Wall clock time and date at job start Wed Apr 1 2020 04:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39903 * 109.47146 * 2 1 4 4 F 1.39892 * 109.47353 * 239.99109 * 2 1 3 5 5 C 1.53008 * 109.46671 * 119.99448 * 2 1 3 6 6 C 1.50697 * 109.46858 * 180.02562 * 5 2 1 7 7 O 1.21276 * 120.00454 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99786 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00178 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46978 * 180.02562 * 9 8 6 11 11 H 1.08991 * 110.01908 * 306.38893 * 10 9 8 12 12 C 1.53878 * 110.03376 * 67.83743 * 10 9 8 13 13 C 1.54464 * 106.68737 * 119.44010 * 12 10 9 14 14 C 1.54886 * 104.10083 * 23.34083 * 13 12 10 15 15 H 1.08994 * 110.75726 * 80.70844 * 14 13 12 16 16 N 1.46901 * 110.75362 * 203.89480 * 14 13 12 17 17 C 1.46898 * 111.00189 * 271.06408 * 16 14 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 C 1.54276 * 110.02934 * 184.99876 * 10 9 8 30 30 H 1.08997 * 109.47326 * 300.01255 * 1 2 3 31 31 H 1.09006 * 109.46408 * 60.00574 * 1 2 3 32 32 H 1.08993 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47279 * 59.99720 * 5 2 1 34 34 H 1.09006 * 109.46947 * 300.00225 * 5 2 1 35 35 H 0.96998 * 120.00057 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46816 * 60.00318 * 9 8 6 37 37 H 1.09000 * 109.46836 * 300.00154 * 9 8 6 38 38 H 1.09003 * 110.02856 * 238.56700 * 12 10 9 39 39 H 1.09000 * 110.02850 * 359.97438 * 12 10 9 40 40 H 1.09004 * 110.40224 * 264.75921 * 13 12 10 41 41 H 1.08992 * 110.66318 * 142.05351 * 13 12 10 42 42 H 1.00894 * 111.00335 * 35.02368 * 16 14 13 43 43 H 1.09000 * 109.46741 * 60.00112 * 17 16 14 44 44 H 1.09002 * 109.46898 * 300.00102 * 17 16 14 45 45 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 47 47 H 1.08996 * 110.48427 * 98.42590 * 29 10 9 48 48 H 1.08999 * 110.59435 * 335.84507 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1421 5 6 2.0400 -0.7212 1.2494 6 6 3.5469 -0.7207 1.2498 7 8 4.1534 -0.1957 0.3402 8 7 4.2207 -1.3036 2.2610 9 6 5.6858 -1.3037 2.2612 10 6 6.1956 -2.0247 3.5106 11 1 5.7471 -1.5878 4.4027 12 6 5.8571 -3.5236 3.4292 13 6 7.2009 -4.2843 3.4646 14 6 8.1757 -3.2967 4.1527 15 1 8.0551 -3.3264 5.2355 16 7 9.5652 -3.5903 3.7773 17 6 10.1640 -4.5668 4.6970 18 6 11.5862 -4.8417 4.2816 19 8 12.0551 -4.2793 3.3147 20 7 12.3374 -5.7120 4.9850 21 6 13.6312 -5.9626 4.6067 22 1 14.0484 -5.4624 3.7454 23 6 14.4075 -6.8555 5.3353 24 7 13.9014 -7.4601 6.3867 25 14 16.1704 -7.1964 4.8203 26 1 16.4975 -6.3949 3.6137 27 1 17.0898 -6.8239 5.9255 28 1 16.3258 -8.6408 4.5128 29 6 7.7331 -1.9238 3.5885 30 1 -0.3634 0.5140 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -1.7488 1.2495 34 1 1.6765 -0.2072 2.1393 35 1 3.7357 -1.7232 2.9887 36 1 6.0491 -0.2760 2.2606 37 1 6.0491 -1.8181 1.3715 38 1 5.2442 -3.8148 4.2823 39 1 5.3292 -3.7372 2.4998 40 1 7.5371 -4.5091 2.4523 41 1 7.1095 -5.1996 4.0492 42 1 9.6218 -3.9110 2.8224 43 1 9.5906 -5.4933 4.6668 44 1 10.1530 -4.1655 5.7104 45 1 11.9625 -6.1616 5.7585 46 1 14.4433 -8.0837 6.8950 47 1 8.0289 -1.1207 4.2634 48 1 8.1575 -1.7637 2.5974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691626411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:59 Heat of formation + Delta-G solvation = -192.932818 kcal Electronic energy + Delta-G solvation = -29646.034745 eV Core-core repulsion = 24984.592241 eV Total energy + Delta-G solvation = -4661.442505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.23139 -47.21675 -40.17594 -38.97573 -38.00148 -35.48634 -34.08195 -33.80907 -33.30655 -31.21132 -30.15577 -28.97463 -28.41456 -26.02261 -24.58578 -23.56083 -22.52329 -21.11137 -20.41050 -20.03206 -19.20727 -18.00919 -17.91571 -17.86555 -17.22483 -16.48135 -16.24634 -16.08000 -15.66011 -15.57524 -14.97860 -14.72107 -14.47255 -14.21040 -14.10920 -13.94774 -13.71680 -13.56301 -13.47742 -13.33123 -13.19643 -13.09772 -12.79322 -12.61823 -12.51349 -12.39597 -12.08393 -11.68179 -11.51982 -11.43488 -11.38175 -11.22464 -11.12905 -11.03523 -10.74333 -10.70768 -10.33704 -10.26172 -10.21405 -9.51396 -9.44979 -8.43965 -8.00821 -7.94115 -6.41404 -3.82011 2.19486 2.59125 3.16887 3.26881 3.27465 3.35042 3.55160 3.89534 3.91188 3.92616 4.08341 4.26025 4.30332 4.40947 4.50616 4.55187 4.64881 4.72468 4.94859 4.96931 5.11118 5.17588 5.18373 5.22754 5.23206 5.27007 5.31256 5.38332 5.52281 5.58579 5.66021 5.72332 5.79050 5.85702 5.97445 6.01476 6.08497 6.17554 6.18200 6.30757 7.01805 7.28248 7.56075 7.69156 7.77853 8.07488 8.62036 9.18764 9.55122 10.06695 10.76462 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.036889 B = 0.001377 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.853862 B =20326.581824 C =20572.108472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.306 3.694 3 F -0.192 7.192 4 F -0.192 7.192 5 C -0.190 4.190 6 C 0.509 3.491 7 O -0.519 6.519 8 N -0.727 5.727 9 C 0.126 3.874 10 C -0.104 4.104 11 H 0.079 0.921 12 C -0.118 4.118 13 C -0.157 4.157 14 C 0.085 3.915 15 H 0.083 0.917 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.104 4.104 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.351 0.649 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.072 0.928 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.625 10.299 -3.456 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.269 3.731 3 F -0.173 7.173 4 F -0.173 7.173 5 C -0.231 4.231 6 C 0.294 3.706 7 O -0.394 6.394 8 N -0.379 5.379 9 C 0.003 3.997 10 C -0.123 4.123 11 H 0.097 0.903 12 C -0.156 4.156 13 C -0.197 4.197 14 C -0.026 4.026 15 H 0.102 0.898 16 N -0.292 5.292 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.142 4.142 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -30.436 11.488 -4.357 32.823 hybrid contribution 0.018 -1.618 0.457 1.681 sum -30.418 9.870 -3.900 32.216 Atomic orbital electron populations 1.22809 0.91179 1.05586 1.05748 1.20604 0.93074 0.76091 0.83307 1.93055 1.90568 1.36938 1.96770 1.93055 1.90558 1.80713 1.52964 1.22866 0.95115 1.05181 0.99943 1.20184 0.89163 0.78809 0.82474 1.90824 1.69855 1.43610 1.35143 1.45969 1.07958 1.58928 1.25084 1.21558 0.78411 1.01272 0.98492 1.22027 0.97432 0.95720 0.97147 0.90307 1.22194 0.97627 0.94003 1.01784 1.23167 0.96058 0.99040 1.01407 1.22580 0.86864 0.93845 0.99299 0.89847 1.60065 1.15129 1.47108 1.06928 1.21687 0.94763 0.94193 0.97486 1.19847 0.87465 0.83757 0.86358 1.90527 1.73625 1.52995 1.29527 1.41875 1.12379 1.38135 1.27748 1.19767 0.87448 1.22988 1.12625 0.87865 1.25257 1.00382 0.96573 0.95736 1.69622 1.37773 1.29081 1.17908 0.85802 0.81774 0.78103 0.78690 1.19201 1.20753 1.20788 1.22287 0.91837 0.97561 1.02551 0.89115 0.89565 0.89098 0.85857 0.85875 0.76546 0.91138 0.91000 0.91774 0.91639 0.91274 0.91591 0.82899 0.93931 0.89692 0.77493 0.91960 0.90884 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.61 9.38 37.16 0.35 -0.27 16 2 C 0.31 2.23 1.85 -26.72 -0.05 2.18 16 3 F -0.19 -2.03 16.14 2.25 0.04 -1.99 16 4 F -0.19 -2.05 16.15 2.25 0.04 -2.02 16 5 C -0.19 -0.89 5.30 -27.88 -0.15 -1.04 16 6 C 0.51 4.56 7.60 -10.99 -0.08 4.47 16 7 O -0.52 -7.37 14.83 5.56 0.08 -7.29 16 8 N -0.73 -4.81 5.34 -60.29 -0.32 -5.14 16 9 C 0.13 1.05 4.69 -4.04 -0.02 1.03 16 10 C -0.10 -0.76 2.96 -89.50 -0.27 -1.02 16 11 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 12 C -0.12 -0.85 6.19 -25.51 -0.16 -1.01 16 13 C -0.16 -1.54 6.43 -24.97 -0.16 -1.70 16 14 C 0.09 0.97 3.19 -65.72 -0.21 0.76 16 15 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 16 N -0.66 -10.45 5.99 -105.90 -0.63 -11.08 16 17 C 0.05 0.89 6.04 -4.98 -0.03 0.86 16 18 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 19 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 20 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C -0.10 -1.04 6.05 -25.07 -0.15 -1.19 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.40 1.37 8.35 -40.82 -0.34 1.03 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.47 7.61 -51.93 -0.40 0.08 16 40 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.35 5.82 7.96 -39.29 -0.31 5.51 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -36.20 402.69 -7.85 -44.05 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.60 Total: 10.01 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.25 Total: 5.40 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.29 Total: -54.46 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.20 -7.85 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691626411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.885 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds