Wall clock time and date at job start Wed Apr 1 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 N 1.46504 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99891 * 269.99963 * 4 3 2 6 6 H 1.08004 * 120.00223 * 142.67968 * 5 4 3 7 7 C 1.38812 * 120.00113 * 322.67680 * 5 4 3 8 8 N 1.31620 * 120.00007 * 157.17573 * 7 5 4 9 9 Si 1.86798 * 120.00069 * 337.18134 * 7 5 4 10 10 H 1.48494 * 109.47351 * 95.35792 * 9 7 5 11 11 H 1.48505 * 109.47027 * 215.36158 * 9 7 5 12 12 H 1.48504 * 109.46807 * 335.35622 * 9 7 5 13 13 C 1.46502 * 120.00246 * 89.99831 * 4 3 2 14 14 C 1.53000 * 109.47232 * 267.61695 * 13 4 3 15 15 N 1.46497 * 109.47063 * 178.14294 * 14 13 4 16 16 C 1.34778 * 119.99791 * 180.02562 * 15 14 13 17 17 O 1.21490 * 120.00348 * 359.97438 * 16 15 14 18 18 C 1.48329 * 119.99727 * 179.72593 * 16 15 14 19 19 C 1.42277 * 126.93860 * 179.97438 * 18 16 15 20 20 C 1.35312 * 103.92228 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.66550 * 180.02562 * 20 19 18 22 22 N 1.46492 * 109.47135 * 90.00131 * 21 20 19 23 23 C 1.34952 * 126.03495 * 124.71966 * 22 21 20 24 24 C 1.35317 * 107.74289 * 179.83952 * 23 22 21 25 25 C 1.39866 * 107.92340 * 0.42173 * 24 23 22 26 26 N 1.30845 * 108.20203 * 359.73763 * 25 24 23 27 27 O 1.34022 * 106.67012 * 0.02562 * 20 19 18 28 28 N 1.20905 * 111.84239 * 359.69947 * 27 20 19 29 29 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47522 * 299.99825 * 1 2 3 31 31 H 1.09004 * 109.47065 * 60.00270 * 1 2 3 32 32 H 1.09005 * 109.47510 * 239.99993 * 2 1 3 33 33 H 1.09004 * 109.47065 * 119.99730 * 2 1 3 34 34 H 1.08994 * 109.47460 * 60.00310 * 3 2 1 35 35 H 1.08997 * 109.47281 * 299.99496 * 3 2 1 36 36 H 0.96994 * 120.00411 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47220 * 147.61506 * 13 4 3 38 38 H 1.08999 * 109.46846 * 27.61619 * 13 4 3 39 39 H 1.09000 * 109.47028 * 58.14149 * 14 13 4 40 40 H 1.08993 * 109.47232 * 298.14264 * 14 13 4 41 41 H 0.96999 * 119.99818 * 359.97438 * 15 14 13 42 42 H 1.07999 * 128.03299 * 0.02562 * 19 18 16 43 43 H 1.09003 * 109.47019 * 210.00511 * 21 20 19 44 44 H 1.09004 * 109.47105 * 330.00353 * 21 20 19 45 45 H 1.08002 * 126.12777 * 359.97438 * 23 22 21 46 46 H 1.08006 * 126.04039 * 180.16049 * 24 23 22 47 47 H 1.07997 * 125.90113 * 179.76282 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.4428 1.1868 6 1 5.1033 0.8758 1.2831 7 6 3.7077 2.1718 2.2656 8 7 4.0638 1.8474 3.4905 9 14 2.5545 3.6131 1.9788 10 1 1.1483 3.1582 2.1230 11 1 2.8352 4.6775 2.9757 12 1 2.7635 4.1494 0.6099 13 6 4.2380 1.4424 -1.2678 14 6 4.5452 0.0011 -1.6791 15 7 5.2393 -0.0012 -2.9692 16 6 5.6111 -1.1679 -3.5323 17 8 5.3712 -2.2177 -2.9698 18 6 6.3084 -1.1705 -4.8415 19 6 6.7645 -2.3075 -5.5651 20 6 7.3242 -1.7814 -6.6790 21 6 7.9713 -2.5433 -7.8068 22 7 6.9634 -2.8658 -8.8198 23 6 7.0273 -2.5531 -10.1310 24 6 5.9075 -3.0287 -10.7234 25 6 5.1282 -3.6448 -9.7389 26 7 5.7602 -3.5478 -8.5973 27 8 7.1915 -0.4511 -6.5845 28 7 6.6238 -0.1268 -5.5675 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7272 2.3565 4.2443 37 1 5.1712 1.9929 -1.1482 38 1 3.6314 1.9186 -2.0381 39 1 3.6137 -0.5582 -1.7666 40 1 5.1792 -0.4648 -0.9247 41 1 5.4305 0.8369 -3.4185 42 1 6.6821 -3.3485 -5.2896 43 1 8.7549 -1.9326 -8.2553 44 1 8.4057 -3.4653 -7.4202 45 1 7.8296 -2.0208 -10.6203 46 1 5.6575 -2.9435 -11.7707 47 1 4.1705 -4.1192 -9.8942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691196641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:12 Heat of formation + Delta-G solvation = 135.214022 kcal Electronic energy + Delta-G solvation = -29296.389262 eV Core-core repulsion = 25099.865459 eV Total energy + Delta-G solvation = -4196.523803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.43046 -41.50604 -39.50123 -36.84918 -35.23309 -34.63988 -34.14111 -32.58680 -31.77769 -31.43163 -30.36555 -28.64815 -27.24846 -25.67633 -25.16739 -23.38429 -22.88399 -21.58448 -21.49218 -20.98479 -20.74308 -19.87500 -18.40903 -18.14083 -17.28830 -17.03638 -16.73567 -15.99160 -15.72362 -15.43121 -15.05531 -14.88984 -14.48314 -14.27221 -14.08746 -13.94094 -13.80055 -13.59762 -13.27302 -13.19348 -13.01077 -12.79159 -12.67750 -12.20974 -11.90163 -11.66779 -11.44389 -11.19608 -11.07227 -10.83679 -10.75522 -10.68820 -10.36464 -10.27347 -10.15608 -10.06223 -9.91289 -9.73401 -9.49180 -9.07180 -8.86190 -8.55062 -6.93578 -6.03619 -3.46966 0.70285 1.23962 1.45725 2.19701 2.43666 2.47535 2.96125 3.13599 3.29088 3.44298 3.49102 3.70842 3.97892 4.07754 4.37037 4.48937 4.56007 4.59781 4.70803 4.91007 4.98005 5.05435 5.15137 5.32157 5.34448 5.52201 5.59450 5.59939 5.62214 5.72676 5.81228 6.00725 6.07664 6.14887 6.21133 6.38447 6.44702 6.48755 6.50422 6.51234 6.56086 6.76556 6.92421 7.09770 7.26929 7.42600 7.70660 8.00075 8.13426 8.33403 8.92339 9.65757 10.04045 11.11398 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.001906 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.739819 B =14688.487798 C =15260.270265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.136 3.864 4 N -0.599 5.599 5 C -0.274 4.274 6 H 0.079 0.921 7 C 0.039 3.961 8 N -0.895 5.895 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.270 1.270 13 C 0.140 3.860 14 C 0.094 3.906 15 N -0.706 5.706 16 C 0.591 3.409 17 O -0.521 6.521 18 C -0.021 4.021 19 C -0.133 4.133 20 C -0.072 4.072 21 C 0.225 3.775 22 N -0.380 5.380 23 C 0.057 3.943 24 C -0.271 4.271 25 C 0.048 3.952 26 N -0.286 5.286 27 O 0.129 5.871 28 N -0.322 5.322 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.403 0.597 42 H 0.184 0.816 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.177 0.823 46 H 0.149 0.851 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -7.951 -29.201 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.320 5.320 5 C -0.402 4.402 6 H 0.097 0.903 7 C -0.162 4.162 8 N -0.536 5.536 9 Si 0.710 3.290 10 H -0.213 1.213 11 H -0.230 1.230 12 H -0.195 1.195 13 C 0.013 3.987 14 C -0.031 4.031 15 N -0.357 5.357 16 C 0.374 3.626 17 O -0.395 6.395 18 C -0.181 4.181 19 C -0.156 4.156 20 C -0.136 4.136 21 C 0.103 3.897 22 N -0.164 5.164 23 C -0.088 4.088 24 C -0.300 4.300 25 C -0.139 4.139 26 N -0.107 5.107 27 O 0.051 5.949 28 N -0.020 5.020 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.237 0.763 42 H 0.201 0.799 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.194 0.806 46 H 0.167 0.833 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.665 -7.550 -26.956 28.776 hybrid contribution -0.602 0.575 -1.033 1.327 sum 6.063 -6.975 -27.989 29.475 Atomic orbital electron populations 1.21745 0.97292 1.00688 1.00991 1.22122 0.93919 1.00056 1.02112 1.21280 0.84033 0.94468 0.99155 1.44009 1.00347 1.86076 1.01611 1.18725 1.09315 1.25219 0.86968 0.90316 1.25437 0.97928 0.97677 0.95128 1.69881 1.46373 1.39487 0.97818 0.86902 0.80289 0.84065 0.77782 1.21281 1.22956 1.19503 1.20977 0.97091 0.91942 0.88723 1.22549 0.96648 1.02049 0.81855 1.45965 1.58390 1.07860 1.23486 1.16850 0.78910 0.84813 0.82059 1.90823 1.55046 1.31286 1.62347 1.23709 1.05179 0.89998 0.99176 1.22508 0.98937 1.01420 0.92749 1.24169 1.06179 0.83749 0.99464 1.19897 0.86738 0.99150 0.83950 1.48696 1.16785 1.44571 1.06350 1.22640 1.00750 1.00892 0.84471 1.21578 0.96815 1.10327 1.01316 1.24003 1.00275 0.99467 0.90129 1.77495 0.93895 1.15976 1.23294 1.84779 1.55198 1.22851 1.32102 1.74171 1.09271 1.23435 0.95165 0.93442 0.93112 0.93576 0.92923 0.91232 0.92711 0.94420 0.92622 0.92059 0.93838 0.91366 0.90721 0.76296 0.79862 0.85821 0.85915 0.80576 0.83326 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.14 -2.77 6.26 -26.73 -0.17 -2.94 16 3 C 0.14 2.92 4.56 -4.04 -0.02 2.90 16 4 N -0.60 -13.84 2.08 -173.24 -0.36 -14.20 16 5 C -0.27 -7.50 9.92 -15.06 -0.15 -7.65 16 6 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 7 C 0.04 1.12 5.30 -17.43 -0.09 1.03 16 8 N -0.90 -27.07 13.97 55.49 0.78 -26.29 16 9 Si 0.88 22.03 25.07 -169.99 -4.26 17.77 16 10 H -0.28 -6.95 6.66 56.52 0.38 -6.58 16 11 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.14 2.67 5.83 -4.04 -0.02 2.64 16 14 C 0.09 1.70 5.99 -4.04 -0.02 1.68 16 15 N -0.71 -11.05 5.55 -61.10 -0.34 -11.39 16 16 C 0.59 9.74 7.85 -12.11 -0.10 9.65 16 17 O -0.52 -10.21 16.95 5.37 0.09 -10.12 16 18 C -0.02 -0.29 7.19 -82.52 -0.59 -0.89 16 19 C -0.13 -1.47 10.92 -39.07 -0.43 -1.90 16 20 C -0.07 -0.61 6.91 -35.35 -0.24 -0.86 16 21 C 0.22 1.04 7.07 -5.20 -0.04 1.00 16 22 N -0.38 -2.75 3.67 -62.55 -0.23 -2.98 16 23 C 0.06 0.31 11.45 -17.22 -0.20 0.11 16 24 C -0.27 -1.70 10.80 -40.01 -0.43 -2.13 16 25 C 0.05 0.39 12.03 -17.36 -0.21 0.18 16 26 N -0.29 -2.88 12.41 30.62 0.38 -2.50 16 27 O 0.13 1.33 11.18 17.23 0.19 1.53 16 28 N -0.32 -4.07 11.84 33.30 0.39 -3.67 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.98 6.38 -51.93 -0.33 0.65 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.06 1.30 3.27 -51.93 -0.17 1.13 16 35 H 0.04 0.73 7.88 -51.93 -0.41 0.32 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 1.16 8.06 -51.93 -0.42 0.75 16 38 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.07 1.30 6.38 -51.93 -0.33 0.97 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 5.46 8.23 -40.82 -0.34 5.12 16 42 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.12 0.12 8.07 -51.93 -0.42 -0.30 16 44 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.18 0.28 8.06 -52.49 -0.42 -0.15 16 46 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -35.60 399.15 -6.32 -41.92 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.63 Total: 3.17 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.34 Total: 0.76 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.62 Total: -61.03 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.28 Total: -8.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.26 Total: 17.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.60 -6.32 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.137 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds