3 2 6 6 C 1.38509 * 119.97234 * 359.72375 * 5 4 3 7 7 C 1.39721 * 120.17201 * 179.97438 * 2 1 3 8 8 C 1.48134 * 121.14547 * 0.02562 * 7 2 1 9 9 O 1.21518 * 120.00178 * 354.18249 * 8 7 2 10 10 N 1.34783 * 120.00012 * 174.18350 * 8 7 2 11 11 C 1.46498 * 120.00021 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47025 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.85475 * 316.20128 * 12 11 10 14 14 C 1.53782 * 113.68693 * 87.46584 * 12 11 10 15 15 C 1.53784 * 87.08029 * 139.99026 * 14 12 11 16 16 H 1.09003 * 113.68719 * 89.12837 * 15 14 12 17 17 N 1.46894 * 113.61759 * 220.02084 * 15 14 12 18 18 C 1.46911 * 110.99865 * 252.49616 * 17 15 14 19 19 C 1.50698 * 109.46725 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00662 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99612 * 180.02562 * 19 18 17 22 22 C 1.37093 * 119.99689 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00356 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99737 * 180.27308 * 22 21 19 25 25 N 1.31413 * 119.99930 * 359.72423 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 179.72466 * 24 22 21 27 27 H 1.48500 * 109.47071 * 90.00301 * 26 24 22 28 28 H 1.48508 * 109.46694 * 209.99938 * 26 24 22 29 29 H 1.48497 * 109.47258 * 329.99893 * 26 24 22 30 30 C 1.53778 * 113.61377 * 185.00378 * 12 11 10 31 31 H 1.08998 * 109.47548 * 263.67392 * 1 2 3 32 32 H 1.09003 * 109.47268 * 23.67626 * 1 2 3 33 33 H 1.09003 * 109.47196 * 143.67773 * 1 2 3 34 34 H 1.08002 * 120.01229 * 180.02562 * 5 4 3 35 35 H 1.07993 * 121.08907 * 180.28107 * 6 5 4 36 36 H 0.96999 * 119.99647 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46699 * 60.00568 * 11 10 8 38 38 H 1.08991 * 109.47422 * 300.00224 * 11 10 8 39 39 H 1.09000 * 113.61496 * 25.45015 * 14 12 11 40 40 H 1.08994 * 113.61509 * 254.53777 * 14 12 11 41 41 H 1.00899 * 111.00142 * 128.55029 * 17 15 14 42 42 H 1.09000 * 109.46756 * 59.99838 * 18 17 15 43 43 H 1.08992 * 109.47055 * 300.00260 * 18 17 15 44 44 H 0.96996 * 119.99673 * 359.97438 * 21 19 18 45 45 H 0.96999 * 120.00008 * 179.97438 * 25 24 22 46 46 H 1.08997 * 113.61992 * 105.39151 * 30 12 11 47 47 H 1.08998 * 113.61574 * 334.48273 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1699 1.1405 0.0000 4 7 3.4519 1.1888 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1478 0.0079 7 6 2.2092 -1.2079 0.0005 8 6 1.4983 -2.5075 0.0006 9 8 0.2881 -2.5380 0.1068 10 7 2.1936 -3.6561 -0.1172 11 6 1.4905 -4.9413 -0.1166 12 6 2.5047 -6.0775 -0.2629 13 1 3.2622 -5.8739 -1.0199 14 6 3.0862 -6.5628 1.0755 15 6 2.9836 -7.9902 0.5125 16 1 3.8714 -8.3108 -0.0325 17 7 2.5308 -8.9805 1.4984 18 6 3.6358 -9.8567 1.9101 19 6 3.1344 -10.8566 2.9199 20 8 1.9710 -10.8413 3.2627 21 7 3.9788 -11.7681 3.4423 22 6 3.5226 -12.6780 4.3606 23 1 2.4867 -12.6643 4.6658 24 6 4.3945 -13.6141 4.9034 25 7 5.6550 -13.6305 4.5324 26 14 3.7746 -14.8491 6.1604 27 1 3.2951 -16.0684 5.4615 28 1 4.8788 -15.2105 7.0853 29 1 2.6573 -14.2500 6.9336 30 6 1.8587 -7.4666 -0.3961 31 1 -0.3634 -0.1132 1.0214 32 1 -0.3634 0.9412 -0.4127 33 1 -0.3634 -0.8280 -0.6087 34 1 5.2787 0.1915 0.0023 35 1 4.2059 -2.0477 0.0134 36 1 3.1596 -3.6317 -0.2016 37 1 0.7887 -4.9718 -0.9501 38 1 0.9468 -5.0576 0.8208 39 1 2.4310 -6.3814 1.9275 40 1 4.1109 -6.2352 1.2508 41 1 1.7564 -9.5192 1.1405 42 1 4.4286 -9.2564 2.3564 43 1 4.0255 -10.3835 1.0392 44 1 4.9091 -11.7806 3.1679 45 1 6.2637 -14.2836 4.9116 46 1 1.8924 -7.8687 -1.4086 47 1 0.8680 -7.5323 0.0537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691103585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:56 Heat of formation + Delta-G solvation = 9.426395 kcal Electronic energy + Delta-G solvation = -28448.876198 eV Core-core repulsion = 24246.897833 eV Total energy + Delta-G solvation = -4201.978364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83912 -40.17613 -39.28534 -38.09480 -35.55610 -34.25912 -34.21270 -33.79383 -33.13432 -31.23417 -29.25217 -28.17408 -26.61640 -25.96173 -25.59955 -24.08527 -23.53062 -21.81158 -21.52303 -19.87982 -19.18022 -18.56113 -18.20342 -17.90410 -16.47516 -16.30921 -16.28539 -16.16027 -15.86973 -15.44963 -15.21542 -15.15269 -14.57600 -14.40932 -14.23512 -13.92959 -13.82246 -13.71769 -13.43891 -13.21936 -12.68446 -12.63912 -12.53232 -12.33846 -11.71062 -11.60272 -11.56609 -11.52967 -11.10079 -11.05538 -10.91488 -10.85786 -10.74950 -10.47850 -10.41508 -10.29329 -10.24082 -9.96665 -9.56113 -9.53744 -8.48597 -8.12230 -7.98989 -6.44631 -3.85456 -0.25820 0.29663 2.23087 2.43879 3.04348 3.15723 3.24613 3.30712 3.46085 3.73588 3.76616 3.87661 4.00666 4.04107 4.12722 4.24649 4.26894 4.44030 4.63329 4.64346 4.69851 4.82873 4.88002 5.01829 5.13318 5.16636 5.23027 5.29276 5.34206 5.39912 5.48350 5.56344 5.57488 5.66792 5.72339 5.77064 5.84027 5.89371 5.94970 6.07632 6.15897 6.30208 6.84130 7.22875 7.52522 7.55228 7.61281 8.03473 8.11419 8.58247 9.15084 9.51260 10.02672 10.73057 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.001435 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.711969 B =19502.982344 C =19828.306369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.125 3.875 3 N -0.245 5.245 4 N -0.222 5.222 5 C 0.028 3.972 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.560 3.440 9 O -0.515 6.515 10 N -0.716 5.716 11 C 0.131 3.869 12 C -0.127 4.127 13 H 0.094 0.906 14 C -0.122 4.122 15 C 0.059 3.941 16 H 0.071 0.929 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 C -0.131 4.131 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.351 0.649 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.070 0.930 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 23.407 -14.727 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.019 4.019 3 N -0.088 5.088 4 N -0.063 5.063 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.149 4.149 8 C 0.345 3.655 9 O -0.391 6.391 10 N -0.368 5.368 11 C 0.008 3.992 12 C -0.146 4.146 13 H 0.113 0.887 14 C -0.160 4.160 15 C -0.051 4.051 16 H 0.089 0.911 17 N -0.289 5.289 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.169 4.169 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.197 0.803 35 H 0.173 0.827 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.871 25.299 -13.807 28.882 hybrid contribution 1.441 -2.878 -0.314 3.234 sum -0.430 22.421 -14.120 26.500 Atomic orbital electron populations 1.21011 0.86107 1.04593 1.04847 1.23208 0.99830 0.88509 0.90337 1.73137 1.01466 1.24030 1.10197 1.72902 0.99694 1.27874 1.05869 1.24338 1.02934 0.89171 0.97153 1.22697 0.94013 1.00562 0.93735 1.21105 0.94536 0.95737 1.03532 1.17867 0.87023 0.83168 0.77430 1.90786 1.13116 1.86797 1.48438 1.45912 1.10954 1.05975 1.73964 1.21509 0.94588 0.80010 1.03077 1.22669 0.98380 0.93850 0.99735 0.88734 1.23215 1.01165 0.95324 0.96296 1.22974 0.97160 0.92836 0.92162 0.91068 1.60231 1.08894 1.18834 1.40906 1.21732 0.94298 0.94580 0.97657 1.19833 0.87151 0.84313 0.86200 1.90525 1.17792 1.74191 1.64257 1.41869 1.11359 1.28516 1.38285 1.19715 0.97234 1.08651 1.17374 0.87910 1.25264 0.95066 0.98730 0.98853 1.69611 1.03576 1.36921 1.44219 0.85854 0.78292 0.80174 0.79951 1.20410 1.20912 1.19397 1.23195 0.99544 0.94199 0.99990 0.89164 0.90423 0.87694 0.80271 0.82710 0.76473 0.90908 0.90331 0.88770 0.91797 0.82854 0.89715 0.93899 0.77487 0.91873 0.91171 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 8.98 36.01 0.32 -0.54 16 2 C 0.13 1.14 6.91 -82.00 -0.57 0.57 16 3 N -0.25 -2.57 11.42 33.81 0.39 -2.18 16 4 N -0.22 -2.10 11.48 30.53 0.35 -1.75 16 5 C 0.03 0.16 11.30 -17.42 -0.20 -0.04 16 6 C -0.08 -0.38 9.68 -38.78 -0.38 -0.76 16 7 C -0.13 -1.01 5.92 -104.58 -0.62 -1.63 16 8 C 0.56 4.66 7.74 -12.19 -0.09 4.56 16 9 O -0.52 -5.79 13.52 5.35 0.07 -5.72 16 10 N -0.72 -4.30 5.52 -61.16 -0.34 -4.63 16 11 C 0.13 0.92 5.51 -4.04 -0.02 0.90 16 12 C -0.13 -0.81 3.75 -89.81 -0.34 -1.15 16 13 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 14 C -0.12 -1.07 7.43 -25.92 -0.19 -1.27 16 15 C 0.06 0.62 4.14 -66.90 -0.28 0.34 16 16 H 0.07 0.69 7.87 -51.93 -0.41 0.29 16 17 N -0.66 -9.79 6.18 -107.13 -0.66 -10.46 16 18 C 0.05 0.84 6.01 -4.97 -0.03 0.81 16 19 C 0.44 10.18 7.82 -10.98 -0.09 10.09 16 20 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 21 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 22 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 25 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 26 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 30 C -0.13 -1.06 7.21 -25.92 -0.19 -1.25 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.90 5.93 -51.93 -0.31 0.59 16 34 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 35 H 0.16 0.16 6.66 -52.49 -0.35 -0.19 16 36 H 0.40 1.30 6.70 -40.82 -0.27 1.02 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 39 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.35 5.46 8.25 -39.29 -0.32 5.13 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.65 8.13 -51.93 -0.42 0.22 16 44 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -34.64 396.50 -7.93 -42.57 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.54 Total: 10.89 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.90 Total: 2.70 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.40 Total: -56.68 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.16 Total: -21.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.64 -7.93 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691103585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.992 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds