Wall clock time and date at job start Wed Apr 1 2020 04:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31919 * 119.03636 * 2 1 4 4 C 1.32180 * 121.03291 * 180.02562 * 3 2 1 5 5 C 1.38800 * 119.14617 * 359.71804 * 4 3 2 6 6 C 1.39497 * 118.26301 * 0.52015 * 5 4 3 7 7 C 1.48456 * 120.55126 * 179.75631 * 6 5 4 8 8 O 1.21479 * 119.99801 * 359.72171 * 7 6 5 9 9 N 1.34775 * 120.00312 * 179.72277 * 7 6 5 10 10 C 1.46497 * 120.00063 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.53964 * 35.09939 * 10 9 7 12 12 C 1.53120 * 109.50232 * 274.99699 * 10 9 7 13 13 C 1.53114 * 109.16161 * 182.40502 * 12 10 9 14 14 C 1.53036 * 109.27799 * 57.65854 * 13 12 10 15 15 N 1.46850 * 109.52384 * 300.81924 * 14 13 12 16 16 C 1.46896 * 111.00472 * 185.84130 * 15 14 13 17 17 C 1.50701 * 109.47043 * 66.04154 * 16 15 14 18 18 O 1.21295 * 120.00270 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99953 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00055 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99794 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99742 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00206 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99680 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46943 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46944 * 120.00263 * 24 22 20 27 27 H 1.48492 * 109.47126 * 240.00331 * 24 22 20 28 28 C 1.46846 * 111.19870 * 61.74019 * 15 14 13 29 29 N 1.31553 * 119.04832 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47048 * 270.01856 * 1 2 3 31 31 H 1.08995 * 109.47350 * 30.02366 * 1 2 3 32 32 H 1.09003 * 109.46557 * 150.02884 * 1 2 3 33 33 H 1.08002 * 120.42540 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.86858 * 180.29687 * 5 4 3 35 35 H 0.97003 * 119.99927 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.52336 * 62.50238 * 12 10 9 37 37 H 1.09001 * 109.57675 * 302.34588 * 12 10 9 38 38 H 1.09004 * 109.50600 * 297.71890 * 13 12 10 39 39 H 1.08997 * 109.50718 * 177.59550 * 13 12 10 40 40 H 1.08995 * 109.46942 * 60.83456 * 14 13 12 41 41 H 1.08998 * 109.46530 * 180.80782 * 14 13 12 42 42 H 1.08999 * 109.47799 * 186.04465 * 16 15 14 43 43 H 1.09003 * 109.47009 * 306.04671 * 16 15 14 44 44 H 0.97004 * 120.00345 * 0.02562 * 19 17 16 45 45 H 0.96993 * 119.99603 * 180.02562 * 23 22 20 46 46 H 1.08993 * 109.46639 * 178.24333 * 28 15 14 47 47 H 1.09010 * 109.45973 * 58.27499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4683 1.1994 -0.0005 5 6 4.1861 0.0115 0.0049 6 6 3.4762 -1.1893 -0.0004 7 6 4.1927 -2.4895 -0.0005 8 8 5.4072 -2.5137 -0.0009 9 7 3.4957 -3.6431 0.0000 10 6 4.2027 -4.9261 0.0005 11 1 5.1147 -4.8395 0.5912 12 6 4.5596 -5.3137 -1.4372 13 6 5.2444 -6.6832 -1.4332 14 6 4.3139 -7.7115 -0.7861 15 7 4.0028 -7.2960 0.5875 16 6 3.2244 -8.3274 1.2862 17 6 4.0726 -9.5598 1.4678 18 8 5.2134 -9.5770 1.0562 19 7 3.5637 -10.6425 2.0885 20 6 4.3355 -11.7635 2.2542 21 1 5.3513 -11.7788 1.8877 22 6 3.8107 -12.8799 2.8937 23 7 2.5745 -12.8615 3.3392 24 14 4.8625 -14.4071 3.1201 25 1 6.2070 -14.1733 2.5345 26 1 4.9987 -14.7039 4.5687 27 1 4.2180 -15.5576 2.4375 28 6 3.3024 -6.0054 0.6061 29 7 2.1458 -1.1500 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3632 -0.8903 -0.5134 33 1 3.9825 2.1492 -0.0001 34 1 5.2661 0.0167 0.0095 35 1 2.5258 -3.6237 0.0007 36 1 5.2359 -4.5696 -1.8579 37 1 3.6518 -5.3621 -2.0385 38 1 6.1728 -6.6242 -0.8651 39 1 5.4626 -6.9840 -2.4579 40 1 3.3914 -7.7801 -1.3625 41 1 4.8043 -8.6848 -0.7688 42 1 2.9161 -7.9516 2.2617 43 1 2.3417 -8.5774 0.6975 44 1 2.6515 -10.6287 2.4180 45 1 2.2084 -13.6407 3.7859 46 1 3.0581 -5.7395 1.6345 47 1 2.3846 -6.0819 0.0231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692112103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:27 Heat of formation + Delta-G solvation = -41.755867 kcal Electronic energy + Delta-G solvation = -29567.763024 eV Core-core repulsion = 25363.565231 eV Total energy + Delta-G solvation = -4204.197794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36957 -41.10521 -40.32335 -39.05407 -36.23167 -35.71561 -34.99305 -34.27326 -33.78819 -33.17989 -30.82400 -29.47124 -28.97304 -26.78996 -26.51021 -24.50562 -24.08417 -23.52237 -21.89976 -21.14660 -20.90117 -19.85776 -19.40199 -18.61961 -17.72051 -17.35352 -16.80410 -16.70997 -16.52644 -16.39257 -16.27577 -15.91546 -15.77791 -15.72588 -15.26223 -15.06461 -14.82956 -14.53294 -14.43090 -14.35039 -13.87695 -13.51674 -13.48069 -13.43600 -13.22147 -13.01230 -12.70055 -12.42673 -12.39182 -12.12628 -12.07107 -12.02069 -11.94077 -11.85142 -11.66267 -11.56034 -11.37683 -10.61461 -10.46712 -10.27001 -10.20550 -9.97770 -9.21669 -8.45428 -5.93406 -0.65909 -0.15637 1.36843 1.42117 1.55649 1.56282 1.68832 2.07583 2.29558 2.61901 2.67483 2.85414 3.01798 3.21698 3.38343 3.46582 3.67387 3.72214 3.80891 3.97928 4.01837 4.15041 4.27204 4.34431 4.38654 4.42647 4.47752 4.53440 4.58928 4.59667 4.70132 4.74393 4.82852 4.87409 4.97206 5.01080 5.01155 5.19393 5.25127 5.33797 5.38095 5.43044 5.70337 5.88641 6.08434 6.19694 6.30532 6.62787 6.85221 6.95900 7.15224 7.58928 8.15103 8.72202 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.001805 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.045164 B =15511.432336 C =16170.695567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.306 3.694 3 N -0.519 5.519 4 C 0.163 3.837 5 C -0.180 4.180 6 C 0.119 3.881 7 C 0.570 3.430 8 O -0.554 6.554 9 N -0.688 5.688 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.118 4.118 13 C -0.104 4.104 14 C 0.053 3.947 15 N -0.534 5.534 16 C 0.061 3.939 17 C 0.441 3.559 18 O -0.613 6.613 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.056 3.944 29 N -0.505 5.505 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.216 0.784 34 H 0.169 0.831 35 H 0.420 0.580 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.090 0.910 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 27.821 -8.255 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.234 5.234 4 C -0.004 4.004 5 C -0.203 4.203 6 C -0.028 4.028 7 C 0.354 3.646 8 O -0.431 6.431 9 N -0.339 5.339 10 C 0.049 3.951 11 H 0.093 0.907 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.074 4.074 15 N -0.259 5.259 16 C -0.070 4.070 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.072 4.072 29 N -0.223 5.223 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.232 0.768 34 H 0.186 0.814 35 H 0.258 0.742 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.454 27.625 -8.176 29.524 hybrid contribution 0.067 -1.184 0.104 1.190 sum -6.387 26.441 -8.072 28.374 Atomic orbital electron populations 1.20736 0.83036 1.05381 1.05137 1.23910 0.99700 0.82672 0.89851 1.68344 1.11263 1.30401 1.13371 1.24013 0.88945 0.99691 0.87793 1.23178 1.04530 0.92855 0.99742 1.21527 0.90485 0.94431 0.96406 1.18033 0.86293 0.83664 0.76573 1.90810 1.14056 1.87316 1.50868 1.45703 1.11515 1.04347 1.72295 1.20854 0.95695 0.81366 0.97233 0.90740 1.21882 1.01283 0.96730 0.95802 1.21435 0.98324 0.93682 1.00812 1.22194 0.98507 0.99637 0.87106 1.61280 1.45547 1.01901 1.17165 1.21702 0.93957 0.90121 1.01260 1.20774 0.88594 0.85428 0.82341 1.90478 1.21007 1.83830 1.54587 1.41930 1.15247 1.12171 1.51916 1.19673 0.97645 0.91969 1.36609 0.90401 1.26008 0.97513 1.01723 0.96101 1.69674 1.14909 1.32240 1.39360 0.84892 0.77957 0.77405 0.78212 1.19914 1.19732 1.19599 1.22247 0.94933 0.87803 1.02205 1.68171 1.08303 1.31910 1.13903 0.88266 0.88353 0.88561 0.76773 0.81357 0.74199 0.91916 0.90243 0.92855 0.89770 0.94024 0.91749 0.87038 0.90922 0.77001 0.91374 0.89177 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.31 71.24 0.73 0.04 16 2 C 0.31 4.59 7.64 138.79 1.06 5.65 16 3 N -0.52 -7.63 10.32 -187.87 -1.94 -9.57 16 4 C 0.16 1.82 11.31 84.78 0.96 2.78 16 5 C -0.18 -2.67 9.72 22.71 0.22 -2.45 16 6 C 0.12 2.26 6.79 41.98 0.29 2.55 16 7 C 0.57 13.10 7.80 86.97 0.68 13.78 16 8 O -0.55 -16.23 16.09 -3.65 -0.06 -16.29 16 9 N -0.69 -13.62 5.08 -444.58 -2.26 -15.88 16 10 C 0.15 3.60 2.61 45.05 0.12 3.72 16 11 H 0.07 2.21 7.58 -2.39 -0.02 2.20 16 12 C -0.12 -2.70 5.58 30.67 0.17 -2.53 16 13 C -0.10 -2.82 6.09 30.64 0.19 -2.63 16 14 C 0.05 1.67 5.11 86.32 0.44 2.11 16 15 N -0.53 -16.91 4.39 -900.93 -3.96 -20.86 16 16 C 0.06 2.03 5.45 85.56 0.47 2.50 16 17 C 0.44 20.81 7.46 87.66 0.65 21.46 16 18 O -0.61 -33.72 13.92 -3.08 -0.04 -33.76 16 19 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 20 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 23 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 24 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.06 1.28 4.93 86.33 0.43 1.71 16 29 N -0.50 -8.77 9.60 -177.08 -1.70 -10.47 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.17 2.19 7.74 -2.91 -0.02 2.17 16 35 H 0.42 6.60 7.99 -92.71 -0.74 5.86 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 2.60 5.80 -2.39 -0.01 2.59 16 42 H 0.11 3.27 7.98 -2.39 -0.02 3.25 16 43 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 44 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 47 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -74.39 392.51 -2.04 -76.43 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.45 Total: 34.87 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.68 Total: 30.54 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -11.19 Total: -136.98 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.10 Total: -50.05 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.39 -2.04 -76.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692112103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds