Wall clock time and date at job start Wed Apr 1 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38565 * 119.96860 * 2 1 4 4 C 1.38823 * 118.06927 * 179.97438 * 3 2 1 5 5 C 1.39717 * 117.89802 * 0.02562 * 4 3 2 6 6 C 1.48163 * 120.18196 * 180.02562 * 5 4 3 7 7 O 1.21511 * 119.99701 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99640 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46848 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.85486 * 316.19597 * 10 9 8 12 12 C 1.53777 * 113.69191 * 87.46677 * 10 9 8 13 13 C 1.53777 * 87.08794 * 139.98759 * 12 10 9 14 14 H 1.09006 * 113.68924 * 89.12373 * 13 12 10 15 15 N 1.46895 * 113.62268 * 220.01658 * 13 12 10 16 16 C 1.46893 * 111.00318 * 252.49831 * 15 13 12 17 17 C 1.50708 * 109.47146 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99815 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99349 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00515 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99490 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.47194 * 300.00675 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00238 * 24 22 20 28 28 C 1.53780 * 87.07996 * 334.56904 * 13 12 10 29 29 N 1.32781 * 119.63458 * 0.27387 * 5 4 3 30 30 N 1.28342 * 122.02786 * 359.42375 * 29 5 4 31 31 H 1.08996 * 109.47540 * 89.99262 * 1 2 3 32 32 H 1.08996 * 109.47368 * 210.00095 * 1 2 3 33 33 H 1.09008 * 109.46562 * 329.99738 * 1 2 3 34 34 H 1.07997 * 120.96576 * 0.02562 * 3 2 1 35 35 H 1.08002 * 121.04865 * 179.97438 * 4 3 2 36 36 H 0.96995 * 120.00122 * 359.97438 * 8 6 5 37 37 H 1.09005 * 109.47254 * 59.99716 * 9 8 6 38 38 H 1.09000 * 109.46935 * 299.99576 * 9 8 6 39 39 H 1.09000 * 113.61520 * 25.44002 * 12 10 9 40 40 H 1.09005 * 113.61906 * 254.54040 * 12 10 9 41 41 H 1.00908 * 110.99391 * 16.44993 * 15 13 12 42 42 H 1.09002 * 109.47091 * 59.99845 * 16 15 13 43 43 H 1.09000 * 109.47343 * 299.99463 * 16 15 13 44 44 H 0.96996 * 120.00564 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99781 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61883 * 139.97788 * 28 13 12 47 47 H 1.09004 * 113.61310 * 270.79697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 0.0005 5 6 4.1991 -0.1014 0.0005 6 6 5.6768 -0.2095 0.0017 7 8 6.3594 0.7957 0.0022 8 7 6.2636 -1.4227 0.0011 9 6 7.7247 -1.5296 0.0028 10 6 8.1281 -3.0054 0.0024 11 1 7.5396 -3.6053 0.6966 12 6 8.2327 -3.6170 -1.4047 13 6 9.4825 -4.3596 -0.9036 14 1 9.2657 -5.3300 -0.4569 15 7 10.5689 -4.4160 -1.8907 16 6 10.7097 -5.7704 -2.4419 17 6 11.8308 -5.7889 -3.4489 18 8 12.4511 -4.7736 -3.6845 19 7 12.1433 -6.9334 -4.0883 20 6 13.1635 -6.9503 -5.0040 21 1 13.7164 -6.0466 -5.2133 22 6 13.4861 -8.1304 -5.6629 23 7 12.8137 -9.2303 -5.4079 24 14 14.8757 -8.1534 -6.9111 25 1 15.0184 -9.5226 -7.4678 26 1 14.5706 -7.2012 -8.0091 27 1 16.1432 -7.7547 -6.2481 28 6 9.6445 -3.2296 0.1268 29 7 3.4496 -1.1974 -0.0055 30 7 2.1672 -1.1451 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5139 34 1 1.6745 2.1444 0.0004 35 1 4.1740 2.0607 0.0002 36 1 5.7187 -2.2251 0.0003 37 1 8.1235 -1.0445 0.8938 38 1 8.1256 -1.0427 -0.8862 39 1 8.4431 -2.8850 -2.1844 40 1 7.4034 -4.2782 -1.6562 41 1 10.4252 -3.7397 -2.6256 42 1 9.7794 -6.0629 -2.9289 43 1 10.9333 -6.4693 -1.6359 44 1 11.6470 -7.7453 -3.9001 45 1 13.0387 -10.0540 -5.8682 46 1 9.9549 -3.5781 1.1119 47 1 10.2420 -2.3923 -0.2337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691440534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:59 Heat of formation + Delta-G solvation = 3.180470 kcal Electronic energy + Delta-G solvation = -28138.908403 eV Core-core repulsion = 23936.659195 eV Total energy + Delta-G solvation = -4202.249208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76320 -40.07403 -39.19320 -38.01970 -35.30147 -34.63339 -34.01067 -33.64934 -33.14133 -31.18187 -29.60113 -28.03895 -26.32393 -25.74273 -25.51924 -24.14291 -23.70154 -21.79027 -21.39853 -20.00895 -19.12785 -18.61231 -18.00542 -17.84333 -16.42050 -16.23412 -16.17393 -16.03285 -15.70001 -15.35648 -15.23880 -14.85403 -14.50009 -14.31871 -14.12126 -13.85556 -13.80359 -13.72817 -13.39139 -13.08275 -13.01546 -12.55934 -12.50005 -12.35305 -12.06970 -11.78240 -11.53318 -11.50326 -11.07114 -10.99050 -10.88915 -10.77837 -10.47058 -10.42723 -10.37826 -10.34204 -10.31839 -10.18526 -9.47989 -9.42463 -8.41770 -7.98674 -7.92231 -6.39642 -3.80437 -0.13008 0.16202 2.15992 2.55564 3.09864 3.21854 3.26511 3.27283 3.31920 3.73719 3.92374 3.93553 4.06089 4.11958 4.31214 4.33983 4.34455 4.41078 4.50546 4.73035 4.80363 4.88131 4.89009 4.98524 5.07906 5.21675 5.22131 5.27249 5.30361 5.35648 5.44027 5.55150 5.62742 5.69833 5.72777 5.83442 5.88465 5.99045 6.01528 6.14726 6.23034 6.36181 7.02869 7.31090 7.57000 7.66742 7.70594 7.98882 8.08500 8.63680 9.19963 9.56684 10.08365 10.78022 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.001398 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.103120 B =20020.910964 C =20561.222952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.085 3.915 3 C -0.123 4.123 4 C -0.061 4.061 5 C 0.017 3.983 6 C 0.574 3.426 7 O -0.528 6.528 8 N -0.704 5.704 9 C 0.129 3.871 10 C -0.126 4.126 11 H 0.097 0.903 12 C -0.166 4.166 13 C 0.069 3.931 14 H 0.096 0.904 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.284 1.284 26 H -0.274 1.274 27 H -0.273 1.273 28 C -0.115 4.115 29 N -0.205 5.205 30 N -0.241 5.241 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.279 17.148 14.532 34.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.129 4.129 6 C 0.357 3.643 7 O -0.404 6.404 8 N -0.355 5.355 9 C 0.006 3.994 10 C -0.145 4.145 11 H 0.115 0.885 12 C -0.205 4.205 13 C -0.043 4.043 14 H 0.114 0.886 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.210 1.210 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.154 4.154 29 N -0.052 5.052 30 N -0.086 5.086 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.172 0.828 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.819 16.594 14.730 33.291 hybrid contribution -0.667 0.484 -1.112 1.384 sum -25.486 17.078 13.618 33.565 Atomic orbital electron populations 1.20770 0.86861 1.04543 1.04129 1.23145 0.99520 0.90432 0.92704 1.22353 0.94244 1.00275 0.98307 1.22475 0.95113 0.99251 0.92178 1.22842 0.96441 0.92156 1.01497 1.17548 0.85175 0.84193 0.77400 1.90824 1.63529 1.36063 1.49956 1.45891 1.08523 1.08137 1.72903 1.21533 0.78331 0.96630 1.02922 1.22679 0.98639 0.94446 0.98722 0.88472 1.23854 0.99908 1.00374 0.96352 1.22987 0.88776 0.98037 0.94463 0.88577 1.60016 1.43904 1.05810 1.19094 1.21714 0.97299 0.91504 0.97741 1.19856 0.87517 0.84833 0.85257 1.90520 1.55120 1.33399 1.67768 1.41860 1.31892 1.09609 1.36691 1.19664 1.10174 0.97113 1.16040 0.87987 1.25255 0.98939 0.94809 0.98887 1.69606 1.41111 1.00345 1.43298 0.85919 0.80916 0.77100 0.80285 1.20986 1.19939 1.19885 1.23058 0.93248 0.99467 0.99666 1.73195 0.99890 1.26125 1.05968 1.73107 1.00796 1.24598 1.10081 0.89267 0.89486 0.89838 0.82366 0.81842 0.75159 0.90809 0.90629 0.89566 0.91374 0.82805 0.93858 0.89640 0.77464 0.91849 0.91023 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.28 10.19 36.01 0.37 0.09 16 2 C 0.08 0.52 6.87 -82.32 -0.57 -0.05 16 3 C -0.12 -0.58 9.86 -39.24 -0.39 -0.97 16 4 C -0.06 -0.42 9.73 -38.81 -0.38 -0.80 16 5 C 0.02 0.16 6.83 -82.83 -0.57 -0.41 16 6 C 0.57 6.08 7.82 -12.19 -0.10 5.98 16 7 O -0.53 -6.94 16.39 5.36 0.09 -6.86 16 8 N -0.70 -6.36 5.55 -61.15 -0.34 -6.69 16 9 C 0.13 1.16 5.51 -4.04 -0.02 1.13 16 10 C -0.13 -1.04 3.75 -89.81 -0.34 -1.38 16 11 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 12 C -0.17 -1.62 7.25 -25.92 -0.19 -1.81 16 13 C 0.07 0.80 4.18 -66.91 -0.28 0.52 16 14 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16 15 N -0.66 -10.49 6.24 -107.14 -0.67 -11.16 16 16 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 17 C 0.44 10.50 7.82 -10.98 -0.09 10.42 16 18 O -0.58 -16.06 15.78 5.55 0.09 -15.98 16 19 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.12 -1.16 7.44 -25.92 -0.19 -1.35 16 29 N -0.21 -2.04 10.75 33.32 0.36 -1.69 16 30 N -0.24 -2.24 11.43 33.62 0.38 -1.86 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.04 8.09 -51.92 -0.42 -0.38 16 34 H 0.16 0.18 8.06 -52.49 -0.42 -0.25 16 35 H 0.16 0.92 7.72 -52.49 -0.41 0.51 16 36 H 0.41 3.27 7.83 -40.82 -0.32 2.95 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 39 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.35 5.85 7.89 -39.29 -0.31 5.54 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -34.86 403.27 -8.09 -42.95 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.72 Total: 13.33 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.00 Total: 4.13 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.40 Total: -59.87 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.86 -8.09 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691440534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.134 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds