Wall clock time and date at job start Wed Apr 1 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46911 * 2 1 4 4 H 1.09000 * 110.06071 * 306.42294 * 3 2 1 5 5 C 1.53988 * 109.91471 * 185.21952 * 3 2 1 6 6 H 1.09005 * 110.31285 * 358.43585 * 5 3 2 7 7 N 1.46494 * 110.31110 * 120.50845 * 5 3 2 8 8 C 1.34783 * 120.00302 * 203.61027 * 7 5 3 9 9 O 1.21515 * 119.99744 * 359.97438 * 8 7 5 10 10 C 1.48144 * 120.00226 * 179.97438 * 8 7 5 11 11 C 1.39441 * 120.09918 * 179.97438 * 10 8 7 12 12 N 1.32081 * 119.87266 * 180.02562 * 11 10 8 13 13 C 1.32126 * 120.07477 * 0.02562 * 12 11 10 14 14 C 1.38736 * 120.19562 * 359.97438 * 13 12 11 15 15 N 1.31802 * 120.12577 * 359.72683 * 14 13 12 16 16 C 1.54599 * 105.22330 * 239.47233 * 5 3 2 17 17 C 1.55194 * 102.80421 * 338.01373 * 16 5 3 18 18 N 1.47901 * 109.91445 * 67.62819 * 3 2 1 19 19 C 1.46902 * 111.00062 * 265.19498 * 18 3 2 20 20 C 1.50696 * 109.47337 * 183.58312 * 19 18 3 21 21 O 1.21297 * 119.99915 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00093 * 180.02562 * 22 20 19 24 24 H 1.08006 * 120.00010 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00221 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00242 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47268 * 59.99897 * 27 25 23 29 29 H 1.48501 * 109.47335 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.47222 * 300.00419 * 27 25 23 31 31 H 1.08998 * 109.47479 * 52.74357 * 1 2 3 32 32 H 1.09002 * 109.46911 * 172.74962 * 1 2 3 33 33 H 1.09001 * 109.47036 * 292.74191 * 1 2 3 34 34 H 1.08998 * 109.46923 * 240.00256 * 2 1 3 35 35 H 1.08993 * 109.47248 * 119.99931 * 2 1 3 36 36 H 0.97001 * 120.00077 * 23.87820 * 7 5 3 37 37 H 1.08001 * 120.05982 * 0.03658 * 11 10 8 38 38 H 1.08000 * 119.90245 * 180.02562 * 13 12 11 39 39 H 1.08003 * 119.93324 * 180.02562 * 14 13 12 40 40 H 1.09001 * 110.72532 * 96.35202 * 16 5 3 41 41 H 1.09004 * 110.72531 * 219.63687 * 16 5 3 42 42 H 1.09003 * 110.68543 * 278.99359 * 17 16 5 43 43 H 1.09003 * 110.64582 * 155.85895 * 17 16 5 44 44 H 1.09003 * 109.47298 * 303.58270 * 19 18 3 45 45 H 1.08998 * 109.47057 * 63.57816 * 19 18 3 46 46 H 0.97002 * 119.99750 * 359.97438 * 22 20 19 47 47 H 0.97007 * 119.99686 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5915 1.9977 -0.8239 5 6 3.5742 1.4566 -0.1317 6 1 3.9601 0.4378 -0.1680 7 7 3.9748 2.1942 -1.3323 8 6 5.1693 1.9492 -1.9066 9 8 5.9141 1.1168 -1.4282 10 6 5.5741 2.6947 -3.1211 11 6 6.8097 2.4433 -3.7166 12 7 7.1663 3.1109 -4.7990 13 6 6.3543 4.0157 -5.3164 14 6 5.1243 4.2683 -4.7263 15 7 4.7581 3.6024 -3.6495 16 6 4.0839 2.1786 1.1367 17 6 2.8465 3.0010 1.5851 18 7 1.7089 2.0940 1.2859 19 6 0.4496 2.8439 1.1873 20 6 0.1905 3.5637 2.4856 21 8 0.9774 3.4617 3.4031 22 7 -0.9159 4.3201 2.6277 23 6 -1.1513 4.9754 3.8087 24 1 -0.4503 4.8852 4.6254 25 6 -2.2917 5.7556 3.9551 26 7 -3.1448 5.8649 2.9616 27 14 -2.6127 6.6478 5.5644 28 1 -1.4970 7.5881 5.8403 29 1 -3.8861 7.4054 5.4650 30 1 -2.7106 5.6587 6.6679 31 1 -0.3634 0.6221 -0.8179 32 1 -0.3633 -1.0195 -0.1297 33 1 -0.3633 0.3973 0.9478 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.3820 2.8617 -1.7118 37 1 7.4736 1.7039 -3.2936 38 1 6.6486 4.5598 -6.2018 39 1 4.4637 5.0085 -5.1531 40 1 4.3672 1.4576 1.9035 41 1 4.9194 2.8364 0.8967 42 1 2.7663 3.9219 1.0075 43 1 2.8952 3.2177 2.6522 44 1 0.5215 3.5699 0.3774 45 1 -0.3694 2.1537 0.9848 46 1 -1.5453 4.4014 1.8941 47 1 -3.9412 6.4093 3.0639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691457411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:46 Heat of formation + Delta-G solvation = -9.757536 kcal Electronic energy + Delta-G solvation = -30299.945135 eV Core-core repulsion = 26097.134894 eV Total energy + Delta-G solvation = -4202.810242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71181 -40.25768 -38.96186 -37.64907 -35.10631 -34.40697 -33.91762 -33.03145 -32.27400 -31.36213 -30.75915 -27.78273 -26.77059 -25.70790 -24.98796 -24.21074 -22.68709 -21.91360 -20.54284 -20.31344 -19.20450 -18.45441 -18.05929 -17.85305 -17.26284 -16.42420 -15.92647 -15.80298 -15.67832 -15.27354 -15.12956 -14.75025 -14.51919 -14.22099 -14.05618 -13.89103 -13.56197 -13.31670 -13.24281 -12.71540 -12.57495 -12.26968 -12.22290 -12.17240 -11.82804 -11.60045 -11.38779 -11.30681 -11.19032 -11.06242 -10.96461 -10.69709 -10.57601 -10.48188 -10.43167 -10.22695 -9.98657 -9.63505 -9.49766 -9.24734 -8.43654 -8.03426 -7.93163 -6.43093 -3.83833 -0.10994 0.51374 2.33851 2.65698 3.18898 3.24786 3.29079 3.30876 3.47065 3.67375 3.88376 3.90783 4.03177 4.23216 4.35022 4.43548 4.62069 4.67960 4.71435 4.97459 4.99826 5.12419 5.20462 5.23809 5.27383 5.40631 5.49228 5.63096 5.68118 5.72920 5.75503 5.83459 5.93402 5.97106 6.02135 6.16231 6.24039 6.27401 6.35981 6.44156 6.56919 6.60995 7.02202 7.17960 7.22292 7.28592 7.53780 7.81507 8.04477 8.60181 9.16659 9.52586 10.04393 10.74558 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.002278 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.231805 B =12286.941413 C =13112.907747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C 0.058 3.942 4 H 0.057 0.943 5 C 0.135 3.865 6 H 0.103 0.897 7 N -0.699 5.699 8 C 0.575 3.425 9 O -0.526 6.526 10 C 0.030 3.970 11 C 0.109 3.891 12 N -0.440 5.440 13 C 0.072 3.928 14 C 0.052 3.948 15 N -0.412 5.412 16 C -0.132 4.132 17 C 0.039 3.961 18 N -0.483 5.483 19 C 0.031 3.969 20 C 0.443 3.557 21 O -0.579 6.579 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.273 1.273 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.409 0.591 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.096 0.904 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.348 -5.767 -18.312 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.051 4.051 4 H 0.075 0.925 5 C 0.030 3.970 6 H 0.121 0.879 7 N -0.349 5.349 8 C 0.359 3.641 9 O -0.401 6.401 10 C -0.111 4.111 11 C -0.050 4.050 12 N -0.154 5.154 13 C -0.089 4.089 14 C -0.111 4.111 15 N -0.130 5.130 16 C -0.171 4.171 17 C -0.088 4.088 18 N -0.207 5.207 19 C -0.100 4.100 20 C 0.229 3.771 21 O -0.463 6.463 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.245 0.755 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.132 0.868 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.123 -6.755 -16.888 23.028 hybrid contribution -1.020 1.728 -0.729 2.135 sum 13.103 -5.027 -17.618 22.524 Atomic orbital electron populations 1.21879 0.95556 1.01316 1.02462 1.21471 0.96369 0.94339 1.01998 1.22757 0.92751 0.97183 0.92426 0.92516 1.22014 0.94222 0.96927 0.83821 0.87949 1.46046 1.18571 1.41586 1.28747 1.17616 0.82149 0.82147 0.82215 1.90819 1.52143 1.33669 1.63497 1.22254 0.94059 0.96959 0.97836 1.23872 0.94288 0.96381 0.90464 1.68645 1.32582 1.05045 1.09138 1.24154 0.91327 0.93892 0.99535 1.23907 0.96503 0.98451 0.92222 1.68363 1.32266 1.03277 1.09065 1.22999 0.97953 0.99692 0.96443 1.23459 0.88124 0.92978 1.04267 1.64542 1.01681 1.28132 1.26356 1.22259 0.93765 0.96919 0.97052 1.19690 0.84125 0.83991 0.89322 1.90475 1.47358 1.66255 1.42211 1.41842 1.20286 1.42251 1.15578 1.19641 1.06600 1.24076 0.92499 0.87965 1.25254 0.95697 0.97964 0.99005 1.69605 1.12420 1.40607 1.31708 0.85926 0.77538 0.79324 0.81482 1.19939 1.20992 1.19867 0.93200 0.92933 0.91276 0.92140 0.90628 0.75457 0.79935 0.80569 0.80374 0.89620 0.91066 0.94647 0.86843 0.93609 0.88594 0.77518 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.76 37.16 0.33 -1.44 16 2 C -0.10 -1.17 5.38 -26.73 -0.14 -1.32 16 3 C 0.06 0.72 2.37 -66.64 -0.16 0.56 16 4 H 0.06 0.67 7.15 -51.93 -0.37 0.30 16 5 C 0.13 1.62 2.95 -66.58 -0.20 1.42 16 6 H 0.10 1.26 7.14 -51.93 -0.37 0.89 16 7 N -0.70 -7.68 5.06 -53.34 -0.27 -7.95 16 8 C 0.58 6.74 7.81 -12.19 -0.10 6.65 16 9 O -0.53 -7.37 16.02 5.35 0.09 -7.29 16 10 C 0.03 0.30 6.75 -82.84 -0.56 -0.26 16 11 C 0.11 1.01 10.77 -17.00 -0.18 0.83 16 12 N -0.44 -3.77 10.49 -12.71 -0.13 -3.91 16 13 C 0.07 0.42 11.23 -17.24 -0.19 0.22 16 14 C 0.05 0.31 11.22 -17.38 -0.20 0.12 16 15 N -0.41 -3.71 9.71 -9.61 -0.09 -3.81 16 16 C -0.13 -1.76 6.80 -24.73 -0.17 -1.93 16 17 C 0.04 0.63 5.55 -1.76 -0.01 0.62 16 18 N -0.48 -7.66 4.67 -223.83 -1.05 -8.71 16 19 C 0.03 0.54 4.98 -4.98 -0.02 0.52 16 20 C 0.44 10.19 7.51 -10.99 -0.08 10.11 16 21 O -0.58 -15.10 13.57 5.54 0.08 -15.02 16 22 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 23 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 24 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 27 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.41 4.17 7.66 -40.82 -0.31 3.86 16 37 H 0.18 1.52 7.65 -52.49 -0.40 1.12 16 38 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.18 0.48 8.06 -52.48 -0.42 0.05 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 42 H 0.04 0.57 8.01 -51.93 -0.42 0.16 16 43 H 0.11 2.21 6.26 -51.93 -0.32 1.89 16 44 H 0.05 0.73 7.98 -51.93 -0.41 0.31 16 45 H 0.10 1.53 5.35 -51.93 -0.28 1.25 16 46 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -32.67 387.72 -8.25 -40.91 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.42 Total: 13.42 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.93 Total: 8.25 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.88 Total: -62.01 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.67 -8.25 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691457411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.155 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds