Wall clock time and date at job start Wed Apr 1 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31919 * 119.03636 * 2 1 4 4 C 1.32180 * 121.03291 * 180.02562 * 3 2 1 5 5 C 1.38800 * 119.14617 * 359.71804 * 4 3 2 6 6 C 1.39497 * 118.26301 * 0.52015 * 5 4 3 7 7 C 1.48456 * 120.55126 * 179.75631 * 6 5 4 8 8 O 1.21479 * 119.99801 * 359.72171 * 7 6 5 9 9 N 1.34775 * 120.00312 * 179.72277 * 7 6 5 10 10 C 1.46497 * 120.00063 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.53964 * 35.09939 * 10 9 7 12 12 C 1.53120 * 109.50232 * 274.99699 * 10 9 7 13 13 C 1.53114 * 109.16161 * 182.40502 * 12 10 9 14 14 C 1.53036 * 109.27799 * 57.65854 * 13 12 10 15 15 N 1.46850 * 109.52384 * 300.81924 * 14 13 12 16 16 C 1.46896 * 111.00472 * 185.84130 * 15 14 13 17 17 C 1.50701 * 109.47043 * 66.04154 * 16 15 14 18 18 O 1.21295 * 120.00270 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99953 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00055 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99794 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99742 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00206 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99680 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46943 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46944 * 120.00263 * 24 22 20 27 27 H 1.48492 * 109.47126 * 240.00331 * 24 22 20 28 28 C 1.46846 * 111.19870 * 61.74019 * 15 14 13 29 29 N 1.31553 * 119.04832 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47048 * 270.01856 * 1 2 3 31 31 H 1.08995 * 109.47350 * 30.02366 * 1 2 3 32 32 H 1.09003 * 109.46557 * 150.02884 * 1 2 3 33 33 H 1.08002 * 120.42540 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.86858 * 180.29687 * 5 4 3 35 35 H 0.97003 * 119.99927 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.52336 * 62.50238 * 12 10 9 37 37 H 1.09001 * 109.57675 * 302.34588 * 12 10 9 38 38 H 1.09004 * 109.50600 * 297.71890 * 13 12 10 39 39 H 1.08997 * 109.50718 * 177.59550 * 13 12 10 40 40 H 1.08995 * 109.46942 * 60.83456 * 14 13 12 41 41 H 1.08998 * 109.46530 * 180.80782 * 14 13 12 42 42 H 1.08999 * 109.47799 * 186.04465 * 16 15 14 43 43 H 1.09003 * 109.47009 * 306.04671 * 16 15 14 44 44 H 0.97004 * 120.00345 * 0.02562 * 19 17 16 45 45 H 0.96993 * 119.99603 * 180.02562 * 23 22 20 46 46 H 1.08993 * 109.46639 * 178.24333 * 28 15 14 47 47 H 1.09010 * 109.45973 * 58.27499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4683 1.1994 -0.0005 5 6 4.1861 0.0115 0.0049 6 6 3.4762 -1.1893 -0.0004 7 6 4.1927 -2.4895 -0.0005 8 8 5.4072 -2.5137 -0.0009 9 7 3.4957 -3.6431 0.0000 10 6 4.2027 -4.9261 0.0005 11 1 5.1147 -4.8395 0.5912 12 6 4.5596 -5.3137 -1.4372 13 6 5.2444 -6.6832 -1.4332 14 6 4.3139 -7.7115 -0.7861 15 7 4.0028 -7.2960 0.5875 16 6 3.2244 -8.3274 1.2862 17 6 4.0726 -9.5598 1.4678 18 8 5.2134 -9.5770 1.0562 19 7 3.5637 -10.6425 2.0885 20 6 4.3355 -11.7635 2.2542 21 1 5.3513 -11.7788 1.8877 22 6 3.8107 -12.8799 2.8937 23 7 2.5745 -12.8615 3.3392 24 14 4.8625 -14.4071 3.1201 25 1 6.2070 -14.1733 2.5345 26 1 4.9987 -14.7039 4.5687 27 1 4.2180 -15.5576 2.4375 28 6 3.3024 -6.0054 0.6061 29 7 2.1458 -1.1500 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3632 -0.8903 -0.5134 33 1 3.9825 2.1492 -0.0001 34 1 5.2661 0.0167 0.0095 35 1 2.5258 -3.6237 0.0007 36 1 5.2359 -4.5696 -1.8579 37 1 3.6518 -5.3621 -2.0385 38 1 6.1728 -6.6242 -0.8651 39 1 5.4626 -6.9840 -2.4579 40 1 3.3914 -7.7801 -1.3625 41 1 4.8043 -8.6848 -0.7688 42 1 2.9161 -7.9516 2.2617 43 1 2.3417 -8.5774 0.6975 44 1 2.6515 -10.6287 2.4180 45 1 2.2084 -13.6407 3.7859 46 1 3.0581 -5.7395 1.6345 47 1 2.3846 -6.0819 0.0231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692112103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:28 Heat of formation + Delta-G solvation = -16.348136 kcal Electronic energy + Delta-G solvation = -29566.661262 eV Core-core repulsion = 25363.565231 eV Total energy + Delta-G solvation = -4203.096032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72001 -40.09633 -38.91653 -37.57110 -35.02375 -34.34814 -33.81387 -33.71127 -32.61202 -31.19981 -29.77752 -28.99184 -27.47976 -26.04278 -24.69829 -23.77309 -22.85942 -22.59766 -20.98685 -20.02348 -19.18609 -18.59522 -17.99250 -17.82285 -16.33874 -16.09804 -16.02659 -15.90379 -15.56192 -15.11086 -14.93078 -14.88093 -14.60969 -14.21305 -13.93602 -13.88768 -13.83605 -13.45529 -13.29725 -13.17385 -13.02429 -12.88011 -12.48164 -12.08819 -11.54678 -11.48685 -11.46310 -11.36639 -11.30861 -11.08364 -10.87330 -10.77121 -10.57816 -10.40557 -10.33175 -10.22300 -10.01841 -9.79479 -9.47580 -9.29127 -8.45517 -7.98393 -7.87495 -6.41852 -3.82446 0.02830 0.40283 2.37602 2.56156 3.16396 3.27088 3.29827 3.32331 3.34463 3.51379 3.89469 3.95047 4.14835 4.26798 4.35700 4.50109 4.70652 4.77229 4.90996 4.93997 5.04084 5.07475 5.10256 5.24743 5.25913 5.30793 5.35492 5.41368 5.56739 5.60424 5.70630 5.79239 5.81208 5.89513 5.93611 6.03863 6.07870 6.16302 6.27458 6.33070 6.46407 6.54448 7.12448 7.25834 7.36487 7.47784 7.55660 7.79915 8.06728 8.61746 9.18374 9.54474 10.06137 10.75982 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.001805 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.045164 B =15511.432336 C =16170.695567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.317 3.683 3 N -0.507 5.507 4 C 0.155 3.845 5 C -0.178 4.178 6 C 0.138 3.862 7 C 0.570 3.430 8 O -0.519 6.519 9 N -0.700 5.700 10 C 0.147 3.853 11 H 0.103 0.897 12 C -0.128 4.128 13 C -0.110 4.110 14 C 0.049 3.951 15 N -0.511 5.511 16 C 0.048 3.952 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.051 3.949 29 N -0.496 5.496 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.162 0.838 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 26.218 -7.966 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.222 5.222 4 C -0.013 4.013 5 C -0.201 4.201 6 C -0.010 4.010 7 C 0.353 3.647 8 O -0.393 6.393 9 N -0.350 5.350 10 C 0.043 3.957 11 H 0.121 0.879 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.078 4.078 15 N -0.235 5.235 16 C -0.083 4.083 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.078 4.078 29 N -0.214 5.214 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.623 26.010 -7.890 27.571 hybrid contribution -0.499 -0.790 0.033 0.935 sum -5.121 25.221 -7.856 26.908 Atomic orbital electron populations 1.20623 0.85048 1.04539 1.04287 1.23297 0.98390 0.82915 0.90433 1.68238 1.10512 1.30406 1.13045 1.23396 0.89386 0.98752 0.89746 1.22995 1.04050 0.92949 1.00075 1.21690 0.89865 0.94845 0.94602 1.17747 0.86608 0.82876 0.77437 1.90830 1.12554 1.86745 1.49192 1.45872 1.11134 1.05186 1.72837 1.21085 0.96538 0.80605 0.97515 0.87925 1.21981 1.00800 0.98203 0.95732 1.21503 0.99667 0.93098 1.00575 1.22329 0.97732 1.01107 0.86613 1.61378 1.44349 1.00822 1.16978 1.21837 0.94650 0.92486 0.99362 1.19704 0.88537 0.84410 0.84420 1.90494 1.18906 1.82912 1.53631 1.41872 1.15209 1.12017 1.51037 1.19750 0.97985 0.90072 1.34869 0.87825 1.25264 0.96320 0.99506 0.96928 1.69619 1.14077 1.31275 1.39389 0.85803 0.79880 0.80748 0.77938 1.19207 1.20774 1.20806 1.22242 0.94538 0.90049 1.00988 1.68184 1.08696 1.31265 1.13251 0.89255 0.89339 0.89276 0.80464 0.82029 0.75456 0.91493 0.92180 0.90496 0.91328 0.95901 0.87537 0.89271 0.93352 0.77511 0.91951 0.90191 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.31 36.01 0.37 -0.07 16 2 C 0.32 2.67 7.64 -157.29 -1.20 1.46 16 3 N -0.51 -4.26 10.32 -10.73 -0.11 -4.37 16 4 C 0.15 1.04 11.31 -17.19 -0.19 0.84 16 5 C -0.18 -1.43 9.72 -38.90 -0.38 -1.81 16 6 C 0.14 1.38 6.79 -82.64 -0.56 0.82 16 7 C 0.57 6.69 7.80 -12.05 -0.09 6.59 16 8 O -0.52 -7.51 16.09 5.38 0.09 -7.43 16 9 N -0.70 -7.37 5.08 -54.48 -0.28 -7.64 16 10 C 0.15 1.79 2.61 -67.85 -0.18 1.61 16 11 H 0.10 1.50 7.58 -51.93 -0.39 1.10 16 12 C -0.13 -1.54 5.58 -26.61 -0.15 -1.69 16 13 C -0.11 -1.49 6.09 -26.65 -0.16 -1.66 16 14 C 0.05 0.79 5.11 -3.83 -0.02 0.77 16 15 N -0.51 -8.30 4.39 -236.11 -1.04 -9.34 16 16 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.29 7.46 -10.98 -0.08 10.20 16 18 O -0.58 -15.21 13.92 5.54 0.08 -15.13 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 C 0.05 0.63 4.93 -3.83 -0.02 0.61 16 29 N -0.50 -4.67 9.60 -7.32 -0.07 -4.74 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.16 1.12 7.74 -52.49 -0.41 0.72 16 35 H 0.41 3.64 7.99 -40.82 -0.33 3.31 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.11 2.08 5.80 -51.93 -0.30 1.77 16 42 H 0.09 1.40 7.98 -51.93 -0.41 0.99 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 47 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -33.30 392.51 -9.45 -42.75 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.74 Total: 11.27 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.93 Total: 10.62 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.83 Total: -63.95 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.16 Total: -22.56 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.30 -9.45 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692112103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds