Wall clock time and date at job start Wed Apr 1 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38565 * 119.96860 * 2 1 4 4 C 1.38823 * 118.06927 * 179.97438 * 3 2 1 5 5 C 1.39717 * 117.89802 * 0.02562 * 4 3 2 6 6 C 1.48163 * 120.18196 * 180.02562 * 5 4 3 7 7 O 1.21511 * 119.99701 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99640 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46848 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.85486 * 316.19597 * 10 9 8 12 12 C 1.53777 * 113.69191 * 87.46677 * 10 9 8 13 13 C 1.53777 * 87.08794 * 139.98759 * 12 10 9 14 14 H 1.09006 * 113.68924 * 89.12373 * 13 12 10 15 15 N 1.46895 * 113.62268 * 220.01658 * 13 12 10 16 16 C 1.46893 * 111.00318 * 252.49831 * 15 13 12 17 17 C 1.50708 * 109.47146 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99815 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99349 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00515 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99490 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.47194 * 300.00675 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00238 * 24 22 20 28 28 C 1.53780 * 87.07996 * 334.56904 * 13 12 10 29 29 N 1.32781 * 119.63458 * 0.27387 * 5 4 3 30 30 N 1.28342 * 122.02786 * 359.42375 * 29 5 4 31 31 H 1.08996 * 109.47540 * 89.99262 * 1 2 3 32 32 H 1.08996 * 109.47368 * 210.00095 * 1 2 3 33 33 H 1.09008 * 109.46562 * 329.99738 * 1 2 3 34 34 H 1.07997 * 120.96576 * 0.02562 * 3 2 1 35 35 H 1.08002 * 121.04865 * 179.97438 * 4 3 2 36 36 H 0.96995 * 120.00122 * 359.97438 * 8 6 5 37 37 H 1.09005 * 109.47254 * 59.99716 * 9 8 6 38 38 H 1.09000 * 109.46935 * 299.99576 * 9 8 6 39 39 H 1.09000 * 113.61520 * 25.44002 * 12 10 9 40 40 H 1.09005 * 113.61906 * 254.54040 * 12 10 9 41 41 H 1.00908 * 110.99391 * 16.44993 * 15 13 12 42 42 H 1.09002 * 109.47091 * 59.99845 * 16 15 13 43 43 H 1.09000 * 109.47343 * 299.99463 * 16 15 13 44 44 H 0.96996 * 120.00564 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99781 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61883 * 139.97788 * 28 13 12 47 47 H 1.09004 * 113.61310 * 270.79697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 0.0005 5 6 4.1991 -0.1014 0.0005 6 6 5.6768 -0.2095 0.0017 7 8 6.3594 0.7957 0.0022 8 7 6.2636 -1.4227 0.0011 9 6 7.7247 -1.5296 0.0028 10 6 8.1281 -3.0054 0.0024 11 1 7.5396 -3.6053 0.6966 12 6 8.2327 -3.6170 -1.4047 13 6 9.4825 -4.3596 -0.9036 14 1 9.2657 -5.3300 -0.4569 15 7 10.5689 -4.4160 -1.8907 16 6 10.7097 -5.7704 -2.4419 17 6 11.8308 -5.7889 -3.4489 18 8 12.4511 -4.7736 -3.6845 19 7 12.1433 -6.9334 -4.0883 20 6 13.1635 -6.9503 -5.0040 21 1 13.7164 -6.0466 -5.2133 22 6 13.4861 -8.1304 -5.6629 23 7 12.8137 -9.2303 -5.4079 24 14 14.8757 -8.1534 -6.9111 25 1 15.0184 -9.5226 -7.4678 26 1 14.5706 -7.2012 -8.0091 27 1 16.1432 -7.7547 -6.2481 28 6 9.6445 -3.2296 0.1268 29 7 3.4496 -1.1974 -0.0055 30 7 2.1672 -1.1451 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5139 34 1 1.6745 2.1444 0.0004 35 1 4.1740 2.0607 0.0002 36 1 5.7187 -2.2251 0.0003 37 1 8.1235 -1.0445 0.8938 38 1 8.1256 -1.0427 -0.8862 39 1 8.4431 -2.8850 -2.1844 40 1 7.4034 -4.2782 -1.6562 41 1 10.4252 -3.7397 -2.6256 42 1 9.7794 -6.0629 -2.9289 43 1 10.9333 -6.4693 -1.6359 44 1 11.6470 -7.7453 -3.9001 45 1 13.0387 -10.0540 -5.8682 46 1 9.9549 -3.5781 1.1119 47 1 10.2420 -2.3923 -0.2337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691440534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:59 Heat of formation + Delta-G solvation = -24.427622 kcal Electronic energy + Delta-G solvation = -28140.105580 eV Core-core repulsion = 23936.659195 eV Total energy + Delta-G solvation = -4203.446385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33125 -40.89995 -40.27643 -39.68237 -36.31142 -35.89686 -35.14221 -34.36852 -34.18429 -33.23471 -30.18817 -28.93113 -27.72487 -26.55642 -26.20795 -25.71019 -24.29311 -22.64842 -22.16755 -21.27875 -20.56907 -19.88296 -19.31826 -18.57194 -17.75973 -17.07907 -16.91464 -16.86339 -16.67516 -16.42940 -16.34728 -15.98761 -15.83792 -15.67251 -15.28294 -14.98046 -14.69216 -14.37921 -14.22914 -14.07714 -13.70385 -13.56165 -13.50961 -13.33348 -13.22691 -12.98897 -12.85090 -12.66836 -12.61945 -12.43760 -12.13373 -11.90697 -11.60626 -11.50437 -11.38734 -11.30539 -11.17240 -10.88429 -10.86347 -10.32734 -10.20545 -10.01710 -9.20320 -8.46591 -5.95559 -0.68086 -0.32587 1.39787 1.41586 1.47216 1.52620 1.85332 2.05541 2.29499 2.49328 2.70800 2.97258 3.20586 3.27357 3.45945 3.51695 3.59861 3.61886 3.71702 3.83776 3.92676 3.96261 4.05849 4.25204 4.35219 4.43144 4.52558 4.54271 4.59999 4.62775 4.70681 4.75814 4.84166 4.88294 4.93005 4.93631 4.99997 5.11303 5.20127 5.28847 5.30632 5.40288 5.46509 5.94593 6.20470 6.28419 6.43612 6.60501 6.91663 7.12461 7.42622 7.56299 8.11896 8.70476 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.001398 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.103120 B =20020.910964 C =20561.222952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.082 3.918 3 C -0.105 4.105 4 C -0.071 4.071 5 C -0.002 4.002 6 C 0.572 3.428 7 O -0.562 6.562 8 N -0.696 5.696 9 C 0.131 3.869 10 C -0.104 4.104 11 H 0.119 0.881 12 C -0.161 4.161 13 C 0.062 3.938 14 H 0.111 0.889 15 N -0.673 5.673 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.114 4.114 29 N -0.226 5.226 30 N -0.275 5.275 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.202 0.798 35 H 0.173 0.827 36 H 0.418 0.582 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.082 0.918 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.444 17.397 15.223 36.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.099 4.099 5 C -0.148 4.148 6 C 0.356 3.644 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.008 3.992 10 C -0.123 4.123 11 H 0.137 0.863 12 C -0.200 4.200 13 C -0.048 4.048 14 H 0.129 0.871 15 N -0.304 5.304 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.153 4.153 29 N -0.072 5.072 30 N -0.119 5.119 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.219 0.781 35 H 0.190 0.810 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.022 16.795 15.447 35.368 hybrid contribution -0.095 0.465 -1.292 1.377 sum -27.117 17.260 14.154 35.123 Atomic orbital electron populations 1.20927 0.84283 1.05776 1.05151 1.23760 1.01165 0.90053 0.91066 1.22820 0.93255 1.01565 0.95741 1.22706 0.96370 0.98632 0.92222 1.22752 0.95592 0.93307 1.03185 1.17813 0.85884 0.84009 0.76718 1.90794 1.64414 1.37028 1.51735 1.45860 1.08530 1.08136 1.72111 1.21466 0.78367 0.97040 1.02284 1.22555 0.97662 0.94011 0.98114 0.86334 1.23776 0.99261 1.00086 0.96882 1.23195 0.88329 0.99409 0.93903 0.87123 1.60049 1.46506 1.04578 1.19294 1.21580 0.95372 0.93140 0.96584 1.20981 0.88053 0.83523 0.85168 1.90486 1.56895 1.34724 1.69100 1.41929 1.31772 1.10413 1.36865 1.19645 1.11837 0.96983 1.18227 0.90411 1.26031 1.00927 0.94062 1.00098 1.69665 1.41884 1.00698 1.43764 0.84995 0.77820 0.77708 0.77842 1.19365 1.19737 1.19764 1.23025 0.94277 0.98412 0.99610 1.73106 1.00500 1.26673 1.06907 1.73029 1.00600 1.26629 1.11684 0.88121 0.89961 0.86923 0.78081 0.80972 0.74415 0.90825 0.92006 0.90681 0.90345 0.83685 0.91616 0.87739 0.76939 0.91271 0.89919 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.19 71.24 0.73 0.47 16 2 C 0.08 0.85 6.87 42.58 0.29 1.14 16 3 C -0.11 -0.73 9.86 22.49 0.22 -0.51 16 4 C -0.07 -0.90 9.73 22.77 0.22 -0.68 16 5 C 0.00 -0.03 6.83 42.00 0.29 0.26 16 6 C 0.57 12.36 7.82 86.88 0.68 13.04 16 7 O -0.56 -15.19 16.39 -3.75 -0.06 -15.26 16 8 N -0.70 -12.51 5.55 -465.67 -2.58 -15.09 16 9 C 0.13 2.33 5.51 86.38 0.48 2.81 16 10 C -0.10 -1.58 3.75 -10.27 -0.04 -1.62 16 11 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 12 C -0.16 -2.97 7.25 31.12 0.23 -2.74 16 13 C 0.06 1.34 4.18 45.44 0.19 1.53 16 14 H 0.11 2.13 7.87 -2.38 -0.02 2.11 16 15 N -0.67 -21.21 6.24 -492.87 -3.08 -24.29 16 16 C 0.07 2.26 6.01 85.56 0.51 2.77 16 17 C 0.44 21.10 7.82 87.66 0.69 21.78 16 18 O -0.63 -35.47 15.78 -3.05 -0.05 -35.52 16 19 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 20 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.78 7.16 -2.92 -0.02 4.76 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.96 13.05 21.66 0.28 -49.67 16 24 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 28 C -0.11 -2.16 7.44 31.12 0.23 -1.93 16 29 N -0.23 -4.50 10.75 -48.48 -0.52 -5.02 16 30 N -0.27 -4.96 11.43 -47.53 -0.54 -5.51 16 31 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.11 -0.35 8.09 -2.38 -0.02 -0.37 16 34 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 35 H 0.17 1.79 7.72 -2.91 -0.02 1.77 16 36 H 0.42 6.45 7.83 -92.71 -0.73 5.72 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 39 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 40 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.34 11.62 7.89 -89.69 -0.71 10.91 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 3.22 8.13 -2.39 -0.02 3.20 16 44 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 45 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.70 8.10 -2.38 -0.02 1.68 16 Total: -1.00 -78.08 403.27 -1.29 -79.36 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -1.13 Total: 39.53 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.99 Total: 17.51 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -8.07 Total: -131.05 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.11 Total: -50.78 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -78.08 -1.29 -79.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691440534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.935 kcal (2) G-P(sol) polarization free energy of solvation -78.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds