Wall clock time and date at job start Wed Apr 1 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 N 1.46504 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99891 * 269.99963 * 4 3 2 6 6 H 1.08004 * 120.00223 * 142.67968 * 5 4 3 7 7 C 1.38812 * 120.00113 * 322.67680 * 5 4 3 8 8 N 1.31620 * 120.00007 * 157.17573 * 7 5 4 9 9 Si 1.86798 * 120.00069 * 337.18134 * 7 5 4 10 10 H 1.48494 * 109.47351 * 95.35792 * 9 7 5 11 11 H 1.48505 * 109.47027 * 215.36158 * 9 7 5 12 12 H 1.48504 * 109.46807 * 335.35622 * 9 7 5 13 13 C 1.46502 * 120.00246 * 89.99831 * 4 3 2 14 14 C 1.53000 * 109.47232 * 267.61695 * 13 4 3 15 15 N 1.46497 * 109.47063 * 178.14294 * 14 13 4 16 16 C 1.34778 * 119.99791 * 180.02562 * 15 14 13 17 17 O 1.21490 * 120.00348 * 359.97438 * 16 15 14 18 18 C 1.48329 * 119.99727 * 179.72593 * 16 15 14 19 19 C 1.42277 * 126.93860 * 179.97438 * 18 16 15 20 20 C 1.35312 * 103.92228 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.66550 * 180.02562 * 20 19 18 22 22 N 1.46492 * 109.47135 * 90.00131 * 21 20 19 23 23 C 1.34952 * 126.03495 * 124.71966 * 22 21 20 24 24 C 1.35317 * 107.74289 * 179.83952 * 23 22 21 25 25 C 1.39866 * 107.92340 * 0.42173 * 24 23 22 26 26 N 1.30845 * 108.20203 * 359.73763 * 25 24 23 27 27 O 1.34022 * 106.67012 * 0.02562 * 20 19 18 28 28 N 1.20905 * 111.84239 * 359.69947 * 27 20 19 29 29 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47522 * 299.99825 * 1 2 3 31 31 H 1.09004 * 109.47065 * 60.00270 * 1 2 3 32 32 H 1.09005 * 109.47510 * 239.99993 * 2 1 3 33 33 H 1.09004 * 109.47065 * 119.99730 * 2 1 3 34 34 H 1.08994 * 109.47460 * 60.00310 * 3 2 1 35 35 H 1.08997 * 109.47281 * 299.99496 * 3 2 1 36 36 H 0.96994 * 120.00411 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47220 * 147.61506 * 13 4 3 38 38 H 1.08999 * 109.46846 * 27.61619 * 13 4 3 39 39 H 1.09000 * 109.47028 * 58.14149 * 14 13 4 40 40 H 1.08993 * 109.47232 * 298.14264 * 14 13 4 41 41 H 0.96999 * 119.99818 * 359.97438 * 15 14 13 42 42 H 1.07999 * 128.03299 * 0.02562 * 19 18 16 43 43 H 1.09003 * 109.47019 * 210.00511 * 21 20 19 44 44 H 1.09004 * 109.47105 * 330.00353 * 21 20 19 45 45 H 1.08002 * 126.12777 * 359.97438 * 23 22 21 46 46 H 1.08006 * 126.04039 * 180.16049 * 24 23 22 47 47 H 1.07997 * 125.90113 * 179.76282 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.4428 1.1868 6 1 5.1033 0.8758 1.2831 7 6 3.7077 2.1718 2.2656 8 7 4.0638 1.8474 3.4905 9 14 2.5545 3.6131 1.9788 10 1 1.1483 3.1582 2.1230 11 1 2.8352 4.6775 2.9757 12 1 2.7635 4.1494 0.6099 13 6 4.2380 1.4424 -1.2678 14 6 4.5452 0.0011 -1.6791 15 7 5.2393 -0.0012 -2.9692 16 6 5.6111 -1.1679 -3.5323 17 8 5.3712 -2.2177 -2.9698 18 6 6.3084 -1.1705 -4.8415 19 6 6.7645 -2.3075 -5.5651 20 6 7.3242 -1.7814 -6.6790 21 6 7.9713 -2.5433 -7.8068 22 7 6.9634 -2.8658 -8.8198 23 6 7.0273 -2.5531 -10.1310 24 6 5.9075 -3.0287 -10.7234 25 6 5.1282 -3.6448 -9.7389 26 7 5.7602 -3.5478 -8.5973 27 8 7.1915 -0.4511 -6.5845 28 7 6.6238 -0.1268 -5.5675 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7272 2.3565 4.2443 37 1 5.1712 1.9929 -1.1482 38 1 3.6314 1.9186 -2.0381 39 1 3.6137 -0.5582 -1.7666 40 1 5.1792 -0.4648 -0.9247 41 1 5.4305 0.8369 -3.4185 42 1 6.6821 -3.3485 -5.2896 43 1 8.7549 -1.9326 -8.2553 44 1 8.4057 -3.4653 -7.4202 45 1 7.8296 -2.0208 -10.6203 46 1 5.6575 -2.9435 -11.7707 47 1 4.1705 -4.1192 -9.8942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691196641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:11 Heat of formation + Delta-G solvation = 110.072829 kcal Electronic energy + Delta-G solvation = -29297.479466 eV Core-core repulsion = 25099.865459 eV Total energy + Delta-G solvation = -4197.614007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.34715 -41.95647 -40.87439 -38.58427 -36.18100 -35.77655 -35.08172 -34.38791 -33.37736 -32.37306 -30.84039 -30.23719 -27.77595 -27.41328 -26.53557 -24.75457 -23.91878 -22.59140 -22.46448 -22.15191 -21.90228 -21.08051 -19.18252 -19.02962 -18.80025 -18.08048 -17.81075 -17.51143 -17.05640 -16.59618 -16.37294 -15.98626 -15.68265 -15.53554 -15.10831 -14.99472 -14.87679 -14.56837 -14.53953 -14.47404 -14.23925 -14.07008 -13.67846 -13.30278 -13.26687 -13.08479 -12.91698 -12.67854 -12.58799 -12.34824 -12.03561 -11.86744 -11.70952 -11.69229 -11.66426 -11.55785 -11.28007 -10.85120 -10.64432 -10.42375 -10.31349 -9.51751 -8.88517 -8.22689 -5.63475 -0.16556 0.34187 0.98726 1.30428 1.40585 1.52072 1.63064 1.75206 1.84439 1.91393 2.01107 2.40358 2.68865 3.00091 3.22755 3.43479 3.67056 3.75292 3.94785 4.03610 4.08541 4.11148 4.18222 4.18987 4.33578 4.36805 4.39259 4.49994 4.53067 4.68281 4.70883 4.75638 4.79173 4.90782 4.96223 4.96751 5.05305 5.15881 5.20544 5.23887 5.35374 5.49378 5.74363 5.91055 6.14121 6.15091 6.17285 6.75483 6.79537 6.87233 6.93831 7.57182 7.97539 8.96621 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.001906 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.739819 B =14688.487798 C =15260.270265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.610 5.610 5 C -0.262 4.262 6 H 0.037 0.963 7 C -0.018 4.018 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.309 1.309 12 H -0.254 1.254 13 C 0.142 3.858 14 C 0.112 3.888 15 N -0.697 5.697 16 C 0.591 3.409 17 O -0.560 6.560 18 C -0.047 4.047 19 C -0.152 4.152 20 C -0.044 4.044 21 C 0.220 3.780 22 N -0.387 5.387 23 C 0.067 3.933 24 C -0.288 4.288 25 C 0.034 3.966 26 N -0.340 5.340 27 O 0.146 5.854 28 N -0.332 5.332 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.415 0.585 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.143 0.857 45 H 0.220 0.780 46 H 0.167 0.833 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -6.772 -33.353 34.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.005 3.995 4 N -0.333 5.333 5 C -0.391 4.391 6 H 0.055 0.945 7 C -0.215 4.215 8 N -0.589 5.589 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.238 1.238 12 H -0.178 1.178 13 C 0.016 3.984 14 C -0.013 4.013 15 N -0.348 5.348 16 C 0.376 3.624 17 O -0.438 6.438 18 C -0.204 4.204 19 C -0.175 4.175 20 C -0.108 4.108 21 C 0.098 3.902 22 N -0.171 5.171 23 C -0.077 4.077 24 C -0.317 4.317 25 C -0.152 4.152 26 N -0.161 5.161 27 O 0.064 5.936 28 N -0.028 5.028 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.252 0.748 42 H 0.203 0.797 43 H 0.189 0.811 44 H 0.161 0.839 45 H 0.236 0.764 46 H 0.184 0.816 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.612 -6.351 -31.149 32.470 hybrid contribution -0.475 0.096 0.094 0.493 sum 6.137 -6.255 -31.055 32.268 Atomic orbital electron populations 1.21699 0.94403 1.02102 1.01910 1.22010 0.96446 0.98525 1.00652 1.21428 0.82787 0.95650 0.99683 1.44097 1.01330 1.86288 1.01543 1.18547 1.08057 1.23713 0.88818 0.94485 1.26079 1.00539 1.00227 0.94662 1.70017 1.49128 1.40966 0.98824 0.85805 0.78664 0.80006 0.77980 1.20059 1.23778 1.17796 1.21068 0.97337 0.92247 0.87752 1.22095 0.95746 1.01226 0.82262 1.45769 1.58019 1.08529 1.22523 1.17201 0.78273 0.84147 0.82827 1.90793 1.56667 1.32570 1.63751 1.23360 1.06871 0.91608 0.98540 1.22628 1.00077 1.01105 0.93688 1.24786 1.03938 0.82631 0.99428 1.20473 0.86569 1.00274 0.82843 1.48848 1.16443 1.44341 1.07446 1.23347 1.01204 0.99518 0.83658 1.21923 0.97112 1.10573 1.02047 1.24383 1.00936 0.99519 0.90406 1.77428 0.95816 1.18178 1.24713 1.84750 1.54023 1.23935 1.30917 1.74156 1.09616 1.23342 0.95663 0.91907 0.93596 0.91180 0.92278 0.94855 0.94641 0.91070 0.92749 0.92166 0.90324 0.92071 0.94137 0.74797 0.79695 0.81081 0.83946 0.76391 0.81595 0.78959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.91 71.98 0.71 -3.64 16 2 C -0.14 -5.23 6.26 30.59 0.19 -5.03 16 3 C 0.13 5.33 4.56 86.38 0.39 5.72 16 4 N -0.61 -28.09 2.08 -702.00 -1.46 -29.56 16 5 C -0.26 -14.80 9.92 84.03 0.83 -13.97 16 6 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 7 C -0.02 -1.06 5.30 84.86 0.45 -0.61 16 8 N -0.95 -59.46 13.97 21.65 0.30 -59.16 16 9 Si 0.95 45.77 25.07 68.60 1.72 47.49 16 10 H -0.27 -12.61 6.66 99.48 0.66 -11.94 16 11 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 12 H -0.25 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.14 5.29 5.83 86.38 0.50 5.79 16 14 C 0.11 4.16 5.99 86.38 0.52 4.68 16 15 N -0.70 -21.86 5.55 -465.52 -2.59 -24.44 16 16 C 0.59 19.92 7.85 86.93 0.68 20.60 16 17 O -0.56 -22.96 16.95 -3.68 -0.06 -23.02 16 18 C -0.05 -1.26 7.19 42.96 0.31 -0.95 16 19 C -0.15 -3.25 10.92 22.60 0.25 -3.01 16 20 C -0.04 -0.65 6.91 25.01 0.17 -0.47 16 21 C 0.22 1.21 7.07 85.63 0.61 1.82 16 22 N -0.39 -4.48 3.67 -351.80 -1.29 -5.77 16 23 C 0.07 0.48 11.45 83.54 0.96 1.44 16 24 C -0.29 -2.94 10.80 21.99 0.24 -2.70 16 25 C 0.03 0.51 12.03 85.23 1.02 1.53 16 26 N -0.34 -6.50 12.41 -57.02 -0.71 -7.20 16 27 O 0.15 2.66 11.18 71.82 0.80 3.46 16 28 N -0.33 -7.95 11.84 -49.50 -0.59 -8.53 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 32 H 0.06 2.16 6.38 -2.38 -0.02 2.15 16 33 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.04 1.62 3.27 -2.39 -0.01 1.61 16 35 H 0.07 2.48 7.88 -2.39 -0.02 2.46 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 38 H 0.08 2.42 7.87 -2.39 -0.02 2.40 16 39 H 0.06 2.36 6.38 -2.39 -0.02 2.34 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.42 10.90 8.23 -92.71 -0.76 10.13 16 42 H 0.19 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.17 -0.66 8.07 -2.39 -0.02 -0.68 16 44 H 0.14 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.22 -0.52 8.06 -2.91 -0.02 -0.54 16 46 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -82.44 399.15 4.16 -78.28 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.19 Total: 17.26 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.84 Total: 11.20 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -6.33 Total: -134.67 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.74 Total: -19.56 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.72 Total: 47.49 kcal Total: -82.44 4.16 -78.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.352 kcal (2) G-P(sol) polarization free energy of solvation -82.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds