Wall clock time and date at job start Wed Apr 1 2020 04:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46911 * 2 1 4 4 H 1.09000 * 110.06071 * 306.42294 * 3 2 1 5 5 C 1.53988 * 109.91471 * 185.21952 * 3 2 1 6 6 H 1.09005 * 110.31285 * 358.43585 * 5 3 2 7 7 N 1.46494 * 110.31110 * 120.50845 * 5 3 2 8 8 C 1.34783 * 120.00302 * 203.61027 * 7 5 3 9 9 O 1.21515 * 119.99744 * 359.97438 * 8 7 5 10 10 C 1.48144 * 120.00226 * 179.97438 * 8 7 5 11 11 C 1.39441 * 120.09918 * 179.97438 * 10 8 7 12 12 N 1.32081 * 119.87266 * 180.02562 * 11 10 8 13 13 C 1.32126 * 120.07477 * 0.02562 * 12 11 10 14 14 C 1.38736 * 120.19562 * 359.97438 * 13 12 11 15 15 N 1.31802 * 120.12577 * 359.72683 * 14 13 12 16 16 C 1.54599 * 105.22330 * 239.47233 * 5 3 2 17 17 C 1.55194 * 102.80421 * 338.01373 * 16 5 3 18 18 N 1.47901 * 109.91445 * 67.62819 * 3 2 1 19 19 C 1.46902 * 111.00062 * 265.19498 * 18 3 2 20 20 C 1.50696 * 109.47337 * 183.58312 * 19 18 3 21 21 O 1.21297 * 119.99915 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00093 * 180.02562 * 22 20 19 24 24 H 1.08006 * 120.00010 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00221 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00242 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47268 * 59.99897 * 27 25 23 29 29 H 1.48501 * 109.47335 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.47222 * 300.00419 * 27 25 23 31 31 H 1.08998 * 109.47479 * 52.74357 * 1 2 3 32 32 H 1.09002 * 109.46911 * 172.74962 * 1 2 3 33 33 H 1.09001 * 109.47036 * 292.74191 * 1 2 3 34 34 H 1.08998 * 109.46923 * 240.00256 * 2 1 3 35 35 H 1.08993 * 109.47248 * 119.99931 * 2 1 3 36 36 H 0.97001 * 120.00077 * 23.87820 * 7 5 3 37 37 H 1.08001 * 120.05982 * 0.03658 * 11 10 8 38 38 H 1.08000 * 119.90245 * 180.02562 * 13 12 11 39 39 H 1.08003 * 119.93324 * 180.02562 * 14 13 12 40 40 H 1.09001 * 110.72532 * 96.35202 * 16 5 3 41 41 H 1.09004 * 110.72531 * 219.63687 * 16 5 3 42 42 H 1.09003 * 110.68543 * 278.99359 * 17 16 5 43 43 H 1.09003 * 110.64582 * 155.85895 * 17 16 5 44 44 H 1.09003 * 109.47298 * 303.58270 * 19 18 3 45 45 H 1.08998 * 109.47057 * 63.57816 * 19 18 3 46 46 H 0.97002 * 119.99750 * 359.97438 * 22 20 19 47 47 H 0.97007 * 119.99686 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5915 1.9977 -0.8239 5 6 3.5742 1.4566 -0.1317 6 1 3.9601 0.4378 -0.1680 7 7 3.9748 2.1942 -1.3323 8 6 5.1693 1.9492 -1.9066 9 8 5.9141 1.1168 -1.4282 10 6 5.5741 2.6947 -3.1211 11 6 6.8097 2.4433 -3.7166 12 7 7.1663 3.1109 -4.7990 13 6 6.3543 4.0157 -5.3164 14 6 5.1243 4.2683 -4.7263 15 7 4.7581 3.6024 -3.6495 16 6 4.0839 2.1786 1.1367 17 6 2.8465 3.0010 1.5851 18 7 1.7089 2.0940 1.2859 19 6 0.4496 2.8439 1.1873 20 6 0.1905 3.5637 2.4856 21 8 0.9774 3.4617 3.4031 22 7 -0.9159 4.3201 2.6277 23 6 -1.1513 4.9754 3.8087 24 1 -0.4503 4.8852 4.6254 25 6 -2.2917 5.7556 3.9551 26 7 -3.1448 5.8649 2.9616 27 14 -2.6127 6.6478 5.5644 28 1 -1.4970 7.5881 5.8403 29 1 -3.8861 7.4054 5.4650 30 1 -2.7106 5.6587 6.6679 31 1 -0.3634 0.6221 -0.8179 32 1 -0.3633 -1.0195 -0.1297 33 1 -0.3633 0.3973 0.9478 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.3820 2.8617 -1.7118 37 1 7.4736 1.7039 -3.2936 38 1 6.6486 4.5598 -6.2018 39 1 4.4637 5.0085 -5.1531 40 1 4.3672 1.4576 1.9035 41 1 4.9194 2.8364 0.8967 42 1 2.7663 3.9219 1.0075 43 1 2.8952 3.2177 2.6522 44 1 0.5215 3.5699 0.3774 45 1 -0.3694 2.1537 0.9848 46 1 -1.5453 4.4014 1.8941 47 1 -3.9412 6.4093 3.0639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691457411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:45 Heat of formation + Delta-G solvation = -35.768613 kcal Electronic energy + Delta-G solvation = -30301.073060 eV Core-core repulsion = 26097.134894 eV Total energy + Delta-G solvation = -4203.938167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35145 -41.32130 -40.24334 -39.18702 -36.08438 -35.77439 -35.17381 -34.10759 -33.31649 -32.92948 -31.97841 -28.83307 -28.22436 -26.61901 -25.92972 -25.48249 -23.74734 -22.93977 -21.58004 -21.36305 -20.94144 -19.86253 -19.25971 -18.69919 -17.83924 -17.60401 -17.38698 -16.79290 -16.57915 -16.47194 -16.43198 -16.04222 -15.77351 -15.42675 -15.37636 -15.16940 -14.81121 -14.24222 -14.17152 -13.88607 -13.84936 -13.64033 -13.44172 -13.36200 -12.94606 -12.83267 -12.55957 -12.49186 -12.42519 -12.38071 -12.34710 -12.12471 -11.97701 -11.80956 -11.57882 -11.49675 -11.42194 -10.58995 -10.28401 -10.23838 -10.12660 -9.99690 -9.34757 -8.45859 -5.94032 -0.71737 -0.04759 1.39417 1.41511 1.51998 1.55647 1.80854 2.05834 2.28729 2.68039 2.75879 2.90437 3.16626 3.20920 3.28970 3.35599 3.42930 3.71102 3.73301 4.00102 4.06722 4.10069 4.23284 4.28572 4.31789 4.34317 4.41223 4.46817 4.50958 4.55377 4.66112 4.73130 4.85646 4.95346 5.05419 5.14336 5.20214 5.22811 5.30508 5.37678 5.42274 5.50717 5.84861 5.95337 6.00066 6.11083 6.27726 6.59427 6.61582 6.94576 7.13965 7.57000 8.13105 8.71358 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.002278 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.231805 B =12286.941413 C =13112.907747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C 0.064 3.936 4 H 0.073 0.927 5 C 0.145 3.855 6 H 0.104 0.896 7 N -0.692 5.692 8 C 0.577 3.423 9 O -0.556 6.556 10 C 0.009 3.991 11 C 0.102 3.898 12 N -0.461 5.461 13 C 0.086 3.914 14 C 0.057 3.943 15 N -0.428 5.428 16 C -0.123 4.123 17 C 0.043 3.957 18 N -0.497 5.497 19 C 0.045 3.955 20 C 0.441 3.559 21 O -0.613 6.613 22 N -0.573 5.573 23 C -0.331 4.331 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.991 3.009 28 H -0.272 1.272 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.181 0.819 38 H 0.218 0.782 39 H 0.217 0.783 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 -5.209 -20.887 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.045 4.045 4 H 0.090 0.910 5 C 0.039 3.961 6 H 0.122 0.878 7 N -0.343 5.343 8 C 0.361 3.639 9 O -0.433 6.433 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.175 5.175 13 C -0.076 4.076 14 C -0.107 4.107 15 N -0.146 5.146 16 C -0.162 4.162 17 C -0.085 4.085 18 N -0.222 5.222 19 C -0.086 4.086 20 C 0.228 3.772 21 O -0.499 6.499 22 N -0.211 5.211 23 C -0.460 4.460 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.252 0.748 37 H 0.198 0.802 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.133 0.867 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.837 -6.220 -19.473 24.685 hybrid contribution -0.879 1.602 -0.049 1.828 sum 12.959 -4.618 -19.522 23.882 Atomic orbital electron populations 1.21853 0.95412 1.02289 1.01495 1.21474 0.96414 0.93418 1.02575 1.22799 0.92997 0.97708 0.90987 0.90965 1.21836 0.93863 0.96827 0.83525 0.87828 1.45942 1.18620 1.41511 1.28229 1.17882 0.81738 0.81727 0.82527 1.90795 1.52931 1.35066 1.64556 1.21924 0.94845 0.98302 0.97936 1.23848 0.94122 0.96728 0.90934 1.68697 1.33591 1.06084 1.09145 1.24889 0.90553 0.92318 0.99817 1.24603 0.97096 0.98028 0.90941 1.68338 1.32478 1.03500 1.10299 1.22895 0.96727 0.99337 0.97220 1.23246 0.89780 0.93612 1.01841 1.64501 1.00919 1.27766 1.28966 1.22134 0.95201 0.97336 0.93940 1.20704 0.82726 0.82895 0.90859 1.90467 1.48228 1.67074 1.44179 1.41903 1.21141 1.42918 1.15107 1.19595 1.07180 1.26053 0.93219 0.90369 1.25999 0.95007 0.98088 1.02129 1.69663 1.12620 1.40823 1.32990 0.85026 0.77792 0.78146 0.77604 1.19775 1.19490 1.19819 0.92129 0.91587 0.93644 0.90001 0.91613 0.74798 0.80222 0.76521 0.76659 0.89869 0.90899 0.94832 0.90772 0.91520 0.86733 0.77063 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.76 71.98 0.63 -2.55 16 2 C -0.10 -2.09 5.38 30.60 0.16 -1.92 16 3 C 0.06 1.48 2.37 45.06 0.11 1.59 16 4 H 0.07 1.50 7.15 -2.39 -0.02 1.48 16 5 C 0.14 3.34 2.95 45.87 0.14 3.48 16 6 H 0.10 2.45 7.14 -2.38 -0.02 2.43 16 7 N -0.69 -14.51 5.06 -440.96 -2.23 -16.74 16 8 C 0.58 13.29 7.81 86.87 0.68 13.97 16 9 O -0.56 -15.70 16.02 -3.76 -0.06 -15.76 16 10 C 0.01 0.18 6.75 41.89 0.28 0.46 16 11 C 0.10 1.83 10.77 84.95 0.92 2.75 16 12 N -0.46 -7.12 10.49 -194.12 -2.04 -9.15 16 13 C 0.09 0.72 11.23 84.77 0.95 1.67 16 14 C 0.06 0.50 11.22 84.82 0.95 1.46 16 15 N -0.43 -6.88 9.71 -184.33 -1.79 -8.67 16 16 C -0.12 -3.31 6.80 31.89 0.22 -3.09 16 17 C 0.04 1.42 5.55 86.74 0.48 1.90 16 18 N -0.50 -15.65 4.67 -862.06 -4.03 -19.68 16 19 C 0.05 1.53 4.98 85.56 0.43 1.96 16 20 C 0.44 20.73 7.51 87.66 0.66 21.39 16 21 O -0.61 -33.34 13.57 -3.08 -0.04 -33.38 16 22 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 23 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 27 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 31 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.16 6.25 -2.39 -0.01 1.15 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 7.81 7.66 -92.71 -0.71 7.10 16 37 H 0.18 3.11 7.65 -2.91 -0.02 3.09 16 38 H 0.22 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.22 0.15 8.06 -2.91 -0.02 0.12 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 1.94 8.05 -2.38 -0.02 1.92 16 42 H 0.03 1.10 8.01 -2.39 -0.02 1.08 16 43 H 0.07 3.07 6.26 -2.39 -0.01 3.05 16 44 H 0.07 2.01 7.98 -2.39 -0.02 1.99 16 45 H 0.11 3.52 5.35 -2.39 -0.01 3.50 16 46 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 47 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -73.13 387.72 -2.03 -75.17 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.41 Total: 38.13 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 7.88 Total: 24.98 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -11.43 Total: -134.03 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.10 Total: -49.15 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.13 -2.03 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691457411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.399 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds