Wall clock time and date at job start Wed Apr 1 2020 04:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39903 * 109.47146 * 2 1 4 4 F 1.39892 * 109.47353 * 239.99109 * 2 1 3 5 5 C 1.53008 * 109.46671 * 119.99448 * 2 1 3 6 6 C 1.50697 * 109.46858 * 180.02562 * 5 2 1 7 7 O 1.21276 * 120.00454 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99786 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00178 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46978 * 180.02562 * 9 8 6 11 11 H 1.08991 * 110.01908 * 306.38893 * 10 9 8 12 12 C 1.53878 * 110.03376 * 67.83743 * 10 9 8 13 13 C 1.54464 * 106.68737 * 119.44010 * 12 10 9 14 14 C 1.54886 * 104.10083 * 23.34083 * 13 12 10 15 15 H 1.08994 * 110.75726 * 80.70844 * 14 13 12 16 16 N 1.46901 * 110.75362 * 203.89480 * 14 13 12 17 17 C 1.46898 * 111.00189 * 271.06408 * 16 14 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 C 1.54276 * 110.02934 * 184.99876 * 10 9 8 30 30 H 1.08997 * 109.47326 * 300.01255 * 1 2 3 31 31 H 1.09006 * 109.46408 * 60.00574 * 1 2 3 32 32 H 1.08993 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47279 * 59.99720 * 5 2 1 34 34 H 1.09006 * 109.46947 * 300.00225 * 5 2 1 35 35 H 0.96998 * 120.00057 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46816 * 60.00318 * 9 8 6 37 37 H 1.09000 * 109.46836 * 300.00154 * 9 8 6 38 38 H 1.09003 * 110.02856 * 238.56700 * 12 10 9 39 39 H 1.09000 * 110.02850 * 359.97438 * 12 10 9 40 40 H 1.09004 * 110.40224 * 264.75921 * 13 12 10 41 41 H 1.08992 * 110.66318 * 142.05351 * 13 12 10 42 42 H 1.00894 * 111.00335 * 35.02368 * 16 14 13 43 43 H 1.09000 * 109.46741 * 60.00112 * 17 16 14 44 44 H 1.09002 * 109.46898 * 300.00102 * 17 16 14 45 45 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 47 47 H 1.08996 * 110.48427 * 98.42590 * 29 10 9 48 48 H 1.08999 * 110.59435 * 335.84507 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1421 5 6 2.0400 -0.7212 1.2494 6 6 3.5469 -0.7207 1.2498 7 8 4.1534 -0.1957 0.3402 8 7 4.2207 -1.3036 2.2610 9 6 5.6858 -1.3037 2.2612 10 6 6.1956 -2.0247 3.5106 11 1 5.7471 -1.5878 4.4027 12 6 5.8571 -3.5236 3.4292 13 6 7.2009 -4.2843 3.4646 14 6 8.1757 -3.2967 4.1527 15 1 8.0551 -3.3264 5.2355 16 7 9.5652 -3.5903 3.7773 17 6 10.1640 -4.5668 4.6970 18 6 11.5862 -4.8417 4.2816 19 8 12.0551 -4.2793 3.3147 20 7 12.3374 -5.7120 4.9850 21 6 13.6312 -5.9626 4.6067 22 1 14.0484 -5.4624 3.7454 23 6 14.4075 -6.8555 5.3353 24 7 13.9014 -7.4601 6.3867 25 14 16.1704 -7.1964 4.8203 26 1 16.4975 -6.3949 3.6137 27 1 17.0898 -6.8239 5.9255 28 1 16.3258 -8.6408 4.5128 29 6 7.7331 -1.9238 3.5885 30 1 -0.3634 0.5140 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -1.7488 1.2495 34 1 1.6765 -0.2072 2.1393 35 1 3.7357 -1.7232 2.9887 36 1 6.0491 -0.2760 2.2606 37 1 6.0491 -1.8181 1.3715 38 1 5.2442 -3.8148 4.2823 39 1 5.3292 -3.7372 2.4998 40 1 7.5371 -4.5091 2.4523 41 1 7.1095 -5.1996 4.0492 42 1 9.6218 -3.9110 2.8224 43 1 9.5906 -5.4933 4.6668 44 1 10.1530 -4.1655 5.7104 45 1 11.9625 -6.1616 5.7585 46 1 14.4433 -8.0837 6.8950 47 1 8.0289 -1.1207 4.2634 48 1 8.1575 -1.7637 2.5974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691626411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:58 Heat of formation + Delta-G solvation = -220.901653 kcal Electronic energy + Delta-G solvation = -29647.247565 eV Core-core repulsion = 24984.592241 eV Total energy + Delta-G solvation = -4662.655324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.85179 -47.88113 -40.89341 -40.26314 -39.41874 -36.50903 -35.89436 -34.61967 -34.07476 -33.25347 -30.84932 -29.68686 -29.23353 -27.49131 -25.80920 -24.78357 -23.03739 -21.83575 -21.33158 -21.03855 -20.62274 -19.91052 -18.58185 -18.48740 -17.88463 -17.72328 -17.25552 -16.79119 -16.73472 -16.35136 -16.32605 -16.08898 -15.91308 -15.57163 -15.13660 -14.80156 -14.67505 -14.37500 -14.31413 -14.23199 -13.94511 -13.75072 -13.64727 -13.53683 -13.36825 -13.17074 -13.05644 -13.01591 -12.95062 -12.72496 -12.41655 -12.30913 -12.12197 -12.03427 -11.95818 -11.82521 -11.58763 -11.51831 -11.34131 -10.99213 -10.34633 -10.13927 -10.01981 -9.22155 -8.47648 -5.96275 1.35977 1.41440 1.55593 1.56067 2.04299 2.04762 2.28999 2.83684 2.94144 3.18932 3.19723 3.43936 3.51765 3.54274 3.62190 3.71224 4.00090 4.05030 4.19986 4.29234 4.36668 4.40125 4.44150 4.46162 4.52776 4.54599 4.61198 4.67809 4.70491 4.72917 4.84883 4.86507 4.95394 5.05945 5.07382 5.14977 5.26446 5.31400 5.40700 5.41334 5.51211 5.93459 6.18512 6.42431 6.49414 6.59889 7.12241 7.21523 7.55681 8.11502 8.69938 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.036889 B = 0.001377 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.853862 B =20326.581824 C =20572.108472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.282 3.718 3 F -0.219 7.219 4 F -0.220 7.220 5 C -0.180 4.180 6 C 0.499 3.501 7 O -0.583 6.583 8 N -0.709 5.709 9 C 0.130 3.870 10 C -0.087 4.087 11 H 0.105 0.895 12 C -0.109 4.109 13 C -0.155 4.155 14 C 0.083 3.917 15 H 0.097 0.903 16 N -0.679 5.679 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.270 1.270 29 C -0.105 4.105 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.421 0.579 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.342 0.658 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.073 0.927 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.249 9.401 -1.241 35.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.245 3.755 3 F -0.200 7.200 4 F -0.201 7.201 5 C -0.219 4.219 6 C 0.286 3.714 7 O -0.463 6.463 8 N -0.362 5.362 9 C 0.006 3.994 10 C -0.106 4.106 11 H 0.123 0.877 12 C -0.147 4.147 13 C -0.195 4.195 14 C -0.027 4.027 15 H 0.115 0.885 16 N -0.310 5.310 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.144 4.144 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -33.118 10.561 -2.071 34.823 hybrid contribution 0.832 -1.308 -0.243 1.569 sum -32.286 9.253 -2.314 33.665 Atomic orbital electron populations 1.22827 0.87656 1.07347 1.06552 1.21486 0.95600 0.74966 0.83405 1.92996 1.91160 1.38977 1.96872 1.92995 1.91164 1.81148 1.54779 1.22977 0.91416 1.07515 1.00016 1.21041 0.91123 0.77599 0.81660 1.90802 1.71475 1.46420 1.37598 1.45802 1.07144 1.58102 1.25190 1.21362 0.79695 1.00162 0.98220 1.21898 0.95251 0.96067 0.97376 0.87663 1.22161 0.96412 0.92995 1.03121 1.23109 0.96960 0.99128 1.00289 1.22715 0.84786 0.94928 1.00237 0.88498 1.60083 1.18181 1.46577 1.06171 1.21538 0.90591 0.95935 0.98372 1.20988 0.89604 0.82025 0.85102 1.90494 1.75213 1.54223 1.31324 1.41933 1.11975 1.38852 1.28226 1.19704 0.89250 1.24555 1.13004 0.90519 1.26013 1.03939 0.95681 0.95446 1.69673 1.39155 1.29004 1.18160 0.84883 0.77078 0.78234 0.78212 1.19984 1.19541 1.19477 1.22271 0.93928 0.96897 1.01281 0.86707 0.90424 0.86812 0.82225 0.82066 0.74141 0.92809 0.93380 0.89043 0.91459 0.92911 0.91037 0.83918 0.91567 0.87734 0.76906 0.91267 0.90843 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.72 9.38 71.98 0.68 -0.04 16 2 C 0.28 3.82 1.85 30.60 0.06 3.87 16 3 F -0.22 -4.71 16.14 44.97 0.73 -3.98 16 4 F -0.22 -4.81 16.15 44.97 0.73 -4.08 16 5 C -0.18 -1.17 5.30 29.85 0.16 -1.01 16 6 C 0.50 8.44 7.60 87.66 0.67 9.11 16 7 O -0.58 -17.31 14.83 -3.02 -0.04 -17.35 16 8 N -0.71 -7.97 5.34 -463.06 -2.47 -10.44 16 9 C 0.13 2.11 4.69 86.38 0.40 2.51 16 10 C -0.09 -1.07 2.96 -10.07 -0.03 -1.10 16 11 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 12 C -0.11 -1.24 6.19 31.39 0.19 -1.04 16 13 C -0.16 -2.75 6.43 31.74 0.20 -2.55 16 14 C 0.08 1.77 3.19 46.20 0.15 1.92 16 15 H 0.10 1.84 7.86 -2.39 -0.02 1.82 16 16 N -0.68 -21.33 5.99 -488.94 -2.93 -24.26 16 17 C 0.07 2.30 6.04 85.56 0.52 2.82 16 18 C 0.44 20.98 7.82 87.66 0.69 21.67 16 19 O -0.63 -35.57 15.78 -3.05 -0.05 -35.62 16 20 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 21 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.74 7.16 -2.92 -0.02 4.72 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 C -0.10 -2.02 6.05 31.67 0.19 -1.83 16 30 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.16 -0.19 8.14 -2.38 -0.02 -0.21 16 35 H 0.42 1.23 8.35 -92.71 -0.77 0.46 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.79 7.61 -2.39 -0.02 0.77 16 40 H 0.05 1.11 7.79 -2.38 -0.02 1.09 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.34 11.67 7.96 -89.70 -0.71 10.96 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.10 3.16 8.08 -2.39 -0.02 3.14 16 45 H 0.40 19.32 7.90 -92.70 -0.73 18.58 16 46 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 1.31 7.86 -2.39 -0.02 1.29 16 Total: -1.00 -84.49 402.69 0.57 -83.92 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -1.22 Total: 31.27 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 5.15 Total: 15.72 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.75 Total: -115.16 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.09 Total: -52.97 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 1.45 Total: -8.06 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -84.49 0.57 -83.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691626411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.985 kcal (2) G-P(sol) polarization free energy of solvation -84.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds